@Override
public void generate(Model model, MolgenisOptions options) throws Exception {
Template template = createTemplate("/" + this.getClass().getSimpleName() + ".java.ftl");
Map<String, Object> templateArgs = createTemplateArguments(options);
List<Entity> entityList = model.getEntities();
entityList = MolgenisModel.sortEntitiesByDependency(entityList, model); // side
// effect?
File target = new File(this.getSourcePath(options) + "/test/TestDataSet.java");
boolean created = target.getParentFile().mkdirs();
if (!created && !target.getParentFile().exists()) {
throw new IOException("could not create " + target.getParentFile());
}
String packageName = "test";
templateArgs.put(
"databaseImp",
options.mapper_implementation.equals(MolgenisOptions.MapperImplementation.JPA)
? "jpa"
: "jdbc");
templateArgs.put("model", model);
templateArgs.put("entities", entityList);
templateArgs.put("package", packageName);
OutputStream targetOut = new FileOutputStream(target);
template.process(templateArgs, new OutputStreamWriter(targetOut, Charset.forName("UTF-8")));
targetOut.close();
logger.info("generated " + target);
}
@Override
public void generate(Model model, MolgenisOptions options) throws Exception {
Template template = createTemplate("/" + getClass().getSimpleName() + ".java.ftl");
Map<String, Object> templateArgs = createTemplateArguments(options);
File target = new File(this.getDocumentationPath(options) + "/entitymodel.html");
target.getParentFile().mkdirs();
List<Entity> entityList = model.getEntities();
List<Module> moduleList = model.getModules();
entityList = MolgenisModel.sortEntitiesByDependency(entityList, model); // side effect?
templateArgs.put("model", model);
templateArgs.put("entities", entityList);
templateArgs.put("modules", moduleList);
OutputStream targetOut = new FileOutputStream(target);
template.process(templateArgs, new OutputStreamWriter(targetOut));
targetOut.close();
logger.info("generated " + target);
}
@Override
public void generate(Model model, MolgenisOptions options) throws Exception {
Template template = createTemplate("/" + this.getClass().getSimpleName() + ".java.ftl");
Map<String, Object> templateArgs = createTemplateArguments(options);
List<Entity> entityList = model.getEntities();
entityList = MolgenisModel.sortEntitiesByDependency(entityList, model); // side effect?
// String packageName =
// this.getClass().getPackage().toString().substring(Generator.class.getPackage().toString().length());
File target = new File(this.getSourcePath(options) + APP_DIR + "/ExcelImport.java");
target.getParentFile().mkdirs();
templateArgs.put("model", model);
templateArgs.put("entities", entityList);
templateArgs.put("package", APP_DIR);
OutputStream targetOut = new FileOutputStream(target);
template.process(templateArgs, new OutputStreamWriter(targetOut));
targetOut.close();
logger.info("generated " + target);
}
@Override
public void generate(Model model, MolgenisOptions options) throws Exception {
Template template = createTemplate("/" + this.getClass().getSimpleName() + ".java.ftl");
Map<String, Object> templateArgs = createTemplateArguments(options);
List<Entity> entityList = model.getEntities();
entityList = MolgenisModel.sortEntitiesByDependency(entityList, model); // side
// effect?
File target = new File(this.getSourcePath(options) + APP_DIR + "/CsvEntityExporter.java");
boolean created = target.getParentFile().mkdirs();
if (!created && !target.getParentFile().exists()) {
throw new IOException("could not create " + target.getParentFile());
}
templateArgs.put("model", model);
templateArgs.put("entities", entityList);
templateArgs.put("package", APP_DIR);
OutputStream targetOut = new FileOutputStream(target);
template.process(templateArgs, new OutputStreamWriter(targetOut, Charset.forName("UTF-8")));
targetOut.close();
logger.info("generated " + target);
}
/**
* Construct a MOLGENIS generator
*
* @param options with generator settings
* @param generatorsToUse optional list of generator classes to include
* @throws Exception
*/
public <E extends Generator> Molgenis(
MolgenisOptions options, String outputPath, Class<? extends Generator>... generatorsToUse)
throws Exception {
BasicConfigurator.configure();
this.loadFieldTypes();
this.options = options;
Logger.getLogger("freemarker.cache").setLevel(Level.INFO);
logger.info("\nMOLGENIS version " + org.molgenis.Version.convertToString());
logger.info("working dir: " + System.getProperty("user.dir"));
// clean options
if (outputPath != null) {
// workaround for java string escaping bug in freemarker (see
// UsedMolgenisOptionsGen.ftl)
outputPath = outputPath.replace('\\', '/');
if (!outputPath.endsWith("/")) outputPath = outputPath + "/";
}
options.output_src = outputPath != null ? outputPath + options.output_src : options.output_src;
if (!options.output_src.endsWith("/"))
options.output_src = options.output_src.endsWith("/") + "/";
options.output_hand =
outputPath != null ? outputPath + options.output_hand : options.output_hand;
if (!options.output_hand.endsWith("/")) options.output_hand = options.output_hand + "/";
options.output_web = outputPath != null ? outputPath + options.output_web : options.output_web;
if (!options.output_web.endsWith("/")) options.output_web = options.output_web + "/";
options.output_doc = outputPath != null ? outputPath + options.output_doc : options.output_doc;
if (!options.output_doc.endsWith("/")) options.output_doc = options.output_doc + "/";
// DOCUMENTATION
if (options.generate_doc) {
generators.add(new FileFormatDocGen());
// check if dot is available to prevent error lists in the build logs
try {
Runtime.getRuntime().exec("dot -?");
generators.add(new DotDocGen());
generators.add(new DotDocMinimalGen());
} catch (Exception e) {
// dot not available
}
generators.add(new ObjectModelDocGen());
generators.add(new DotDocModuleDependencyGen());
} else {
logger.info("Skipping documentation ....");
}
if (options.generate_jpa) {
if (options.generate_db) {
generators.add(new DatabaseConfigGen());
}
generators.add(new DataTypeGen());
generators.add(new EntityMetaDataGen());
generators.add(new JpaRepositoryGen());
generators.add(new JDBCMetaDatabaseGen());
if (options.generate_persistence) {
generators.add(new PersistenceGen());
}
if (options.generate_jpa_repository_source) {
generators.add(new JpaRepositorySourceGen());
}
} else {
logger.info("SEVERE: Skipping ALL SQL ....");
}
if (options.generate_entityio) {
generators.add(new EntitiesImporterGen());
generators.add(new EntitiesValidatorGen());
}
// clean out generators
List<Generator> use = new ArrayList<Generator>();
if (!ArrayUtils.isEmpty(generatorsToUse)) {
for (Class<? extends Generator> c : generatorsToUse) {
use.add(c.newInstance());
}
generators = use;
}
logger.debug("\nUsing generators:\n" + toString());
// parsing model
model = MolgenisModel.parse(options);
}
