private void handleEncounterProvider(Provider provider) {
EncounterProvider encounterProvider = mock(EncounterProvider.class);
when(encounterProvider.getProvider()).thenReturn(provider);
Set<EncounterProvider> providerSet = new HashSet<EncounterProvider>();
providerSet.add(encounterProvider);
when(encounter.getEncounterProviders()).thenReturn(providerSet);
}
@PropertyGetter("encounterProviders")
public static Set<EncounterProvider> getActiveEncounterProviders(Encounter instance) {
Set<EncounterProvider> encounterProviders = instance.getEncounterProviders();
Set<EncounterProvider> providers = new LinkedHashSet<EncounterProvider>();
for (EncounterProvider encounterProvider : encounterProviders) {
if (!encounterProvider.isVoided()) {
providers.add(encounterProvider);
}
}
return providers;
}
@Override
public Encounter save(Encounter delegate) {
// This is a hack to save encounterProviders correctly. Without this they are created without
// encounter_id in
// the database.
for (EncounterProvider ep : delegate.getEncounterProviders()) {
ep.setEncounter(delegate);
}
Context.getEncounterService().saveEncounter(delegate);
return delegate;
}
@SuppressWarnings("unused")
public static JSONObject createJsonObservation(Obs obs) {
JSONObject jsonObs = new JSONObject();
jsonObs.put("observation_id", obs.getObsId());
jsonObs.put("concept_name", obs.getConcept().getDisplayString());
Date obsDate = obs.getObsDatetime() == null ? new Date() : obs.getObsDatetime();
SimpleDateFormat formatDateJava = new SimpleDateFormat("dd/MM/yyyy HH:mm:ss");
String dateStr = obsDate.getTime() + "";
jsonObs.put("date", dateStr);
if (obs.getConcept().getDatatype().isNumeric()) { // ADD MORE DATATYPES
ConceptNumeric conceptNumeric =
Context.getConceptService().getConceptNumeric(obs.getConcept().getId());
jsonObs.put("units_of_measurement", conceptNumeric.getUnits());
jsonObs.put("absolute_high", conceptNumeric.getHiAbsolute());
jsonObs.put("absolute_low", conceptNumeric.getLowAbsolute());
jsonObs.put("critical_high", conceptNumeric.getHiCritical());
jsonObs.put("critical_low", conceptNumeric.getLowCritical());
jsonObs.put("normal_high", conceptNumeric.getHiNormal());
jsonObs.put("normal_low", conceptNumeric.getLowNormal());
}
jsonObs.put("value_type", obs.getConcept().getDatatype().getName());
jsonObs.put("value", obs.getValueAsString(Context.getLocale()));
jsonObs.put("location", obs.getLocation().getDisplayString());
jsonObs.put("creator", obs.getCreator().getDisplayString());
Set<EncounterProvider> encounterProviders = obs.getEncounter().getEncounterProviders();
if (encounterProviders != null && encounterProviders.iterator().hasNext()) {
EncounterProvider provider = encounterProviders.iterator().next();
if (provider.getProvider() != null) {
jsonObs.put("provider", provider.getProvider().getName());
}
}
SearchAPI searchAPI = SearchAPI.getInstance();
if (!searchAPI.getSearchPhrase().getPhrase().equals("")
&& !searchAPI.getSearchPhrase().getPhrase().equals("*")) {
for (ChartListItem item : searchAPI.getResults()) {
if (item != null && item instanceof ObsItem && ((ObsItem) item).getObsId() != null) {
if (((ObsItem) item).getObsId() == obs.getObsId()) {
jsonObs.put("chosen", "true");
}
}
}
}
return jsonObs;
}
public static Set<String> generateProvidersFromResults() {
Set<String> res = new HashSet<String>();
SearchAPI searchAPI = SearchAPI.getInstance();
for (ChartListItem item : searchAPI.getResults()) {
if (item != null && item instanceof ObsItem && ((ObsItem) item).getObsId() != null) {
int itemObsId = ((ObsItem) item).getObsId();
Obs obs = Context.getObsService().getObs(itemObsId);
if (obs != null) {
Set<EncounterProvider> encounterProviders = obs.getEncounter().getEncounterProviders();
if (encounterProviders != null && encounterProviders.iterator().hasNext()) {
EncounterProvider provider = encounterProviders.iterator().next();
if (provider.getProvider() != null) {
res.add(provider.getProvider().getName());
}
}
}
}
}
return res;
}
/**
* Adds the column headers and column data to the DataSet
*
* @param dataSet
* @param encounters
* @param patientIdentifierTypes
* @param optionalColumns
* @param columnDisplayFormat
* @param maxColumnHeaderWidth
* @param allColumns
* @param fieldMap
* @return
*/
public DataSet addData(
SimpleDataSet dataSet,
List<Encounter> encounters,
List<PatientIdentifierType> patientIdentifierTypes,
List<EncounterAndObsDataSetDefinition.ObsOptionalColumn> optionalColumns,
List<EncounterAndObsDataSetDefinition.ColumnDisplayFormat> columnDisplayFormat,
Integer maxColumnHeaderWidth,
Set<ObsColumnDescriptor> allColumns,
Map<Encounter, Map<ObsColumnDescriptor, Obs>> fieldMap) {
for (Encounter encounter : encounters) {
DataSetRow row = new DataSetRow();
List<String> providerNames = new ArrayList<String>();
for (EncounterProvider ep : encounter.getEncounterProviders()) {
providerNames.add(ep.getProvider().getName());
}
// Add the standard columns for encounters
DataSetColumn c1 =
new DataSetColumn(
ObjectUtil.trimStringIfNeeded("ENCOUNTER_ID", maxColumnHeaderWidth),
ObjectUtil.trimStringIfNeeded("ENCOUNTER_ID", maxColumnHeaderWidth),
Integer.class);
row.addColumnValue(c1, encounter.getEncounterId());
DataSetColumn c2 =
new DataSetColumn(
ObjectUtil.trimStringIfNeeded("ENCOUNTER_DATETIME", maxColumnHeaderWidth),
ObjectUtil.trimStringIfNeeded("ENCOUNTER_DATETIME", maxColumnHeaderWidth),
String.class);
row.addColumnValue(c2, encounter.getEncounterDatetime().toString());
DataSetColumn c3 =
new DataSetColumn(
ObjectUtil.trimStringIfNeeded("LOCATION", maxColumnHeaderWidth),
ObjectUtil.trimStringIfNeeded("LOCATION", maxColumnHeaderWidth),
String.class);
row.addColumnValue(
c3, (encounter.getLocation() != null) ? encounter.getLocation().getName() : EMPTY);
DataSetColumn c4 =
new DataSetColumn(
ObjectUtil.trimStringIfNeeded("PROVIDER", maxColumnHeaderWidth),
ObjectUtil.trimStringIfNeeded("PROVIDER", maxColumnHeaderWidth),
String.class);
row.addColumnValue(c4, OpenmrsUtil.join(providerNames, ", "));
DataSetColumn c5 =
new DataSetColumn(
ObjectUtil.trimStringIfNeeded("INTERNAL_PATIENT_ID", maxColumnHeaderWidth),
ObjectUtil.trimStringIfNeeded("INTERNAL_PATIENT_ID", maxColumnHeaderWidth),
Integer.class);
row.addColumnValue(
c5, encounter.getPatient() != null ? encounter.getPatient().getPatientId() : EMPTY);
if (patientIdentifierTypes != null) {
for (PatientIdentifierType pit : patientIdentifierTypes) {
List<PatientIdentifier> patientIdentifiers =
encounter.getPatient().getPatientIdentifiers(pit);
StringBuffer sbPatientIdentifiers = new StringBuffer();
int count = 0;
for (PatientIdentifier patientIdentifier : patientIdentifiers) {
if (count > 0) {
sbPatientIdentifiers.append(", ");
}
sbPatientIdentifiers.append(patientIdentifier.toString());
count++;
}
DataSetColumn c6 =
new DataSetColumn(
pit.getName(),
ObjectUtil.trimStringIfNeeded(pit.getName(), maxColumnHeaderWidth),
String.class);
row.addColumnValue(c6, sbPatientIdentifiers.toString());
}
}
Map<ObsColumnDescriptor, Obs> obsInEncounter = fieldMap.get(encounter);
// Look up all obs for a given encounter based on column headers for all encounters
for (ObsColumnDescriptor columnKey : allColumns) {
Obs obs = obsInEncounter.get(columnKey);
String columnName = columnKey.format(columnDisplayFormat, maxColumnHeaderWidth);
DataSetColumn obsDsc = new DataSetColumn(columnName, columnName, String.class);
StringBuffer columnValue = new StringBuffer();
if (obs != null && obs.getValueCoded() != null) {
if (columnDisplayFormat.contains(
EncounterAndObsDataSetDefinition.ColumnDisplayFormat.ID)) {
columnValue.append(obs.getValueCoded());
}
if (columnDisplayFormat.contains(EncounterAndObsDataSetDefinition.ColumnDisplayFormat.ID)
&& columnDisplayFormat.contains(
EncounterAndObsDataSetDefinition.ColumnDisplayFormat.BEST_SHORT_NAME)) {
columnValue.append("_");
}
if (columnDisplayFormat.contains(
EncounterAndObsDataSetDefinition.ColumnDisplayFormat.BEST_SHORT_NAME)) {
String conceptName = obs.getValueAsString(Context.getLocale());
columnValue.append(
maxColumnHeaderWidth != null
&& conceptName.length() > maxColumnHeaderWidth - columnValue.length()
? conceptName.substring(0, maxColumnHeaderWidth - columnValue.length() - 1)
: conceptName);
}
row.addColumnValue(obsDsc, (obs != null) ? columnValue.toString() : EMPTY);
} else {
row.addColumnValue(
obsDsc, (obs != null) ? obs.getValueAsString(Context.getLocale()) : EMPTY);
}
String dateColumnName =
columnKey.format(
columnDisplayFormat,
maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 5 : null);
DataSetColumn obsDscDate =
new DataSetColumn(dateColumnName + "_DATE", dateColumnName + "_DATE", String.class);
row.addColumnValue(obsDscDate, (obs != null) ? obs.getObsDatetime().toString() : EMPTY);
String parentColumnName =
columnKey.format(
columnDisplayFormat,
maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 7 : null);
DataSetColumn obsDscParent =
new DataSetColumn(
parentColumnName + "_PARENT", parentColumnName + "_PARENT", String.class);
row.addColumnValue(
obsDscParent,
(obs != null && obs.getObsGroup() != null) ? obs.getObsGroup().getId() : EMPTY);
if (optionalColumns != null) {
if (optionalColumns.contains(
EncounterAndObsDataSetDefinition.ObsOptionalColumn.VALUE_MODIFIER)) {
String valModColumnName =
columnKey.format(
columnDisplayFormat,
maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 10 : null);
DataSetColumn obsDscValueModifier =
new DataSetColumn(
valModColumnName + "_VALUE_MOD", valModColumnName + "_VALUE_MOD", String.class);
row.addColumnValue(obsDscValueModifier, (obs != null) ? obs.getValueModifier() : EMPTY);
}
if (optionalColumns.contains(
EncounterAndObsDataSetDefinition.ObsOptionalColumn.ACCESSION_NUMBER)) {
String accessionNumColumnName =
columnKey.format(
columnDisplayFormat,
maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 14 : null);
DataSetColumn obsDscAccessionNumber =
new DataSetColumn(
accessionNumColumnName + "_ACCESSION_NUM",
accessionNumColumnName + "_ACCESSION_NUM",
String.class);
row.addColumnValue(
obsDscAccessionNumber, (obs != null) ? obs.getAccessionNumber() : EMPTY);
}
if (optionalColumns.contains(
EncounterAndObsDataSetDefinition.ObsOptionalColumn.COMMENT)) {
String commentColumnName =
columnKey.format(
columnDisplayFormat,
maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 8 : null);
DataSetColumn obsDscComment =
new DataSetColumn(
commentColumnName + "_COMMENT", commentColumnName + "_COMMENT", String.class);
row.addColumnValue(obsDscComment, (obs != null) ? obs.getComment() : EMPTY);
}
}
}
dataSet.addRow(row);
}
return dataSet;
}
/**
* @return copied encounter provider
* @should copy all EncounterProvider data
*/
public EncounterProvider copy() {
EncounterProvider target = new EncounterProvider();
target.setChangedBy(getChangedBy());
target.setCreator(getCreator());
target.setDateChanged(getDateChanged());
target.setDateCreated(getDateCreated());
target.setDateVoided(getDateVoided());
target.setVoided(getVoided());
target.setVoidedBy(getVoidedBy());
target.setVoidReason(getVoidReason());
target.setEncounter(getEncounter());
target.setEncounterRole(getEncounterRole());
target.setProvider(getProvider());
return target;
}