/**
* * Get the concept by id, the id can either be 1)an integer id like 5090 or 2)mapping type id
* like "XYZ:HT" or 3)uuid like "a3e12268-74bf-11df-9768-17cfc9833272"
*
* @param Id
* @return the concept if exist, else null
* @should find a concept by its conceptId
* @should find a concept by its mapping
* @should find a concept by its uuid
* @should return null otherwise
*/
public static Concept getConcept(String id) {
Concept cpt = null;
if (id != null) {
try { // handle integer: id
int conceptId = Integer.parseInt(id);
cpt = Context.getConceptService().getConcept(conceptId);
return cpt;
} catch (Exception ex) {
// do nothing
}
// handle mapping id: xyz:ht
int index = id.indexOf(":");
if (index != -1) {
String mappingCode = id.substring(0, index).trim();
String conceptCode = id.substring(index + 1, id.length()).trim();
cpt = Context.getConceptService().getConceptByMapping(conceptCode, mappingCode);
return cpt;
}
// handle uuid id: "a3e1302b-74bf-11df-9768-17cfc9833272", if the id matches a uuid pattern
if (Pattern.compile("\\w+-\\w+-\\w+-\\w+-\\w+").matcher(id).matches()) {
cpt = Context.getConceptService().getConceptByUuid(id);
return cpt;
}
}
return cpt;
}
/** @see {@link DrugOrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should pass validation if all fields are correct",
method = "validate(Object,Errors)")
public void validate_shouldPassValidationIfAllFieldsAreCorrect() throws Exception {
DrugOrder order = new DrugOrder();
Encounter encounter = new Encounter();
Patient patient = Context.getPatientService().getPatient(2);
order.setConcept(Context.getConceptService().getConcept(88));
order.setOrderer(Context.getProviderService().getProvider(1));
order.setDosingType(DrugOrder.DosingType.FREE_TEXT);
order.setInstructions("Instructions");
order.setDosingInstructions("Test Instruction");
order.setPatient(patient);
encounter.setPatient(patient);
order.setEncounter(encounter);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.DAY_OF_MONTH, cal.get(Calendar.DAY_OF_MONTH) - 1);
order.setStartDate(cal.getTime());
order.setAutoExpireDate(new Date());
order.setOrderType(Context.getOrderService().getOrderTypeByName("Drug order"));
order.setDrug(Context.getConceptService().getDrug(3));
order.setCareSetting(Context.getOrderService().getCareSetting(1));
order.setQuantity(2.00);
order.setQuantityUnits(Context.getConceptService().getConcept(51));
order.setNumRefills(10);
Errors errors = new BindException(order, "order");
new DrugOrderValidator().validate(order, errors);
Assert.assertFalse(errors.hasErrors());
}
/**
* @see RegimenManager#findDefinitions(String, org.openmrs.module.kenyaemr.regimen.RegimenOrder,
* boolean)
*/
@Test
public void findDefinitions_shouldFindDefinitionsForRegimen() {
// Create regimen that matches the regimen2 definition exactly
DrugOrder lamivudine = new DrugOrder();
lamivudine.setConcept(Context.getConceptService().getConcept(78643));
lamivudine.setDose(150d);
lamivudine.setUnits("mg");
lamivudine.setFrequency("BD");
DrugOrder stavudine = new DrugOrder();
stavudine.setConcept(Context.getConceptService().getConcept(84309));
stavudine.setDose(30d);
stavudine.setUnits("mg");
stavudine.setFrequency("OD");
RegimenOrder regimen =
new RegimenOrder(new HashSet<DrugOrder>(Arrays.asList(lamivudine, stavudine)));
// Test exact match
List<RegimenDefinition> defsExact = regimenManager.findDefinitions("category1", regimen, true);
Assert.assertEquals(1, defsExact.size());
Assert.assertEquals("regimen2", defsExact.get(0).getName());
// Test non-exact match
List<RegimenDefinition> defsNonExact =
regimenManager.findDefinitions("category1", regimen, false);
Assert.assertEquals(2, defsNonExact.size());
Assert.assertEquals("regimen2", defsNonExact.get(0).getName());
Assert.assertEquals("regimen3", defsNonExact.get(1).getName());
}
/**
* Gets a concept by an identifier (mapping or UUID)
*
* @param identifier the identifier
* @return the concept
* @throws org.openmrs.module.metadatadeploy.MissingMetadataException if the concept could not be
* found
*/
public static Concept getConcept(String identifier) {
Concept concept;
if (identifier.contains(":")) {
String[] tokens = identifier.split(":");
concept = Context.getConceptService().getConceptByMapping(tokens[1].trim(), tokens[0].trim());
} else {
// Assume it's a UUID
concept = Context.getConceptService().getConceptByUuid(identifier);
}
if (concept == null) {
throw new MissingMetadataException(Concept.class, identifier);
}
// getConcept doesn't always return ConceptNumeric for numeric concepts
if (concept.getDatatype().isNumeric() && !(concept instanceof ConceptNumeric)) {
concept = Context.getConceptService().getConceptNumeric(concept.getId());
if (concept == null) {
throw new MissingMetadataException(ConceptNumeric.class, identifier);
}
}
return concept;
}
/**
* Sets the value of this obs to the specified valueBoolean if this obs has a boolean concept.
*
* @param valueBoolean the boolean value matching the boolean coded concept to set to
*/
public void setValueBoolean(Boolean valueBoolean) {
if (valueBoolean != null && getConcept() != null && getConcept().getDatatype().isBoolean())
setValueCoded(
valueBoolean.booleanValue()
? Context.getConceptService().getTrueConcept()
: Context.getConceptService().getFalseConcept());
else if (valueBoolean == null) setValueCoded(null);
}
@Test
@Verifies(
value = "should return encounter with all child objects voided according to schema",
method = "voidEncounterByHtmlFormSchema")
public void testVoidEncounterByHtmlFormSchema_shouldHandleDrugOrderCorrectly() throws Exception {
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
Encounter e = new Encounter();
e.setPatient(Context.getPatientService().getPatient(2));
Date date = Context.getDateFormat().parse("01/02/2003");
e.setDateCreated(new Date());
e.setEncounterDatetime(date);
e.setLocation(Context.getLocationService().getLocation(2));
e.setProvider(Context.getPersonService().getPerson(502));
TestUtil.addObs(e, 1, 5000, date); // a matching obs
DrugOrder dor = new DrugOrder();
dor.setVoided(false);
dor.setConcept(Context.getConceptService().getConcept(792));
dor.setCreator(Context.getUserService().getUser(1));
dor.setDateCreated(new Date());
dor.setDiscontinued(false);
dor.setDrug(Context.getConceptService().getDrug(2));
dor.setOrderType(Context.getOrderService().getOrderType(1));
dor.setPatient(Context.getPatientService().getPatient(2));
dor.setStartDate(new Date());
e.addOrder(dor);
Context.getEncounterService().saveEncounter(e);
Form form = new Form();
HtmlForm htmlform = new HtmlForm();
htmlform.setForm(form);
form.setEncounterType(new EncounterType());
htmlform.setDateChanged(new Date());
htmlform.setXmlData(
new TestUtil()
.loadXmlFromFile(
XML_DATASET_PATH + "returnSectionsAndConceptsInSectionsTestFormWithGroups.xml"));
HtmlFormEntryUtil.voidEncounterByHtmlFormSchema(e, htmlform, "test void reason");
// this is going to test out the voided state of the obs in the encounter after processing:
// order was matched, so order was voided, and because that's the only thing in the encounter,
// encounter was voided too.
Assert.assertTrue(e.isVoided());
Assert.assertTrue(e.getVoidReason().equals("test void reason"));
for (Order o : e.getOrders()) {
Assert.assertTrue(o.isVoided());
Assert.assertTrue(o.getVoidReason().equals("test void reason"));
}
for (Obs o : e.getAllObs(true)) {
Assert.assertTrue(o.getVoidReason().equals("test void reason"));
}
}
@Test
@Verifies(value = "should delete encounter correctly", method = "voidEncounterByHtmlFormSchema")
public void testVoidEncounterByHtmlFormSchema_shouldDeleteEncounter() throws Exception {
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
Encounter e = new Encounter();
e.setPatient(Context.getPatientService().getPatient(2));
Date date = Context.getDateFormat().parse("01/02/2003");
e.setDateCreated(new Date());
e.setEncounterDatetime(date);
e.setLocation(Context.getLocationService().getLocation(2));
e.setProvider(Context.getPersonService().getPerson(502));
TestUtil.addObs(e, 3, 5000, date); // adding an un-matched, voided Obs
for (Obs o : e.getAllObs(true)) {
o.setVoided(true);
o.setVoidedBy(Context.getUserService().getUser(1));
o.setVoidReason("blah");
o.setDateVoided(new Date());
}
// and adding a voided drug order
DrugOrder dor = new DrugOrder();
dor.setVoided(false);
dor.setConcept(Context.getConceptService().getConcept(792));
dor.setCreator(Context.getUserService().getUser(1));
dor.setDateCreated(new Date());
dor.setDiscontinued(false);
dor.setDrug(Context.getConceptService().getDrug(2));
dor.setOrderType(Context.getOrderService().getOrderType(1));
dor.setPatient(Context.getPatientService().getPatient(2));
dor.setVoided(true);
dor.setVoidedBy(Context.getUserService().getUser(1));
dor.setVoidReason("blah");
dor.setDateVoided(new Date());
dor.setStartDate(new Date());
e.addOrder(dor);
Context.getEncounterService().saveEncounter(e);
Form form = new Form();
HtmlForm htmlform = new HtmlForm();
htmlform.setForm(form);
form.setEncounterType(new EncounterType());
htmlform.setDateChanged(new Date());
htmlform.setXmlData(
new TestUtil()
.loadXmlFromFile(
XML_DATASET_PATH + "returnSectionsAndConceptsInSectionsTestFormWithGroups.xml"));
HtmlFormEntryUtil.voidEncounterByHtmlFormSchema(e, htmlform, null);
// encounter had no non-voided objects, should be voided
Assert.assertTrue(e.isVoided());
}
@Test
@Verifies(
value = "should return encounter with all child objects voided according to schema",
method = "voidEncounterByHtmlFormSchema")
public void testVoidEncounterByHtmlFormSchema_shouldHandleDrugOrderAndObsCorrectly()
throws Exception {
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
Encounter e = new Encounter();
e.setPatient(Context.getPatientService().getPatient(2));
Date date = Context.getDateFormat().parse("01/02/2003");
e.setDateCreated(new Date());
e.setEncounterDatetime(date);
e.setLocation(Context.getLocationService().getLocation(2));
e.setProvider(Context.getPersonService().getPerson(502));
TestUtil.addObs(e, 3, 5000, date); // adding an un-matched Obs
DrugOrder dor = new DrugOrder();
dor.setVoided(false);
dor.setConcept(Context.getConceptService().getConcept(792));
dor.setCreator(Context.getUserService().getUser(1));
dor.setDateCreated(new Date());
dor.setDiscontinued(false);
dor.setDrug(Context.getConceptService().getDrug(2));
dor.setOrderType(Context.getOrderService().getOrderType(1));
dor.setPatient(Context.getPatientService().getPatient(2));
dor.setStartDate(new Date());
e.addOrder(dor);
Context.getEncounterService().saveEncounter(e);
Form form = new Form();
HtmlForm htmlform = new HtmlForm();
htmlform.setForm(form);
form.setEncounterType(new EncounterType());
htmlform.setDateChanged(new Date());
htmlform.setXmlData(
new TestUtil()
.loadXmlFromFile(
XML_DATASET_PATH + "returnSectionsAndConceptsInSectionsTestFormWithGroups.xml"));
HtmlFormEntryUtil.voidEncounterByHtmlFormSchema(e, htmlform, null);
// order was matched, obs was not, so order should be voided, obs not, encounter not.
Assert.assertTrue(!e.isVoided());
for (Order o : e.getOrders()) {
Assert.assertTrue(o.isVoided());
}
for (Obs o : e.getObs()) {
Assert.assertTrue(!o.isVoided());
}
}
/**
* Processes requests to unretire a concept map type
*
* @param request the {@link WebRequest} object
* @param conceptMapType the concept map type object to unretire
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/unretireConceptMapType")
public String unretireConceptMapType(
WebRequest request, @ModelAttribute(value = "conceptMapType") ConceptMapType conceptMapType) {
try {
Context.getConceptService().unretireConceptMapType(conceptMapType);
if (log.isDebugEnabled()) {
log.debug("Unretired concept map type with id: " + conceptMapType.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.unretired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + CONCEPT_MAP_TYPE_LIST_URL + ".list";
} catch (APIException e) {
log.error("Error occurred while attempting to unretire concept map type", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.unretire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_MAP_TYPE_FORM;
}
/** @see Moh731CohortLibrary#revisitsArt() */
@Test
public void revisitsArt() throws Exception {
EncounterType hivConsult =
MetadataUtils.getEncounterType(HivMetadata._EncounterType.HIV_CONSULTATION);
Concept stavudine = Context.getConceptService().getConcept(84309);
// Start patient #6 this month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(6), stavudine, TestUtils.date(2012, 6, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(6), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #7 in previous month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(7), stavudine, TestUtils.date(2012, 5, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(7), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #8 and give them visit outside of reporting period + 2 month window
TestUtils.saveDrugOrder(TestUtils.getPatient(8), stavudine, TestUtils.date(2012, 1, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(8), hivConsult, TestUtils.date(2012, 1, 20));
CohortDefinition cd = moh731Cohorts.revisitsArt();
context.addParameterValue("fromDate", PERIOD_START);
context.addParameterValue("toDate", PERIOD_END);
EvaluatedCohort evaluated =
Context.getService(CohortDefinitionService.class).evaluate(cd, context);
ReportingTestUtils.assertCohortEquals(Arrays.asList(7), evaluated);
}
/**
* Processes requests to unretire concept reference terms
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel the concept reference term model object for the term to
* unretire
* @param retireReason the reason why the concept reference term is being unretired
* @return the url to redirect to
*/
@RequestMapping(
method = RequestMethod.POST,
value = "/admin/concepts/unretireConceptReferenceTerm")
public String unretireConceptReferenceTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel) {
try {
ConceptReferenceTerm conceptReferenceTerm =
conceptReferenceTermModel.getConceptReferenceTerm();
Context.getConceptService().unretireConceptReferenceTerm(conceptReferenceTerm);
if (log.isDebugEnabled()) {
log.debug("Unretired concept reference term with id: " + conceptReferenceTerm.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.unretired"),
WebRequest.SCOPE_SESSION);
return "redirect:"
+ CONCEPT_REFERENCE_TERM_FORM_URL
+ ".form?conceptReferenceTermId="
+ conceptReferenceTerm.getConceptReferenceTermId();
} catch (APIException e) {
log.error("Error occurred while unretiring concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.unretire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred, show the form
return CONCEPT_REFERENCE_TERM_FORM;
}
/**
* Processes requests to purge a concept reference term
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel
* @return the url to forward to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/purgeConceptReferenceTerm")
public String purgeTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel) {
Integer id = conceptReferenceTermModel.getConceptReferenceTerm().getId();
try {
Context.getConceptService()
.purgeConceptReferenceTerm(conceptReferenceTermModel.getConceptReferenceTerm());
if (log.isDebugEnabled()) {
log.debug("Purged concept reference term with id: " + id);
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.purged"),
WebRequest.SCOPE_SESSION);
return "redirect:" + FIND_CONCEPT_REFERENCE_TERM_URL;
} catch (APIException e) {
log.warn("Error occurred while attempting to purge concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.purge.error"),
WebRequest.SCOPE_SESSION);
}
// send the user back to form
return "redirect:" + CONCEPT_REFERENCE_TERM_FORM_URL + ".form?conceptReferenceTermId=" + id;
}
/**
* Processes requests to save/update a concept map type
*
* @param request the {@link WebRequest} object
* @param conceptMapType the concept map type object to save/update
* @param result the {@link BindingResult} object
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = CONCEPT_MAP_TYPE_FORM_URL)
public String saveConceptMapType(
WebRequest request,
@ModelAttribute("conceptMapType") ConceptMapType conceptMapType,
BindingResult result) {
new ConceptMapTypeValidator().validate(conceptMapType, result);
if (!result.hasErrors()) {
try {
Context.getConceptService().saveConceptMapType(conceptMapType);
if (log.isDebugEnabled()) {
log.debug("Saved concept map type: " + conceptMapType.toString());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR, "ConceptMapType.saved", WebRequest.SCOPE_SESSION);
return "redirect:" + CONCEPT_MAP_TYPE_LIST_URL + ".list";
} catch (APIException e) {
log.error("Error while saving concept map type(s)", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR, "ConceptMapType.save.error", WebRequest.SCOPE_SESSION);
}
}
// there was an error
return CONCEPT_MAP_TYPE_FORM;
}
/**
* Checks that a given concept map type object is valid.
*
* @see org.springframework.validation.Validator#validate(java.lang.Object,
* org.springframework.validation.Errors)
* @should fail if the concept map type object is null
* @should fail if the name is null
* @should fail if the name is an empty string
* @should fail if the name is a white space character
* @should fail if the concept map type name is a duplicate
* @should pass if the name is unique amongst all concept map type names
* @should pass validation if field lengths are correct
* @should fail validation if field lengths are not correct
*/
public void validate(Object obj, Errors errors) {
if (obj == null || !(obj instanceof ConceptMapType)) {
throw new IllegalArgumentException(
"The parameter obj should not be null and must be of type" + ConceptMapType.class);
}
ConceptMapType conceptMapType = (ConceptMapType) obj;
String name = conceptMapType.getName();
if (!StringUtils.hasText(name)) {
errors.rejectValue(
"name",
"ConceptMapType.error.nameRequired",
"The name property is required for a concept map type");
return;
}
name = name.trim();
ConceptMapType duplicate = Context.getConceptService().getConceptMapTypeByName(name);
if (duplicate != null
&& !OpenmrsUtil.nullSafeEquals(duplicate.getUuid(), conceptMapType.getUuid())) {
errors.rejectValue(
"name", "ConceptMapType.duplicate.name", "Duplicate concept map type name: " + name);
}
ValidateUtil.validateFieldLengths(
errors, obj.getClass(), "name", "description", "retireReason");
}
/**
* Coerces a value to a Boolean representation
*
* @return Boolean representation of the obs value
* @should return true for value_numeric concepts if value is 1
* @should return false for value_numeric concepts if value is 0
* @should return null for value_numeric concepts if value is neither 1 nor 0
*/
public Boolean getValueAsBoolean() {
if (getValueCoded() != null) {
if (getValueCoded().equals(Context.getConceptService().getTrueConcept())) {
return Boolean.TRUE;
} else if (getValueCoded().equals(Context.getConceptService().getFalseConcept())) {
return Boolean.FALSE;
}
} else if (getValueNumeric() != null) {
if (getValueNumeric() == 1) return Boolean.TRUE;
else if (getValueNumeric() == 0) return Boolean.FALSE;
}
// returning null is preferred to defaulting to false to support validation of user input is
// from a form
return null;
}
/** @see {@link OrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should pass validation if field lengths are correct",
method = "validate(Object,Errors)")
public void validate_shouldPassValidationIfFieldLengthsAreCorrect() throws Exception {
Order order = new Order();
Encounter encounter = new Encounter();
order.setConcept(Context.getConceptService().getConcept(88));
order.setOrderer(Context.getProviderService().getProvider(1));
Patient patient = Context.getPatientService().getPatient(2);
encounter.setPatient(patient);
order.setPatient(patient);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.DAY_OF_MONTH, cal.get(Calendar.DAY_OF_MONTH) - 1);
order.setDateActivated(cal.getTime());
order.setAutoExpireDate(new Date());
order.setCareSetting(new CareSetting());
order.setEncounter(encounter);
order.setUrgency(Order.Urgency.ROUTINE);
order.setAction(Order.Action.NEW);
order.setOrderReasonNonCoded("orderReasonNonCoded");
order.setAccessionNumber("accessionNumber");
order.setCommentToFulfiller("commentToFulfiller");
order.setVoidReason("voidReason");
Errors errors = new BindException(order, "order");
new OrderValidator().validate(order, errors);
Assert.assertFalse(errors.hasErrors());
}
/**
* Processes requests to retire a concept map type
*
* @param request the {@link WebRequest} object
* @param conceptMapType the concept map type object to retire
* @param retireReason the reason why the concept map type is getting retired
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/retireConceptMapType")
public String retireConceptMapType(
WebRequest request,
@ModelAttribute(value = "conceptMapType") ConceptMapType conceptMapType,
@RequestParam(required = false, value = "retireReason") String retireReason) {
if (!StringUtils.hasText(retireReason)) {
retireReason = Context.getMessageSourceService().getMessage("general.default.retireReason");
}
try {
Context.getConceptService().retireConceptMapType(conceptMapType, retireReason);
if (log.isDebugEnabled()) {
log.debug("Retired concept map type with id: " + conceptMapType.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.retired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + CONCEPT_MAP_TYPE_LIST_URL + ".list";
} catch (APIException e) {
log.error("Error occurred while attempting to retire concept map type", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.retire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_MAP_TYPE_FORM;
}
public void saveAndTransferFileComplexObs() {
try {
List<Encounter> encounters =
Context.getEncounterService().getEncounters(null, null, null, null, null, null, true);
Encounter lastEncounter = encounters.get(encounters.size() - 1);
Person patient = lastEncounter.getPatient();
ConceptComplex conceptComplex = Context.getConceptService().getConceptComplex(17);
Location location = Context.getLocationService().getDefaultLocation();
Obs obs = new Obs(patient, conceptComplex, new Date(), location);
String mergedUrl = tempFile.getCanonicalPath();
InputStream out1 = new FileInputStream(new File(mergedUrl));
ComplexData complexData = new ComplexData(tempFile.getName(), out1);
obs.setComplexData(complexData);
obs.setEncounter(lastEncounter);
Context.getObsService().saveObs(obs, null);
tempFile.delete();
} catch (Exception e) {
log.error(e);
}
}
/** @see {@link OrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should pass validation if all fields are correct",
method = "validate(Object,Errors)")
public void validate_shouldPassValidationIfAllFieldsAreCorrect() throws Exception {
Order order = new DrugOrder();
Encounter encounter = new Encounter();
order.setConcept(Context.getConceptService().getConcept(88));
order.setOrderer(Context.getProviderService().getProvider(1));
Patient patient = Context.getPatientService().getPatient(2);
encounter.setPatient(patient);
order.setPatient(patient);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.DAY_OF_MONTH, cal.get(Calendar.DAY_OF_MONTH) - 1);
order.setDateActivated(cal.getTime());
order.setAutoExpireDate(new Date());
order.setCareSetting(new CareSetting());
order.setEncounter(encounter);
order.setUrgency(Order.Urgency.ROUTINE);
order.setAction(Order.Action.NEW);
order.setOrderType(Context.getOrderService().getOrderTypeByName("Drug order"));
Errors errors = new BindException(order, "order");
new OrderValidator().validate(order, errors);
Assert.assertFalse(errors.hasErrors());
}
@Test
@Verifies(
value = "should return encounter with all child objects voided according to schema",
method = "voidEncounterByHtmlFormSchema")
public void testVoidEncounterByHtmlFormSchema_shouldReturnEncounterVoided() throws Exception {
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
Encounter e = new Encounter();
e.setPatient(Context.getPatientService().getPatient(2));
Date date = Context.getDateFormat().parse("01/02/2003");
e.setDateCreated(new Date());
e.setEncounterDatetime(date);
e.setLocation(Context.getLocationService().getLocation(2));
e.setProvider(Context.getPersonService().getPerson(502));
// add a bunch of obs...
TestUtil.addObs(e, 2474, Context.getConceptService().getConcept(656), date); // matches
Form form = new Form();
HtmlForm htmlform = new HtmlForm();
htmlform.setForm(form);
form.setEncounterType(new EncounterType());
htmlform.setDateChanged(new Date());
htmlform.setXmlData(
new TestUtil()
.loadXmlFromFile(
XML_DATASET_PATH + "returnSectionsAndConceptsInSectionsTestFormWithGroups.xml"));
HtmlFormEntryUtil.voidEncounterByHtmlFormSchema(e, htmlform, null);
// this is going to test out the voided state of the obs in the encounter after processing:
Assert.assertTrue(e.isVoided());
}
/**
* Processes requests to retire concept reference terms
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel the concept reference term model for the term to retire
* @param retireReason the reason why the concept reference term is being retired
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/retireConceptReferenceTerm")
public String retireConceptReferenceTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel,
@RequestParam(required = false, value = "retireReason") String retireReason) {
if (!StringUtils.hasText(retireReason)) {
retireReason = Context.getMessageSourceService().getMessage("general.default.retireReason");
}
try {
ConceptReferenceTerm conceptReferenceTerm =
conceptReferenceTermModel.getConceptReferenceTerm();
Context.getConceptService().retireConceptReferenceTerm(conceptReferenceTerm, retireReason);
if (log.isDebugEnabled()) {
log.debug("Retired concept reference term with id: " + conceptReferenceTerm.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.retired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + FIND_CONCEPT_REFERENCE_TERM_URL;
} catch (APIException e) {
log.error("Error occurred while retiring concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.retire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_REFERENCE_TERM_FORM;
}
/**
* Gets the specified concept (by mapping or UUID)
*
* @param identifier the mapping or UUID
* @return the concept
* @throws IllegalArgumentException if no such concept could be found
*/
public static Concept getConcept(String identifier) {
Concept concept = null;
if (identifier.contains(":")) {
String[] tokens = identifier.split(":");
concept = Context.getConceptService().getConceptByMapping(tokens[1].trim(), tokens[0].trim());
} else {
// Assume its a UUID
concept = Context.getConceptService().getConceptByUuid(identifier);
}
if (concept == null) {
throw new IllegalArgumentException("No concept with identifier '" + identifier + "'");
}
return concept;
}
@PropertyGetter("concept")
public Object getConcept(PersonAttributeType delegate) {
if (OpenmrsUtil.nullSafeEquals(delegate.getFormat(), Concept.class.getCanonicalName())) {
Concept concept = Context.getConceptService().getConcept(delegate.getForeignKey());
return ConversionUtil.convertToRepresentation(concept, Representation.FULL);
}
return null;
}
private void assertMappedCorrectly() {
Concept concept = Context.getConceptService().getConceptByUuid("23423a2982236623");
if (concept.isNumeric()) {
Assert.fail();
}
Assert.assertEquals("N/A", concept.getDatatype().getName());
}
/**
* Processes requests to display a list of the current concept map types in the database
*
* @param model the {@link ModelMap} object
* @param request the {@link WebRequest} object
*/
@RequestMapping(method = RequestMethod.GET, value = CONCEPT_MAP_TYPE_LIST_URL)
public void showConceptMapTypeList(ModelMap model, WebRequest request) {
ConceptService conceptService = Context.getConceptService();
List<ConceptMapType> conceptMapTypeList = null;
conceptMapTypeList = conceptService.getConceptMapTypes(true, true);
model.addAttribute("conceptMapTypeList", conceptMapTypeList);
}
/**
* Auto generated method comment
*
* @param conceptId
* @return
*/
public static String getConceptName(Integer conceptId) {
try {
if (null == conceptId) return "-";
Concept concept = Context.getConceptService().getConcept(conceptId);
return (concept != null) ? concept.getDisplayString() : "-";
} catch (Exception e) {
log.info(e.getMessage());
return "-";
}
}
@SuppressWarnings("unchecked")
@ModelAttribute("referenceTermMappingsToThisTerm")
public List<ConceptReferenceTermMap> getConceptMappingsToThisTerm(
@ModelAttribute ConceptReferenceTerm conceptReferenceTerm) {
if (conceptReferenceTerm.getConceptReferenceTermId() != null) {
return Context.getConceptService().getReferenceTermMappingsTo(conceptReferenceTerm);
}
return ListUtils.EMPTY_LIST;
}
/** @see {@link DrugOrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should fail validation if drug concept is different from order concept",
method = "validate(Object,Errors)")
public void validate_shouldFailValidationIfDrugConceptIsDifferentFromOrderConcept()
throws Exception {
DrugOrder order = new DrugOrder();
Drug drug = Context.getConceptService().getDrug(3);
Concept concept = Context.getConceptService().getConcept(792);
order.setDrug(drug);
order.setConcept(concept); // the actual concept which matches with drug is "88"
Assert.assertNotEquals(drug.getConcept(), concept);
Errors errors = new BindException(order, "order");
new DrugOrderValidator().validate(order, errors);
Assert.assertTrue(errors.hasFieldErrors("concept"));
Assert.assertTrue(errors.hasFieldErrors("drug"));
}
/**
* Auto generated method comment
*
* @param conceptId
* @return
*/
public static String checkIfConceptExistByIdAsString(String conceptId) {
String res = "";
try {
if (conceptId.trim().compareTo("") == 0) return res;
Concept concept = Context.getConceptService().getConcept(Integer.parseInt(conceptId));
res = (concept != null) ? "" + concept.getConceptId() : "";
} catch (Exception e) {
log.info(e.getMessage());
}
return res;
}
/**
* Auto generated method comment
*
* @param conceptId
* @return
*/
public static String getConceptNameByIdAsString(String conceptId) {
String res = "-";
try {
if (conceptId.trim().compareTo("") == 0) return "-";
Concept concept = Context.getConceptService().getConcept(Integer.parseInt(conceptId));
res = (concept != null) ? concept.getDisplayString() : "-";
} catch (Exception e) {
log.info(e.getMessage());
}
return res;
}