@Override
public String getValueAsString(Locale locale) {
if (obs.getValueCoded() != null) {
return obs.getValueCoded().getNames(false).iterator().next().getName();
} else if (obs.getValueDate() != null) {
return new SimpleDateFormat("dd MMM yyyy hh:mm a", locale).format(obs.getValueDate());
} else {
return obs.getValueAsString(locale);
}
}
public static List<Chemotherapy> generateChemotherapies(Patient patient) {
List<Encounter> encounters =
getEncountersByTreatment(patient, PatientPortalToolkitConstants.CHEMOTHERAPY_ENCOUNTER);
List<Chemotherapy> chemotherapiesList = new ArrayList<Chemotherapy>();
for (Encounter e : encounters) {
Chemotherapy chemotherapy = new Chemotherapy();
List<String> chemomedications = new ArrayList<String>();
Set<Obs> obsList = e.getObs();
chemotherapy.setEncounterUuid(e.getUuid());
for (Obs o : obsList) {
if (o.getConcept().getUuid().equals("8481b9da-74e3-45a9-9124-d69ab572d636"))
chemomedications.add(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("85c3a99e-0598-4c63-912b-796dee9c75b2"))
chemotherapy.setChemoStartDate(o.getValueDate());
if (o.getConcept().getUuid().equals("7dd8b8aa-b0f1-4eb1-862d-b6d737bdd315"))
chemotherapy.setChemoEndDate(o.getValueDate());
if (o.getConcept().getUuid().equals("361b7f9b-a985-4b18-9055-03af3b41b8b3")) {
if (o.getValueCoded().getUuid().equals("1065AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"))
chemotherapy.setCentralLine(true);
else chemotherapy.setCentralLine(false);
}
// doctors name
if (o.getConcept().getUuid().equals("c2cb2220-c07d-47c6-a4df-e5918aac3fc2"))
chemotherapy.setPcpName(o.getValueText());
// doctors email
if (o.getConcept().getUuid().equals("898a0028-8c65-4db9-a802-1577fce59864"))
chemotherapy.setPcpEmail(o.getValueText());
// doctors phone
if (o.getConcept().getUuid().equals("9285b227-4054-4830-ac32-5ea78462e8c4"))
chemotherapy.setPcpPhone(o.getValueText());
if (o.getConcept().getUuid().equals("47d58999-d3b5-4869-a52e-841e2e6bdbb3"))
chemotherapy.setInstitutionName(o.getValueText());
if (o.getConcept().getUuid().equals("bfa752d6-2037-465e-b0a2-c4c2d485ec32"))
chemotherapy.setInstitutionCity(o.getValueText());
if (o.getConcept().getUuid().equals("34489100-487e-443a-bf27-1b6869fb9332"))
chemotherapy.setInstitutionState(o.getValueText());
}
chemotherapy.setChemoMedications(chemomedications);
chemotherapiesList.add(chemotherapy);
}
return chemotherapiesList;
}
public static List<Radiation> generateRadiations(Patient patient) {
List<Encounter> encounters =
getEncountersByTreatment(patient, PatientPortalToolkitConstants.RADIATION_ENCOUNTER);
List<Radiation> radiationsList = new ArrayList<Radiation>();
for (Encounter e : encounters) {
Radiation radiation = new Radiation();
List<String> radiationTypes = new ArrayList<String>();
Set<Obs> obsList = e.getObs();
radiation.setEncounterUuid(e.getUuid());
for (Obs o : obsList) {
if (o.getConcept().getUuid().equals("42fb7bb5-f840-4518-814c-893813211cba"))
radiationTypes.add(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("85c3a99e-0598-4c63-912b-796dee9c75b2"))
radiation.setStartDate(o.getValueDate());
if (o.getConcept().getUuid().equals("7dd8b8aa-b0f1-4eb1-862d-b6d737bdd315"))
radiation.setEndDate(o.getValueDate());
// doctors name
if (o.getConcept().getUuid().equals("c2cb2220-c07d-47c6-a4df-e5918aac3fc2"))
radiation.setPcpName(o.getValueText());
// doctors email
if (o.getConcept().getUuid().equals("898a0028-8c65-4db9-a802-1577fce59864"))
radiation.setPcpEmail(o.getValueText());
// doctors phone
if (o.getConcept().getUuid().equals("9285b227-4054-4830-ac32-5ea78462e8c4"))
radiation.setPcpPhone(o.getValueText());
if (o.getConcept().getUuid().equals("47d58999-d3b5-4869-a52e-841e2e6bdbb3"))
radiation.setInstitutionName(o.getValueText());
if (o.getConcept().getUuid().equals("bfa752d6-2037-465e-b0a2-c4c2d485ec32"))
radiation.setInstitutionCity(o.getValueText());
if (o.getConcept().getUuid().equals("34489100-487e-443a-bf27-1b6869fb9332"))
radiation.setInstitutionState(o.getValueText());
}
radiation.setRadiationTypes(radiationTypes);
radiationsList.add(radiation);
}
return radiationsList;
}
public static List<Surgery> generateSurgeries(Patient patient) {
List<Encounter> encounters =
getEncountersByTreatment(patient, PatientPortalToolkitConstants.SURGERY_ENCOUNTER);
List<Surgery> surgeriesList = new ArrayList<Surgery>();
for (Encounter e : encounters) {
Surgery surgery = new Surgery();
List<String> surgeryTypes = new ArrayList<String>();
Set<Obs> obsList = e.getObs();
surgery.setEncounterUuid(e.getUuid());
for (Obs o : obsList) {
if (o.getConcept().getUuid().equals("d409122c-8a0b-4282-a17f-07abad81f278"))
surgeryTypes.add(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("99ef1d68-05ed-4f37-b98b-c982e3574138")) {
if (o.getValueCoded().getUuid().equals("1065AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"))
surgery.setHasMajorComplications(true);
else surgery.setHasMajorComplications(false);
}
if (o.getConcept().getUuid().equals("c2d9fca3-1e0b-4007-8c3c-b3ebb4e67963"))
surgery.setMajorComplications(o.getValueText());
if (o.getConcept().getUuid().equals("87a69397-65ef-4576-a709-ae0a526afd85"))
surgery.setSurgeryDate(o.getValueDate());
// doctors name
if (o.getConcept().getUuid().equals("c2cb2220-c07d-47c6-a4df-e5918aac3fc2"))
surgery.setPcpName(o.getValueText());
// doctors email
if (o.getConcept().getUuid().equals("898a0028-8c65-4db9-a802-1577fce59864"))
surgery.setPcpEmail(o.getValueText());
// doctors phone
if (o.getConcept().getUuid().equals("9285b227-4054-4830-ac32-5ea78462e8c4"))
surgery.setPcpPhone(o.getValueText());
if (o.getConcept().getUuid().equals("47d58999-d3b5-4869-a52e-841e2e6bdbb3"))
surgery.setInstitutionName(o.getValueText());
if (o.getConcept().getUuid().equals("bfa752d6-2037-465e-b0a2-c4c2d485ec32"))
surgery.setInstitutionCity(o.getValueText());
if (o.getConcept().getUuid().equals("34489100-487e-443a-bf27-1b6869fb9332"))
surgery.setInstitutionState(o.getValueText());
}
surgery.setSurgeryTypes(surgeryTypes);
surgeriesList.add(surgery);
}
return surgeriesList;
}
public static List<GeneralHistory> generateGeneralHistory(Patient patient) {
List<Encounter> encounters =
getEncountersByTreatment(patient, PatientPortalToolkitConstants.TREATMENTSUMMARY_ENCOUNTER);
List<GeneralHistory> generalHistoryList = new ArrayList<GeneralHistory>();
for (Encounter e : encounters) {
GeneralHistory generalHistory = new GeneralHistory();
generalHistory.setEncounterUuid(e.getUuid());
Set<Obs> obsList = e.getObs();
for (Obs o : obsList) {
if (o.getConcept().getUuid().equals("efa3f9eb-ade4-4ddb-92c9-0fc1119d112d"))
generalHistory.setCancerStage(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("cdf6d767-2aa3-40b6-ae78-0386eebe2411"))
generalHistory.setCancerType(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("395878ae-5108-4aad-8ad8-9b88e812d278")) {
if (o.getValueCoded().getUuid().equals("1065AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"))
generalHistory.setHasGeneticOrPredisposingAbnormality(true);
else generalHistory.setHasGeneticOrPredisposingAbnormality(false);
}
if (o.getConcept().getUuid().equals("8719adbe-0975-477f-a95f-2fae4d6cbdae"))
generalHistory.setGeneticOrPredisposingAbnormality(o.getValueCoded().getName().getName());
if (o.getConcept().getUuid().equals("654e32f0-8b57-4d1f-845e-500922e800f6"))
generalHistory.setDiagnosisDate(o.getValueDate());
// doctors name
if (o.getConcept().getUuid().equals("c2cb2220-c07d-47c6-a4df-e5918aac3fc2"))
generalHistory.setPcpName(o.getValueText());
// doctors email
if (o.getConcept().getUuid().equals("898a0028-8c65-4db9-a802-1577fce59864"))
generalHistory.setPcpEmail(o.getValueText());
// doctors phone
if (o.getConcept().getUuid().equals("9285b227-4054-4830-ac32-5ea78462e8c4"))
generalHistory.setPcpPhone(o.getValueText());
}
generalHistoryList.add(generalHistory);
}
return generalHistoryList;
}
/**
* @see EligibleForArtTriggerCalculation#evaluate(java.util.Collection, java.util.Map,
* org.openmrs.calculation.patient.PatientCalculationContext)
* @verifies calculate the obs which triggered a patient to become eligible for ART
* @verifies return null for patients who have never been eligible for ART
*/
@Test
public void evaluate_shouldCalculateEligibilityTrigger() throws Exception {
PatientService ps = Context.getPatientService();
// Confirm patient #6 HIV+ when they're 1 year old and give them very low CD4 soon after
TestUtils.saveObs(
ps.getPatient(6),
Dictionary.getConcept(Dictionary.DATE_OF_HIV_DIAGNOSIS),
TestUtils.date(2008, 05, 27),
TestUtils.date(2010, 1, 1));
TestUtils.saveObs(
ps.getPatient(6),
Dictionary.getConcept(Dictionary.CD4_COUNT),
300.0,
TestUtils.date(2009, 1, 1));
// Give patient #7 low CD4 when they're 3 years old and very low CD4 after
TestUtils.saveObs(
ps.getPatient(7),
Dictionary.getConcept(Dictionary.CD4_COUNT),
900.0,
TestUtils.date(1979, 8, 25));
TestUtils.saveObs(
ps.getPatient(7),
Dictionary.getConcept(Dictionary.CD4_COUNT),
300.0,
TestUtils.date(2009, 1, 1));
// Give patient #8 WHO stage of 3
TestUtils.saveObs(
ps.getPatient(8),
Dictionary.getConcept(Dictionary.CURRENT_WHO_STAGE),
Dictionary.getConcept(Dictionary.WHO_STAGE_3_PEDS),
TestUtils.date(2009, 1, 1));
Context.flushSession();
List<Integer> cohort = Arrays.asList(6, 7, 8, 999);
CalculationResultMap resultMap =
new EligibleForArtTriggerCalculation()
.evaluate(
cohort,
null,
Context.getService(PatientCalculationService.class).createCalculationContext());
Obs patient6Trigger = (Obs) resultMap.get(6).getValue(); // Eligible through HIV confirmation
Assert.assertEquals(Dictionary.DATE_OF_HIV_DIAGNOSIS, patient6Trigger.getConcept().getUuid());
Assert.assertEquals(TestUtils.date(2008, 05, 27), patient6Trigger.getValueDate());
Obs patient7Trigger = (Obs) resultMap.get(7).getValue(); // Eligible through CD4 count
Assert.assertEquals(Dictionary.CD4_COUNT, patient7Trigger.getConcept().getUuid());
Assert.assertEquals(TestUtils.date(1979, 8, 25), patient7Trigger.getObsDatetime());
Obs patient8Trigger = (Obs) resultMap.get(8).getValue(); // Eligible through WHO stage
Assert.assertEquals(Dictionary.CURRENT_WHO_STAGE, patient8Trigger.getConcept().getUuid());
Assert.assertEquals(TestUtils.date(2009, 1, 1), patient8Trigger.getObsDatetime());
Assert.assertNull(resultMap.get(999)); // Was never eligible for ART
}