/**
* The average number of columns per input, taking into account the topology of the inputs and
* columns. This value is used to calculate the inhibition radius. This function supports an
* arbitrary number of dimensions. If the number of column dimensions does not match the number of
* input dimensions, we treat the missing, or phantom dimensions as 'ones'.
*
* @param c the {@link Connections} (spatial pooler memory)
* @return
*/
public double avgColumnsPerInput(Connections c) {
int[] colDim = Arrays.copyOf(c.getColumnDimensions(), c.getColumnDimensions().length);
int[] inputDim = Arrays.copyOf(c.getInputDimensions(), c.getInputDimensions().length);
double[] columnsPerInput =
ArrayUtils.divide(
ArrayUtils.toDoubleArray(colDim), ArrayUtils.toDoubleArray(inputDim), 0, 0);
return ArrayUtils.average(columnsPerInput);
}
/**
* Called to initialize the structural anatomy with configured values and prepare the anatomical
* entities for activation.
*
* @param c
*/
public void initMatrices(final Connections c) {
SparseObjectMatrix<Column> mem = c.getMemory();
c.setMemory(mem == null ? mem = new SparseObjectMatrix<>(c.getColumnDimensions()) : mem);
c.setInputMatrix(new SparseBinaryMatrix(c.getInputDimensions()));
// Calculate numInputs and numColumns
int numInputs = c.getInputMatrix().getMaxIndex() + 1;
int numColumns = c.getMemory().getMaxIndex() + 1;
if (numColumns <= 0) {
throw new InvalidSPParamValueException("Invalid number of columns: " + numColumns);
}
if (numInputs <= 0) {
throw new InvalidSPParamValueException("Invalid number of inputs: " + numInputs);
}
c.setNumInputs(numInputs);
c.setNumColumns(numColumns);
// Fill the sparse matrix with column objects
for (int i = 0; i < numColumns; i++) {
mem.set(i, new Column(c.getCellsPerColumn(), i));
}
c.setPotentialPools(new SparseObjectMatrix<Pool>(c.getMemory().getDimensions()));
c.setConnectedMatrix(new SparseBinaryMatrix(new int[] {numColumns, numInputs}));
// Initialize state meta-management statistics
c.setOverlapDutyCycles(new double[numColumns]);
c.setActiveDutyCycles(new double[numColumns]);
c.setMinOverlapDutyCycles(new double[numColumns]);
c.setMinActiveDutyCycles(new double[numColumns]);
c.setBoostFactors(new double[numColumns]);
Arrays.fill(c.getBoostFactors(), 1);
}
/**
* Maps a column to its respective input index, keeping to the topology of the region. It takes
* the index of the column as an argument and determines what is the index of the flattened input
* vector that is to be the center of the column's potential pool. It distributes the columns over
* the inputs uniformly. The return value is an integer representing the index of the input bit.
* Examples of the expected output of this method: * If the topology is one dimensional, and the
* column index is 0, this method will return the input index 0. If the column index is 1, and
* there are 3 columns over 7 inputs, this method will return the input index 3. * If the topology
* is two dimensional, with column dimensions [3, 5] and input dimensions [7, 11], and the column
* index is 3, the method returns input index 8.
*
* @param columnIndex The index identifying a column in the permanence, potential and connectivity
* matrices.
* @return A boolean value indicating that boundaries should be ignored.
*/
public int mapColumn(Connections c, int columnIndex) {
int[] columnCoords = c.getMemory().computeCoordinates(columnIndex);
double[] colCoords = ArrayUtils.toDoubleArray(columnCoords);
double[] ratios =
ArrayUtils.divide(colCoords, ArrayUtils.toDoubleArray(c.getColumnDimensions()), 0, 0);
double[] inputCoords =
ArrayUtils.multiply(ArrayUtils.toDoubleArray(c.getInputDimensions()), ratios, 0, 0);
inputCoords =
ArrayUtils.d_add(
inputCoords,
ArrayUtils.multiply(
ArrayUtils.divide(
ArrayUtils.toDoubleArray(c.getInputDimensions()),
ArrayUtils.toDoubleArray(c.getColumnDimensions()),
0,
0),
0.5));
int[] inputCoordInts =
ArrayUtils.clip(ArrayUtils.toIntArray(inputCoords), c.getInputDimensions(), -1);
return c.getInputMatrix().computeIndex(inputCoordInts);
}
/**
* Performs inhibition. This method calculates the necessary values needed to actually perform
* inhibition and then delegates the task of picking the active columns to helper functions.
*
* @param c the {@link Connections} matrix
* @param overlaps an array containing the overlap score for each column. The overlap score for a
* column is defined as the number of synapses in a "connected state" (connected synapses)
* that are connected to input bits which are turned on.
* @return
*/
public int[] inhibitColumns(Connections c, double[] overlaps) {
overlaps = Arrays.copyOf(overlaps, overlaps.length);
double density;
double inhibitionArea;
if ((density = c.getLocalAreaDensity()) <= 0) {
inhibitionArea = Math.pow(2 * c.getInhibitionRadius() + 1, c.getColumnDimensions().length);
inhibitionArea = Math.min(c.getNumColumns(), inhibitionArea);
density = c.getNumActiveColumnsPerInhArea() / inhibitionArea;
density = Math.min(density, 0.5);
}
// Add our fixed little bit of random noise to the scores to help break ties.
// ArrayUtils.d_add(overlaps, c.getTieBreaker());
if (c.getGlobalInhibition()
|| c.getInhibitionRadius() > ArrayUtils.max(c.getColumnDimensions())) {
return inhibitColumnsGlobal(c, overlaps, density);
}
return inhibitColumnsLocal(c, overlaps, density);
}
/**
* Update the inhibition radius. The inhibition radius is a measure of the square (or hypersquare)
* of columns that each a column is "connected to" on average. Since columns are are not connected
* to each other directly, we determine this quantity by first figuring out how many *inputs* a
* column is connected to, and then multiplying it by the total number of columns that exist for
* each input. For multiple dimension the aforementioned calculations are averaged over all
* dimensions of inputs and columns. This value is meaningless if global inhibition is enabled.
*
* @param c the {@link Connections} (spatial pooler memory)
*/
public void updateInhibitionRadius(Connections c) {
if (c.getGlobalInhibition()) {
c.setInhibitionRadius(ArrayUtils.max(c.getColumnDimensions()));
return;
}
TDoubleArrayList avgCollected = new TDoubleArrayList();
int len = c.getNumColumns();
for (int i = 0; i < len; i++) {
avgCollected.add(avgConnectedSpanForColumnND(c, i));
}
double avgConnectedSpan = ArrayUtils.average(avgCollected.toArray());
double diameter = avgConnectedSpan * avgColumnsPerInput(c);
double radius = (diameter - 1) / 2.0d;
radius = Math.max(1, radius);
c.setInhibitionRadius((int) Math.round(radius));
}