/** Modifies the existing password. */
private void changePassword() {
UserNotifier un;
if (!oldPassword.isVisible()) {
StringBuffer buf = new StringBuffer();
buf.append(passwordNew.getPassword());
String newPass = buf.toString();
if (newPass == null || newPass.length() == 0) {
un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo(PASSWORD_CHANGE_TITLE, "Please enter the new password.");
passwordNew.requestFocus();
return;
}
un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo(PASSWORD_CHANGE_TITLE, "Password changed.");
passwordNew.setText("");
model.resetPassword(newPass);
return;
}
StringBuffer buf = new StringBuffer();
buf.append(passwordNew.getPassword());
String newPass = buf.toString();
String pass = buf.toString();
buf = new StringBuffer();
buf.append(passwordConfirm.getPassword());
String confirm = buf.toString();
buf = new StringBuffer();
buf.append(oldPassword.getPassword());
String old = buf.toString();
if (old == null || old.trim().length() == 0) {
un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo(PASSWORD_CHANGE_TITLE, "Please specify your old password.");
oldPassword.requestFocus();
return;
}
if (newPass == null || newPass.length() == 0) {
un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo(PASSWORD_CHANGE_TITLE, "Please enter your new password.");
passwordNew.requestFocus();
return;
}
if (pass == null || confirm == null || confirm.length() == 0 || !pass.equals(confirm)) {
un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo(
PASSWORD_CHANGE_TITLE, "The passwords entered do not match. " + "Please try again.");
passwordNew.setText("");
passwordConfirm.setText("");
passwordNew.requestFocus();
return;
}
model.changePassword(old, confirm);
}
/**
* Creates or recycles the existing figure dialog.
*
* @param name The name to display.
* @param pixels The pixels object of reference.
* @param index One of the constants defined by this class.
* @return See above.
*/
FigureDialog createFigureDialog(String name, PixelsData pixels, int index) {
if (figureDialog != null) return figureDialog;
UserNotifier un = MetadataViewerAgent.getRegistry().getUserNotifier();
if (FigureDialog.needPixels(index) && pixels == null) {
un.notifyInfo("Figure", "The image is not valid," + " cannot create the figure.");
return null;
}
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
figureDialog = new FigureDialog(f, name, pixels, index, view.getRefObject().getClass());
figureDialog.addPropertyChangeListener(this);
return figureDialog;
}
/**
* Returns <code>true</code> if the user is an administrator, <code>false</code> otherwise.
*
* @return See above.
*/
private boolean isUserAdministrator() {
ExperimenterData user = (ExperimenterData) model.getRefObject();
ExperimenterData loggedInUser = MetadataViewerAgent.getUserDetails();
if (user.getId() == loggedInUser.getId()) return MetadataViewerAgent.isAdministrator();
List<GroupData> groups = user.getGroups();
Iterator<GroupData> i = groups.iterator();
GroupData g;
while (i.hasNext()) {
g = i.next();
if (GroupData.SYSTEM.equals(g.getName())) return true;
}
return false;
}
/** Brings up the folder chooser. */
private void export() {
DowngradeChooser chooser =
new DowngradeChooser(
new RefWindow(),
FileChooser.SAVE,
"Export",
"Select where to export the image as OME-TIFF.",
exportFilters);
try {
String path =
MetadataViewerAgent.getRegistry()
.getTaskBar()
.getLibFileRelative(TransformsParser.SPECIFICATION + ".jar");
chooser.parseData(path);
} catch (Exception e) {
LogMessage msg = new LogMessage();
msg.print(e);
MetadataViewerAgent.getRegistry().getLogger().debug(this, msg);
}
String s = UIUtilities.removeFileExtension(view.getRefObjectName());
if (s != null && s.trim().length() > 0) chooser.setSelectedFile(s);
chooser.setApproveButtonText("Export");
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.EXPORT_AS_OMETIFF_48));
chooser.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
File[] files = (File[]) evt.getNewValue();
File folder = files[0];
if (folder == null) folder = UIUtilities.getDefaultFolder();
Object src = evt.getSource();
Target target = null;
if (src instanceof DowngradeChooser) {
((FileChooser) src).setVisible(false);
((FileChooser) src).dispose();
target = ((DowngradeChooser) src).getSelectedSchema();
}
model.exportImageAsOMETIFF(folder, target);
} else if (DowngradeChooser.HELP_DOWNGRADE_PROPERTY.equals(name)) {
Registry reg = MetadataViewerAgent.getRegistry();
String url = (String) reg.lookup("HelpDowngrade");
reg.getTaskBar().openURL(url);
}
}
});
chooser.centerDialog();
}
/**
* Fires an asynchronous call to update the passed group.
*
* @param data The object to update.
* @param asynch Pass <code>true</code> to save data asynchronously, <code>false</code> otherwise.
*/
void fireAdminSaving(AdminObject data, boolean asynch) {
SecurityContext c = ctx;
if (MetadataViewerAgent.isAdministrator()) c = getAdminContext();
MetadataLoader loader;
GroupData group = data.getGroup();
switch (data.getIndex()) {
case AdminObject.UPDATE_GROUP:
loaderID++;
loader =
new GroupEditor(
component, c, group, data.getPermissions(), loaderID, GroupEditor.UPDATE);
loaders.put(loaderID, loader);
loader.load();
state = MetadataViewer.SAVING;
break;
case AdminObject.UPDATE_EXPERIMENTER:
loaderID++;
loader = new AdminEditor(component, c, data.getGroup(), data.getExperimenters(), loaderID);
loaders.put(loaderID, loader);
loader.load();
state = MetadataViewer.SAVING;
}
}
/** Opens the file. */
private void openFile() {
if (!(data instanceof FileAnnotationData)) return;
FileAnnotationData fa = (FileAnnotationData) data;
Registry reg = MetadataViewerAgent.getRegistry();
UserNotifier un = reg.getUserNotifier();
OriginalFile f = (OriginalFile) fa.getContent();
Environment env = (Environment) reg.lookup(LookupNames.ENV);
DownloadAndLaunchActivityParam activity;
final long dataId = fa.getId();
final File dir =
new File(env.getOmeroFilesHome() + File.separatorChar + "file annotation " + dataId);
if (!dir.exists()) {
dir.mkdir();
}
if (f != null && f.isLoaded()) {
activity = new DownloadAndLaunchActivityParam(f, dir, null);
} else {
activity =
new DownloadAndLaunchActivityParam(
dataId, DownloadAndLaunchActivityParam.FILE_ANNOTATION, dir, null);
}
un.notifyActivity(model.getSecurityContext(), activity);
return;
}
/** Brings up the dialog to choose the photo to upload. */
private void uploadPicture() {
UploadPictureDialog d =
new UploadPictureDialog(MetadataViewerAgent.getRegistry().getTaskBar().getFrame());
d.addPropertyChangeListener(this);
d.pack();
UIUtilities.centerAndShow(d);
}
/** Brings up the folder chooser. */
private void download() {
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f,
FileChooser.FOLDER_CHOOSER,
"Download",
"Select where to download the file.",
null,
true);
chooser.setSelectedFileFull(view.getRefObjectName());
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.DOWNLOAD_48));
chooser.setApproveButtonText("Download");
chooser.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
String path = (String) evt.getNewValue();
if (path == null) {
path = UIUtilities.getDefaultFolderAsString();
}
if (!path.endsWith(File.separator)) path += File.separator;
model.download(new File(path));
}
}
});
chooser.centerDialog();
}
/**
* Sets the rendering settings associated to the image.
*
* @param viewedBy The value to set.
*/
void setViewedBy(Map viewedBy) {
Map m = new LinkedHashMap();
if (viewedBy != null) {
long id = MetadataViewerAgent.getUserDetails().getId();
Entry entry;
Iterator i = viewedBy.entrySet().iterator();
ExperimenterData exp;
while (i.hasNext()) {
entry = (Entry) i.next();
exp = (ExperimenterData) entry.getKey();
if (exp.getId() == id) {
m.put(exp, entry.getValue());
}
}
i = viewedBy.entrySet().iterator();
while (i.hasNext()) {
entry = (Entry) i.next();
exp = (ExperimenterData) entry.getKey();
if (exp.getId() != id) {
m.put(exp, entry.getValue());
}
}
}
this.viewedBy = m;
}
/**
* Adds a new attachment.
*
* @param file The attachment to add.
*/
public void addAttachment(FileAnnotationData file) {
long userID = MetadataViewerAgent.getUserDetails().getId();
if (time == null) {
time = file.getLastModified();
resultsButton.setToolTipText("Analysis run " + UIUtilities.formatTime(time));
}
if (file.getOwner().getId() == userID) deleteButton.setVisible(true);
if (!attachments.contains(file)) attachments.add(file);
}
/** Launches a dialog to select the file to attach to the <code>DataObject</code>. */
private void selectFileToAttach() {
JFrame owner = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
owner, FileChooser.LOAD, "Choose File", "Select the file to attach.", filters, true);
chooser.setMultiSelectionEnabled(true);
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.ATTACHMENT_48));
chooser.setApproveButtonText("Attach");
chooser.addPropertyChangeListener(FileChooser.APPROVE_SELECTION_PROPERTY, this);
UIUtilities.centerAndShow(chooser);
}
/** Adds or edits the description of the tag. */
private void editDescription() {
if (!(data instanceof AnnotationData)) return;
String text = model.getAnnotationDescription((AnnotationData) data);
originalDescription = text;
SwingUtilities.convertPointToScreen(popupPoint, this);
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
int type = EditorDialog.EDIT_TYPE;
if (isModulo) type = EditorDialog.VIEW_TYPE;
EditorDialog d = new EditorDialog(f, (AnnotationData) data, false, type);
if (isModulo) d.allowEdit(false);
d.addPropertyChangeListener(this);
d.setOriginalDescription(originalDescription);
d.setSize(300, 250);
UIUtilities.showOnScreen(d, popupPoint);
}
/**
* Listens to property fired by the Editor dialog.
*
* @see PropertyChangeListener#propertyChange(PropertyChangeEvent)
*/
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
File[] files = (File[]) evt.getNewValue();
File folder = files[0];
if (folder == null) folder = UIUtilities.getDefaultFolder();
UserNotifier un = MetadataViewerAgent.getRegistry().getUserNotifier();
if (attachments == null || attachments.size() == 0) return;
IconManager icons = IconManager.getInstance();
DownloadAndZipParam param =
new DownloadAndZipParam(attachments, folder, icons.getIcon(IconManager.DOWNLOAD_22));
// TODO: review
// un.notifyActivity(param);
}
}
/** Brings up a dialog so that the user can select where to download the file. */
private void download() {
String name = null;
if (data instanceof FileAnnotationData) {
name = ((FileAnnotationData) data).getFileName();
}
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f, FileChooser.SAVE, "Download", "Select where to download the files.", null, true);
if (name != null && name.trim().length() > 0) chooser.setSelectedFileFull(name);
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.DOWNLOAD_48));
chooser.setApproveButtonText("Download");
chooser.addPropertyChangeListener(this);
chooser.centerDialog();
}
/**
* Creates a new object and sets its state to {@link MetadataViewer#NEW}.
*
* @param refObject The reference object.
* @param index One of the rendering constants defined by the <code>MetadataViewer</code> I/F.
*/
MetadataViewerModel(Object refObject, int index) {
state = MetadataViewer.NEW;
switch (index) {
case MetadataViewer.RND_GENERAL:
case MetadataViewer.RND_SPECIFIC:
this.index = index;
break;
default:
this.index = MetadataViewer.RND_GENERAL;
}
this.refObject = refObject;
loaderID = 0;
loaders = new HashMap<Integer, MetadataLoader>();
data = null;
dataType = null;
singleMode = true;
userID = MetadataViewerAgent.getUserDetails().getId();
}
/**
* Selects or not the {@link #ownerBox} if the selected user is an owner. Returns <code>true
* </code> if the currently logged in user is an owner of the group.
*
* @param group The group to handle.
*/
private boolean setGroupOwner(GroupData group) {
ExperimenterData ref = (ExperimenterData) model.getRefObject();
long userID = MetadataViewerAgent.getUserDetails().getId();
Set leaders = group.getLeaders();
ExperimenterData exp;
boolean isOwner = false;
if (leaders != null) {
Iterator i = leaders.iterator();
while (i.hasNext()) {
exp = (ExperimenterData) i.next();
if (exp.getId() == ref.getId()) {
groupOwner = true;
ownerBox.setSelected(true);
}
if (exp.getId() == userID) isOwner = true;
}
}
return isOwner;
}
/** Builds and lays out the UI. */
void buildGUI() {
removeAll();
initComponents();
setLayout(new GridBagLayout());
GridBagConstraints c = new GridBagConstraints();
c.fill = GridBagConstraints.HORIZONTAL;
c.anchor = GridBagConstraints.WEST;
c.insets = new Insets(0, 2, 2, 0);
c.gridx = 0;
c.gridy = 0;
c.gridwidth = GridBagConstraints.RELATIVE; // next-to-last
c.weightx = 1.0;
add(buildContentPanel(), c);
if (model.isUserOwner(model.getRefObject()) || MetadataViewerAgent.isAdministrator()) {
c.gridy++;
add(Box.createVerticalStrut(5), c);
c.gridy++;
add(buildPasswordPanel(), c);
}
}
/** Brings up the folder chooser to select where to save the files. */
private void saveAsJPEG() {
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f,
FileChooser.FOLDER_CHOOSER,
"Save As",
"Select where to save locally the images as JPEG.",
saveAsFilters);
String s = UIUtilities.removeFileExtension(view.getRefObjectName());
if (s != null && s.trim().length() > 0) chooser.setSelectedFile(s);
chooser.setApproveButtonText("Save");
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.SAVE_AS_48));
chooser.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
// File[] files = (File[]) evt.getNewValue();
String value = (String) evt.getNewValue();
File folder = null; // files[0];
if (value == null || value.trim().length() == 0)
folder = UIUtilities.getDefaultFolder();
else folder = new File(value);
Object src = evt.getSource();
if (src instanceof FileChooser) {
((FileChooser) src).setVisible(false);
((FileChooser) src).dispose();
}
model.saveAs(folder);
}
}
});
chooser.centerDialog();
}
/**
* Posts an event to view the protocol.
*
* @param protocolID The id of the protocol to view.
*/
private void viewProtocol(long protocolID) {
EventBus bus = MetadataViewerAgent.getRegistry().getEventBus();
bus.post(new EditFileEvent(model.getSecurityContext(), protocolID));
}
/**
* Posts an event to view the image.
*
* @param imageID The id of the image to view.
*/
private void viewImage(long imageID) {
EventBus bus = MetadataViewerAgent.getRegistry().getEventBus();
bus.post(new ViewImage(model.getSecurityContext(), new ViewImageObject(imageID), null));
}
/**
* Returns the user currently logged in.
*
* @return See above.
*/
ExperimenterData getCurrentUser() {
return MetadataViewerAgent.getUserDetails();
}
/** Launches RAPID. */
private void openFLIM() {
String url = (String) MetadataViewerAgent.getRegistry().lookup(LookupNames.RAPID);
MetadataViewerAgent.getRegistry().getTaskBar().openURL(url);
}
/**
* Listens to property fired by the Editor dialog.
*
* @see PropertyChangeListener#propertyChange(PropertyChangeEvent)
*/
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (EditorDialog.CREATE_NO_PARENT_PROPERTY.equals(name)) {
// reset text and tooltip
String text = "";
String description = "";
AnnotationData annotation = null;
if (data instanceof TagAnnotationData
|| data instanceof TermAnnotationData
|| data instanceof XMLAnnotationData) {
annotation = (AnnotationData) data;
text = annotation.getContentAsString();
text = EditorUtil.truncate(text, TEXT_LENGTH, false);
}
if (data instanceof DoubleAnnotationData) {
annotation = (AnnotationData) data;
text = "" + ((DoubleAnnotationData) data).getDataValue();
}
if (data instanceof LongAnnotationData) {
annotation = (AnnotationData) data;
text = "" + ((LongAnnotationData) data).getDataValue();
}
if (data instanceof BooleanAnnotationData) {
annotation = (AnnotationData) data;
text = "" + ((BooleanAnnotationData) data).getValue();
}
description = model.getAnnotationDescription(annotation);
if (annotation == null) return;
label.setText(text);
label.setToolTipText(formatToolTip(annotation, null));
originalName = text;
originalDescription = description;
firePropertyChange(AnnotationUI.EDIT_TAG_PROPERTY, null, this);
} else if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
if (data == null) return;
FileAnnotationData fa = (FileAnnotationData) data;
OriginalFile f = (OriginalFile) fa.getContent();
File folder;
Object o = evt.getNewValue();
if (o instanceof String) {
String path = (String) o;
if (!path.endsWith(File.separator)) {
path += File.separator;
}
path += fa.getFileName();
folder = new File(path);
} else {
File[] files = (File[]) o;
folder = files[0];
}
if (folder == null) folder = UIUtilities.getDefaultFolder();
UserNotifier un = MetadataViewerAgent.getRegistry().getUserNotifier();
IconManager icons = IconManager.getInstance();
DownloadActivityParam activity =
new DownloadActivityParam(f, folder, icons.getIcon(IconManager.DOWNLOAD_22));
// Check Name space
activity.setLegend(fa.getDescription());
un.notifyActivity(model.getSecurityContext(), activity);
}
}
/**
* Returns the experimenter to save.
*
* @return See above.
*/
Object getExperimenterToSave() {
ExperimenterData original = (ExperimenterData) model.getRefObject();
// Required fields first
String v = loginArea.getText();
if (v == null || v.trim().length() == 0) showRequiredField();
original.setLastName(v);
JTextField f = items.get(EditorUtil.EMAIL);
v = f.getText();
if (v == null || v.trim().length() == 0) v = ""; // showRequiredField();
original.setEmail(v);
f = items.get(EditorUtil.INSTITUTION);
v = f.getText();
if (v == null) v = "";
original.setInstitution(v.trim());
f = items.get(EditorUtil.LAST_NAME);
v = f.getText();
if (v == null) v = "";
original.setLastName(v.trim());
f = items.get(EditorUtil.FIRST_NAME);
v = f.getText();
if (v == null) v = "";
original.setFirstName(v.trim());
f = items.get(EditorUtil.MIDDLE_NAME);
v = f.getText();
if (v == null) v = "";
original.setMiddleName(v.trim());
// set the groups
GroupData g = null;
/*
if (selectedIndex != originalIndex) {
if (selectedIndex < groupData.length)
g = groupData[selectedIndex];
ExperimenterData user = (ExperimenterData) model.getRefObject();
List userGroups = user.getGroups();
List<GroupData> newGroups = new ArrayList<GroupData>();
if (g != null) newGroups.add(g);
Iterator i = userGroups.iterator();
long id = -1;
if (g != null) id = g.getId();
GroupData group;
while (i.hasNext()) {
group = (GroupData) i.next();
if (group.getId() != id)
newGroups.add(group);
}
//Need to see what to do b/c no ExperimenterGroupMap
original.setGroups(newGroups);
}
*/
String value = loginArea.getText().trim();
UserCredentials uc = new UserCredentials(value, "");
Boolean b = ownerBox.isSelected();
// if (g == null) g = original.getDefaultGroup();
boolean a = false;
if (b.compareTo(groupOwner) != 0) {
a = true;
uc.setOwner(b);
Object parent = model.getParentRootObject();
if (parent instanceof GroupData) {
Map<GroupData, Boolean> map = new HashMap<GroupData, Boolean>();
map.put((GroupData) parent, b);
uc.setGroupsOwner(map);
}
}
if (adminBox.isVisible()) {
b = adminBox.isSelected();
if (b.compareTo(admin) != 0) {
a = true;
uc.setAdministrator(b);
}
}
if (activeBox.isVisible()) {
b = activeBox.isSelected();
if (b.compareTo(active) != 0) {
a = true;
uc.setActive(b);
}
}
if (!original.getUserName().equals(value)) a = true;
// if admin
if (MetadataViewerAgent.isAdministrator()) a = true;
if (a) {
Map<ExperimenterData, UserCredentials> m = new HashMap<ExperimenterData, UserCredentials>();
m.put(original, uc);
AdminObject object = new AdminObject(g, m, AdminObject.UPDATE_EXPERIMENTER);
return object;
}
return original; // newOne;
}
/**
* Builds the UI component hosting the UI component used to modify the password.
*
* @return See above.
*/
private JPanel buildPasswordPanel() {
JPanel content = new JPanel();
content.setBackground(UIUtilities.BACKGROUND_COLOR);
Registry reg = MetadataViewerAgent.getRegistry();
String ldap = (String) reg.lookup(LookupNames.USER_AUTHENTICATION);
if (ldap != null && ldap.length() > 0) {
content.setBorder(BorderFactory.createTitledBorder("LDAP Authentication"));
content.setLayout(new FlowLayout(FlowLayout.LEFT));
content.add(new JLabel(ldap));
return content;
}
content.setBorder(BorderFactory.createTitledBorder("Change Password"));
content.setLayout(new GridBagLayout());
GridBagConstraints c = new GridBagConstraints();
c.fill = GridBagConstraints.HORIZONTAL;
c.anchor = GridBagConstraints.WEST;
c.insets = new Insets(0, 2, 2, 0);
c.gridx = 0;
c.gridy = 0;
c.gridwidth = GridBagConstraints.RELATIVE; // next-to-last
c.fill = GridBagConstraints.NONE; // reset to default
c.weightx = 0.0;
if (MetadataViewerAgent.isAdministrator()) {
content.add(UIUtilities.setTextFont(PASSWORD_NEW), c);
c.gridx++;
c.gridwidth = GridBagConstraints.REMAINDER; // end row
c.fill = GridBagConstraints.HORIZONTAL;
c.weightx = 1.0;
content.add(passwordNew, c);
} else {
content.add(UIUtilities.setTextFont(PASSWORD_OLD), c);
c.gridx++;
c.gridwidth = GridBagConstraints.REMAINDER; // end row
c.fill = GridBagConstraints.HORIZONTAL;
c.weightx = 1.0;
content.add(oldPassword, c);
c.gridy++;
c.gridx = 0;
c.gridwidth = GridBagConstraints.RELATIVE; // next-to-last
c.fill = GridBagConstraints.NONE; // reset to default
c.weightx = 0.0;
content.add(UIUtilities.setTextFont(PASSWORD_NEW), c);
c.gridx++;
c.gridwidth = GridBagConstraints.REMAINDER; // end row
c.fill = GridBagConstraints.HORIZONTAL;
c.weightx = 1.0;
content.add(passwordNew, c);
c.gridy++;
c.gridx = 0;
c.gridwidth = GridBagConstraints.RELATIVE; // next-to-last
c.fill = GridBagConstraints.NONE; // reset to default
c.weightx = 0.0;
content.add(UIUtilities.setTextFont(PASSWORD_CONFIRMATION), c);
c.gridx++;
c.gridwidth = GridBagConstraints.REMAINDER; // end row
c.fill = GridBagConstraints.HORIZONTAL;
c.weightx = 1.0;
content.add(passwordConfirm, c);
c.gridy++;
c.gridx = 0;
}
JPanel p = new JPanel();
p.setBackground(UIUtilities.BACKGROUND_COLOR);
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
p.add(content);
JPanel buttonPanel = UIUtilities.buildComponentPanel(passwordButton);
buttonPanel.setBackground(UIUtilities.BACKGROUND_COLOR);
p.add(buttonPanel);
return p;
}
/** Message displayed when one of the required fields is left blank. */
private void showRequiredField() {
UserNotifier un = MetadataViewerAgent.getRegistry().getUserNotifier();
un.notifyInfo("Edit Profile", "The required fields cannot be left " + "blank.");
return;
}
/**
* Reacts to property change.
*
* @see PropertyChangeListener#propertyChange(PropertyChangeEvent)
*/
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (SAVE_PROPERTY.equals(name)
|| DataComponent.DATA_MODIFIED_PROPERTY.equals(name)
|| PreviewPanel.PREVIEW_EDITED_PROPERTY.equals(name)) {
view.setDataToSave(view.hasDataToSave());
} else if (MetadataViewer.SAVE_DATA_PROPERTY.equals(name)) {
Boolean b = (Boolean) evt.getNewValue();
view.saveData(b.booleanValue());
} else if (MetadataViewer.CLEAR_SAVE_DATA_PROPERTY.equals(name)
|| MetadataViewer.ON_DATA_SAVE_PROPERTY.equals(name)
|| MetadataViewer.ADMIN_UPDATED_PROPERTY.equals(name)) {
view.clearData();
} else if (UIUtilities.COLLAPSED_PROPERTY_JXTASKPANE.equals(name)) {
view.handleTaskPaneCollapsed((JXTaskPane) evt.getSource());
} else if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
File[] files = (File[]) evt.getNewValue();
view.attachFiles(files);
} else if (AnnotationUI.REMOVE_ANNOTATION_PROPERTY.equals(name)) {
Object object = evt.getNewValue();
if (object instanceof DocComponent) {
DocComponent doc = (DocComponent) object;
Object data = doc.getData();
if (data instanceof File) view.removeAttachedFile(data);
else if (data instanceof FileAnnotationData) view.removeAttachedFile(data);
else if (data instanceof TagAnnotationData) view.removeObject((DataObject) data);
}
} else if (AnnotationUI.DELETE_ANNOTATION_PROPERTY.equals(name)) {
Object object = evt.getNewValue();
if (object instanceof DocComponent) {
DocComponent doc = (DocComponent) object;
Object data = doc.getData();
if (data instanceof FileAnnotationData) {
view.deleteAnnotation((FileAnnotationData) data);
view.removeAttachedFile(data);
}
} else if (object instanceof TextualAnnotationComponent) {
TextualAnnotationComponent doc = (TextualAnnotationComponent) object;
TextualAnnotationData data = doc.getData();
// view.deleteAnnotation((TextualAnnotationData) data);
view.removeObject(data);
}
} else if (AnnotationUI.EDIT_TAG_PROPERTY.equals(name)) {
Object object = evt.getNewValue();
if (object instanceof DocComponent) {
// Save the tag w/o update.
DataObject d = (DataObject) ((DocComponent) object).getData();
// Save the tag
OmeroMetadataService svc = MetadataViewerAgent.getRegistry().getMetadataService();
long id = MetadataViewerAgent.getUserDetails().getId();
try {
svc.saveData(model.getSecurityContext(), Arrays.asList(d), null, null, id);
} catch (Exception e) {
Logger l = MetadataViewerAgent.getRegistry().getLogger();
LogMessage msg = new LogMessage();
msg.print("Saving object");
msg.print(e);
l.error(this, msg);
}
}
} else if (OMEWikiComponent.WIKI_DATA_OBJECT_PROPERTY.equals(name)) {
WikiDataObject object = (WikiDataObject) evt.getNewValue();
long id;
switch (object.getIndex()) {
case WikiDataObject.IMAGE:
id = object.getId();
if (id < 0) viewImage(object.getName());
else viewImage(id);
break;
case WikiDataObject.PROTOCOL:
viewProtocol(object.getId());
break;
}
} else if (SelectionWizard.SELECTED_ITEMS_PROPERTY.equals(name)) {
Map m = (Map) evt.getNewValue();
if (m == null || m.size() != 1) return;
Set set = m.entrySet();
Entry entry;
Iterator i = set.iterator();
Class type;
while (i.hasNext()) {
entry = (Entry) i.next();
type = (Class) entry.getKey();
view.handleObjectsSelection(type, (Collection) entry.getValue());
}
} else if (PreviewPanel.OPEN_FILE_PROPERTY.equals(name)) {
Long id = (Long) evt.getNewValue();
if (id != null) viewProtocol(id.longValue());
} else if (MetadataViewer.SETTINGS_APPLIED_PROPERTY.equals(name)) {
model.loadRenderingControl(RenderingControlLoader.RELOAD);
view.onSettingsApplied(true);
} else if (MetadataViewer.ACTIVITY_OPTIONS_PROPERTY.equals(name)) {
List l = (List) evt.getNewValue();
view.activityOptions((Component) l.get(0), (Point) l.get(1), (Integer) l.get(2));
} else if (FigureDialog.CREATE_FIGURE_PROPERTY.equals(name)) {
view.createFigure(evt.getNewValue());
} else if (FigureDialog.CLOSE_FIGURE_PROPERTY.equals(name)) {
figureDialog = null;
} else if (MetadataViewer.CLOSE_RENDERER_PROPERTY.equals(name)) {
view.discardRenderer(evt.getNewValue());
} else if (MetadataViewer.RELATED_NODES_PROPERTY.equals(name)) {
view.onRelatedNodesSet();
} else if (ScriptingDialog.RUN_SELECTED_SCRIPT_PROPERTY.equals(name)) {
// view.manageScript((ScriptObject) evt.getNewValue(),
// MetadataViewer.RUN);
} else if (ScriptingDialog.DOWNLOAD_SELECTED_SCRIPT_PROPERTY.equals(name)) {
Object value = evt.getNewValue();
if (value instanceof ScriptObject)
view.manageScript((ScriptObject) value, MetadataViewer.DOWNLOAD);
else if (value instanceof String) {
ScriptObject script = view.getScriptFromName((String) value);
if (script != null) view.manageScript(script, MetadataViewer.DOWNLOAD);
}
} else if (ScriptingDialog.VIEW_SELECTED_SCRIPT_PROPERTY.equals(name)) {
Object value = evt.getNewValue();
if (value instanceof ScriptObject)
view.manageScript((ScriptObject) value, MetadataViewer.VIEW);
else if (value instanceof String) {
ScriptObject script = view.getScriptFromName((String) value);
if (script != null) view.manageScript(script, MetadataViewer.VIEW);
}
} else if (AnalysisResultsItem.ANALYSIS_RESULTS_DELETE.equals(name)) {
AnalysisResultsItem item = (AnalysisResultsItem) evt.getNewValue();
List<FileAnnotationData> list = item.getAttachments();
view.fireAnnotationsDeletion(list);
} else if (AnalysisResultsItem.ANALYSIS_RESULTS_VIEW.equals(name)) {
AnalysisResultsItem item = (AnalysisResultsItem) evt.getNewValue();
if (view.getRndIndex() == MetadataViewer.RND_GENERAL) {
model.displayAnalysisResults(item);
/*
ViewImage event = new ViewImage(item.getData(), null);
event.setAnalysis(item);
EventBus bus = MetadataViewerAgent.getRegistry().getEventBus();
bus.post(event);
*/
} else {
model.displayAnalysisResults(item);
}
} else if (AnalysisResultsItem.ANALYSIS_RESULTS_CANCEL.equals(name)) {
AnalysisResultsItem item = (AnalysisResultsItem) evt.getNewValue();
view.cancelAnalysisResultsLoading(item);
}
}
/**
* Fires an asynchronous call to modify the default group of the logged in experimenter.
*
* @param group
*/
void fireChangeGroup(GroupData group) {
SecurityContext c = ctx;
if (MetadataViewerAgent.isAdministrator()) c = getAdminContext();
MetadataLoader loader = new GroupEditor(component, c, group, loaderID, GroupEditor.CHANGE);
loader.load();
}
/**
* Handles events.
*
* @see ActionListener#actionPerformed(ActionEvent)
*/
public void actionPerformed(ActionEvent e) {
if (e.getSource() instanceof ScriptMenuItem) {
ScriptMenuItem item = (ScriptMenuItem) e.getSource();
if (item.isScriptWithUI()) {
switch (item.getIndex()) {
case ScriptMenuItem.MOVIE_FIGURE_SCRIPT:
model.createFigure(FigureDialog.MOVIE);
break;
case ScriptMenuItem.ROI_FIGURE_SCRIPT:
model.createFigure(FigureDialog.SPLIT_ROI);
break;
case ScriptMenuItem.THUMBNAIL_FIGURE_SCRIPT:
model.createFigure(FigureDialog.THUMBNAILS);
break;
case ScriptMenuItem.SPLIT_VIEW_FIGURE_SCRIPT:
model.createFigure(FigureDialog.SPLIT);
break;
case ScriptMenuItem.MOVIE_EXPORT_SCRIPT:
view.makeMovie(-1, null);
break;
case ScriptMenuItem.FLIM_SCRIPT:
openFLIM();
}
} else {
ScriptObject object = item.getScript();
if (!object.isParametersLoaded()) model.loadScript(object.getScriptID());
else model.setScript(object);
}
return;
}
int index = Integer.parseInt(e.getActionCommand());
switch (index) {
case ADD_LOCAL_DOCS:
selectFileToAttach();
break;
case ADD_UPLOADED_DOCS:
model.loadExistingAttachments();
break;
case SAVE:
view.saveData(true);
break;
case DOWNLOAD:
download();
break;
case ADD_TAGS:
loadExistingTags();
break;
case CREATE_NEW_EXPERIMENT:
view.createNewExperiment();
break;
case CREATE_MOVIE:
view.makeMovie(-1, null);
break;
case RENDERER:
model.loadRenderingControl(RenderingControlLoader.LOAD);
break;
case ANALYSE_FLIM:
view.analyse(AnalysisParam.FLIM);
break;
case ANALYSE_FRAP:
view.analyse(AnalysisParam.FRAP);
break;
case REFRESH:
model.refresh();
break;
case EXPORT_AS_OMETIFF:
export();
break;
case SPLIT_VIEW_FIGURE:
model.createFigure(FigureDialog.SPLIT);
break;
case SPLIT_VIEW_ROI_FIGURE:
model.createFigure(FigureDialog.SPLIT_ROI);
break;
case THUMBNAILS_FIGURE:
model.createFigure(FigureDialog.THUMBNAILS);
break;
case MOVIE_FIGURE:
model.createFigure(FigureDialog.MOVIE);
break;
case UPLOAD_SCRIPT:
view.uploadScript();
break;
case RELOAD_SCRIPT:
view.reloadScript();
break;
/*
case REMOVE_TAGS:
view.removeTags();
break;
case REMOVE_DOCS:
view.removeAttachedFiles();
break;
*/
case SAVE_AS:
saveAsJPEG();
break;
case VIEW_IMAGE:
Object refObject = view.getRefObject();
ImageData img = null;
if (refObject instanceof ImageData) {
img = (ImageData) refObject;
} else if (refObject instanceof WellSampleData) {
img = ((WellSampleData) refObject).getImage();
}
if (img != null) {
ViewImageObject vio = new ViewImageObject(img);
MetadataViewerAgent.getRegistry()
.getEventBus()
.post(new ViewImage(model.getSecurityContext(), vio, null));
}
break;
case VIEW_IMAGE_IN_IJ:
Object object = view.getRefObject();
ImageData image = null;
if (object instanceof ImageData) {
image = (ImageData) object;
} else if (object instanceof WellSampleData) {
image = ((WellSampleData) object).getImage();
}
if (image != null) {
ViewInPluginEvent event =
new ViewInPluginEvent(
model.getSecurityContext(), (DataObject) object, MetadataViewer.IMAGE_J);
MetadataViewerAgent.getRegistry().getEventBus().post(event);
}
}
}
/**
* Returns the security context.
*
* @return See above.
*/
SecurityContext getAdminContext() {
if (MetadataViewerAgent.isAdministrator()) return MetadataViewerAgent.getAdminContext();
return null;
}