@BeforeTest
public void createEntity() {
entityType = when(mock(EntityType.class).getName()).thenReturn("Source").getMock();
Attribute idAttr = when(mock(Attribute.class).getName()).thenReturn("Identifier").getMock();
when(idAttr.getDataType()).thenReturn(INT);
Attribute intAttr = when(mock(Attribute.class).getName()).thenReturn("Int").getMock();
when(intAttr.getDataType()).thenReturn(INT);
Attribute stringAttr = when(mock(Attribute.class).getName()).thenReturn("String").getMock();
when(stringAttr.getDataType()).thenReturn(STRING);
Attribute nonNumericStringAttr =
when(mock(Attribute.class).getName()).thenReturn("NonNumericString").getMock();
when(nonNumericStringAttr.getDataType()).thenReturn(STRING);
Attribute longAttr = when(mock(Attribute.class).getName()).thenReturn("Long").getMock();
when(longAttr.getDataType()).thenReturn(LONG);
when(entityType.getIdAttribute()).thenReturn(idAttr);
when(entityType.getAttribute("Identifier")).thenReturn(idAttr);
when(entityType.getAttribute("Int")).thenReturn(intAttr);
when(entityType.getAttribute("String")).thenReturn(stringAttr);
when(entityType.getAttribute("NonNumericString")).thenReturn(nonNumericStringAttr);
when(entityType.getAttribute("Long")).thenReturn(longAttr);
entity = new DynamicEntity(entityType);
entity.set("Int", 1);
entity.set("String", "12");
entity.set("Long", 10L);
entity.set("NonNumericString", "Hello World!");
}
@Test
public void checkRangeMaxOnly() {
Entity entity = new DynamicEntity(intRangeMaxMeta);
entity.set("id", "123");
entity.set("intrangemin", 0);
Set<ConstraintViolation> constraints =
entityAttributesValidator.validate(entity, intRangeMaxMeta);
assertTrue(constraints.isEmpty());
}
@Test
public void checkRangeMaxOnlyInvalid() {
Entity entity = new DynamicEntity(intRangeMaxMeta);
entity.set("id", "123");
entity.set("intrangemin", 2);
Set<ConstraintViolation> constraints =
entityAttributesValidator.validate(entity, intRangeMaxMeta);
assertEquals(constraints.size(), 1);
}
private Entity toEntityMappingEntity(
EntityMapping entityMapping, List<Entity> attributeMappingEntities) {
Entity entityMappingEntity = new DynamicEntity(entityMappingMetaData);
entityMappingEntity.set(EntityMappingMetaData.IDENTIFIER, entityMapping.getIdentifier());
entityMappingEntity.set(EntityMappingMetaData.SOURCE_ENTITY_TYPE, entityMapping.getName());
entityMappingEntity.set(
EntityMappingMetaData.TARGET_ENTITY_TYPE,
entityMapping.getTargetEntityType() != null
? entityMapping.getTargetEntityType().getName()
: null);
entityMappingEntity.set(EntityMappingMetaData.ATTRIBUTE_MAPPINGS, attributeMappingEntities);
return entityMappingEntity;
}
private Entity toEntityMappingEntity(
EntityMapping entityMapping, List<Entity> attributeMappingEntities) {
Entity entityMappingEntity = new MapEntity(META_DATA);
entityMappingEntity.set(EntityMappingMetaData.IDENTIFIER, entityMapping.getIdentifier());
entityMappingEntity.set(EntityMappingMetaData.SOURCEENTITYMETADATA, entityMapping.getName());
entityMappingEntity.set(
EntityMappingMetaData.TARGETENTITYMETADATA,
entityMapping.getTargetEntityMetaData() != null
? entityMapping.getTargetEntityMetaData().getName()
: null);
entityMappingEntity.set(EntityMappingMetaData.ATTRIBUTEMAPPINGS, attributeMappingEntities);
return entityMappingEntity;
}
@BeforeMethod
public void beforeMethod() {
owner = new MolgenisUser();
owner.setUsername("flup");
owner.setPassword("geheim");
owner.setId("12345");
owner.setActive(true);
owner.setEmail("*****@*****.**");
owner.setFirstName("Flup");
owner.setLastName("de Flap");
DefaultEntityMetaData target1 = new DefaultEntityMetaData("target1");
target1.addAttribute("id", ROLE_ID);
DefaultEntityMetaData target2 = new DefaultEntityMetaData("target2");
target2.addAttribute("id", ROLE_ID);
mappingProject = new MappingProject("My first mapping project", owner);
mappingTarget1 = mappingProject.addTarget(target1);
mappingTarget2 = mappingProject.addTarget(target2);
Entity mappingTargetEntity = new MapEntity(MappingTargetRepositoryImpl.META_DATA);
mappingTargetEntity.set(MappingTargetMetaData.TARGET, "target1");
mappingTargetEntity.set(MappingTargetMetaData.IDENTIFIER, "mappingTargetID1");
Entity mappingTargetEntity2 = new MapEntity(MappingTargetRepositoryImpl.META_DATA);
mappingTargetEntity2.set(MappingTargetMetaData.TARGET, "target2");
mappingTargetEntity2.set(MappingTargetMetaData.IDENTIFIER, "mappingTargetID2");
mappingTargetEntities = asList(mappingTargetEntity, mappingTargetEntity2);
mappingProjectEntity = new MapEntity(META_DATA);
mappingProjectEntity.set(IDENTIFIER, "mappingProjectID");
mappingProjectEntity.set(MAPPINGTARGETS, mappingTargetEntities);
mappingProjectEntity.set(OWNER, owner);
mappingProjectEntity.set(NAME, "My first mapping project");
}
@Override
public void populateTestEntity(Entity entity) throws Exception {
entity.set("col1", sdf.parse("2012-03-13 23:59:33"));
entity.set("col2", sdf.parse("2013-02-09 13:12:11"));
assertEquals(entity.getUtilDate("col1"), sdf.parse("2012-03-13 23:59:33"));
assertEquals(entity.getUtilDate("col2"), sdf.parse("2013-02-09 13:12:11"));
}
@Override
public Entity createTestEntity() {
Entity e = new MapEntity();
e.set("col1", "lorem");
e.set("col2", "ipsum");
return e;
}
/**
* @param entityName The name of the entity to update
* @param attributeName The name of the attribute to update
* @param request EntityCollectionBatchRequestV2
* @param response HttpServletResponse
* @throws Exception
*/
@RequestMapping(value = "/{entityName}/{attributeName}", method = PUT)
@ResponseStatus(OK)
public synchronized void updateAttribute(
@PathVariable("entityName") String entityName,
@PathVariable("attributeName") String attributeName,
@RequestBody @Valid EntityCollectionBatchRequestV2 request,
HttpServletResponse response)
throws Exception {
final EntityMetaData meta = dataService.getEntityMetaData(entityName);
if (meta == null) {
throw createUnknownEntityException(entityName);
}
try {
AttributeMetaData attr = meta.getAttribute(attributeName);
if (attr == null) {
throw createUnknownAttributeException(entityName, attributeName);
}
if (attr.isReadonly()) {
throw createMolgenisDataAccessExceptionReadOnlyAttribute(entityName, attributeName);
}
final List<Entity> entities =
request
.getEntities()
.stream()
.filter(e -> e.size() == 2)
.map(e -> this.restService.toEntity(meta, e))
.collect(Collectors.toList());
if (entities.size() != request.getEntities().size()) {
throw createMolgenisDataExceptionIdentifierAndValue();
}
final List<Entity> updatedEntities = new ArrayList<Entity>();
int count = 0;
for (Entity entity : entities) {
String id = checkForEntityId(entity, count);
Entity originalEntity = dataService.findOne(entityName, id);
if (originalEntity == null) {
throw createUnknownEntityExceptionNotValidId(id);
}
Object value = this.restService.toEntityValue(attr, entity.get(attributeName));
originalEntity.set(attributeName, value);
updatedEntities.add(originalEntity);
count++;
}
// update all entities
this.dataService.update(entityName, updatedEntities.stream());
response.setStatus(HttpServletResponse.SC_OK);
} catch (Exception e) {
response.setStatus(HttpServletResponse.SC_NO_CONTENT);
throw e;
}
}
private void toEntity(
EntityMetaData emd, Map<String, Entity> entities, Map<String, Entity> attributes) {
// TODO prevent duplicates
Entity e = new MapEntity();
e.set("name", emd.getName());
entities.put(emd.getName(), e);
logger.debug("entity: " + e);
for (AttributeMetaData amd : emd.getAttributes()) {
Entity a = new MapEntity();
a.set("name", amd.getName());
a.set("entity", emd.getName());
if (amd.getDataType() != null && amd.getDataType() != MolgenisFieldTypes.STRING)
a.set("dataType", amd.getDataType());
if (amd.getDefaultValue() != null) a.set("defaultValue", amd.getDefaultValue());
if (amd.getRefEntity() != null) a.set("refEntity", amd.getRefEntity().getName());
logger.debug("attribute: " + a);
attributes.put(emd.getName() + "." + amd.getName(), a);
// compound
if (amd.getDataType() == MolgenisFieldTypes.COMPOUND
&& entities.get(amd.getRefEntity().getName()) == null) {
this.toEntity(amd.getRefEntity(), entities, attributes);
}
}
}
Entity getDefaultSettings() {
Entity defaultSettingsEntity = new DynamicEntity(this);
for (Attribute attr : this.getAtomicAttributes()) {
// default values are stored/retrieved as strings, so we convert them to the required type
// here.
String defaultValue = attr.getDefaultValue();
if (defaultValue != null) {
Object typedDefaultValue = getTypedValue(defaultValue, attr, entityManager);
defaultSettingsEntity.set(attr.getName(), typedDefaultValue);
}
}
return defaultSettingsEntity;
}
@BeforeMethod
public void setUp() {
fileStoreDownloadMock = mock(FileStoreDownload.class);
fileRepositoryCollectionFactoryMock = mock(FileRepositoryCollectionFactory.class);
fileRepositoryCollectionMock = mock(FileRepositoryCollection.class);
importServiceFactoryMock = mock(ImportServiceFactory.class);
importServiceMock = mock(ImportService.class);
dataService = mock(DataService.class);
progress = mock(Progress.class);
fileIngester =
new FileIngester(
fileStoreDownloadMock,
importServiceFactoryMock,
fileRepositoryCollectionFactoryMock,
dataService);
entityMetaData = new MapEntity(EntityMetaDataMetaData.FULL_NAME, entityName);
fileIngest = new MapEntity();
fileIngest.set(FileIngestMetaData.ENTITY_META_DATA, entityMetaData);
fileIngest.set(FileIngestMetaData.URL, url);
fileIngest.set(FileIngestMetaData.LOADER, "CSV");
}
@Test
public void testReaderFiltersRows() throws IOException {
Mockito.when(tabixReader.query("13:12-12")).thenReturn(iterator);
Mockito.when(iterator.next())
.thenReturn(
"id1\t13\t11\tnope", "id2\t13\t12\tyup", "id3\t13\t12\tyup", "id3\t13\t13\tnope", null);
Iterable<Entity> actual =
tabixRepository.findAll(tabixRepository.query().eq(CHROM, "13").and().eq(POS, 12));
Entity e1 = new MapEntity(entityMetaData);
e1.set("ID", "id2");
e1.set("#CHROM", "13");
e1.set("POS", 12l);
e1.set("Description", "yup");
Entity e2 = new MapEntity(entityMetaData);
e2.set("ID", "id3");
e2.set("#CHROM", "13");
e2.set("POS", 12l);
e2.set("Description", "yup");
assertEquals(Lists.newArrayList(actual), Arrays.asList(e1, e2));
}
/**
* Uses the map containing the parsed OMIM map to create a list of {@link Entity}
*
* @param omimEntriesByGeneSymbol
* @param geneSymbol
*/
private void addEntityToGeneEntityList(
Map<String, List<List<String>>> omimEntriesByGeneSymbol, String geneSymbol) {
Entity entity = new MapEntity(getEntityMetaData());
entity.set(OMIM_GENE_SYMBOLS_COL_NAME, geneSymbol);
entity.set(OMIM_PHENOTYPE_COL_NAME, join(omimEntriesByGeneSymbol.get(geneSymbol).get(0), ","));
entity.set(OMIM_MIM_NUMBER_COL_NAME, join(omimEntriesByGeneSymbol.get(geneSymbol).get(1), ","));
entity.set(
OMIM_CYTO_LOCATION_COL_NAME, join(omimEntriesByGeneSymbol.get(geneSymbol).get(2), ","));
entity.set(OMIM_TYPE_COL_NAME, join(omimEntriesByGeneSymbol.get(geneSymbol).get(3), ","));
entity.set(OMIM_ENTRY_COL_NAME, join(omimEntriesByGeneSymbol.get(geneSymbol).get(4), ","));
List<Entity> entities = entitiesByGeneSymbol.get(geneSymbol);
if (entities == null) {
entities = new ArrayList<>();
entitiesByGeneSymbol.put(geneSymbol, entities);
}
entities.add(entity);
}
@Override
public void set(String attributeName, Object value) {
decoratedEntity.set(attributeName, value);
}
@Test
public void resolveSelfReferences() {
DefaultEntityMetaData emd = new DefaultEntityMetaData("Person");
emd.addAttribute("name").setIdAttribute(true).setNillable(false);
emd.addAttribute("father")
.setDataType(MolgenisFieldTypes.XREF)
.setNillable(true)
.setRefEntity(emd);
emd.addAttribute("mother")
.setDataType(MolgenisFieldTypes.XREF)
.setNillable(true)
.setRefEntity(emd);
Entity piet = new MapEntity("name");
piet.set("name", "Piet");
Entity klaas = new MapEntity("name");
klaas.set("name", "Klaas");
klaas.set("father", "Piet");
klaas.set("mother", "Katrijn");
Entity jan = new MapEntity("name");
jan.set("name", "Jan");
jan.set("father", "Piet");
jan.set("mother", "Marie");
Entity katrijn = new MapEntity("name");
katrijn.set("name", "Katrijn");
katrijn.set("father", "Jan");
katrijn.set("mother", "Marie");
Entity marie = new MapEntity("name");
marie.set("name", "Marie");
Repository repo = mock(Repository.class);
when(repo.getName()).thenReturn("Person");
when(repo.findOne("Piet")).thenReturn(piet);
when(repo.findOne("Jan")).thenReturn(jan);
when(repo.findOne("Marie")).thenReturn(marie);
when(repo.findOne("Katrijn")).thenReturn(katrijn);
DataServiceImpl ds = new DataServiceImpl();
ds.addRepository(repo);
Iterable<Entity> entities =
Arrays.<Entity>asList(
new DefaultEntity(emd, ds, piet),
new DefaultEntity(emd, ds, klaas),
new DefaultEntity(emd, ds, jan),
new DefaultEntity(emd, ds, katrijn),
new DefaultEntity(emd, ds, marie));
Iterable<Entity> sorted = new DependencyResolver().resolveSelfReferences(entities, emd);
List<Entity> sortedList = Lists.newArrayList(sorted);
assertEquals(sortedList.size(), 5);
assertEquals(sortedList.get(0).getIdValue(), "Marie");
assertEquals(sortedList.get(1).getIdValue(), "Piet");
assertEquals(sortedList.get(2).getIdValue(), "Jan");
assertEquals(sortedList.get(3).getIdValue(), "Katrijn");
assertEquals(sortedList.get(4).getIdValue(), "Klaas");
}
@Override
public void updateTestEntity(Entity entity) throws Exception {
entity.set("col2", sdf.parse("2013-02-09 13:00:00"));
}
@Override
public void set(Entity values) {
decoratedEntity.set(values);
}
@RequestMapping(
value = "/verify",
method = RequestMethod.POST,
headers = "Content-Type=multipart/form-data")
public void verify(
@RequestParam(value = "selectedDataSet", required = false) String selectedDataSetId,
@RequestParam Part file,
HttpServletResponse response,
Model model)
throws IOException {
EntitySource reader = null;
ExcelWriter<Entity> excelWriterRanks = null;
try {
if (selectedDataSetId != null) {
String origFileName = FileUploadUtils.getOriginalFileName(file);
File uploadFile = fileStore.store(file.getInputStream(), origFileName);
response.setContentType("application/vnd.ms-excel");
response.addHeader(
"Content-Disposition",
"attachment; filename=" + getCsvFileName(file.getName() + "-ranks"));
excelWriterRanks = new ExcelWriter<Entity>(response.getOutputStream());
excelWriterRanks.addCellProcessor(new LowerCaseProcessor(true, false));
Writable<Entity> sheetWriterRank = null;
Writable<Entity> sheetWriterRankStatistics = null;
Writable<Entity> sheetWriteBiobankRanks = null;
Writable<Entity> sheetWriteSpssInput = null;
reader = new ExcelEntitySourceFactory().create(uploadFile);
Repository<? extends Entity> inputSheet = reader.getRepositoryByEntityName("Sheet1");
List<String> biobankNames = new ArrayList<String>();
for (AttributeMetaData attr : inputSheet.getAttributes()) {
biobankNames.add(attr.getName());
}
String firstColumn = biobankNames.get(0);
biobankNames.remove(0);
// First column has to correspond to the selected dataset
DataSet ds = dataService.findOne(DataSet.ENTITY_NAME, Integer.parseInt(selectedDataSetId));
if (ds.getName().equalsIgnoreCase(firstColumn)) {
Map<String, Map<String, List<String>>> maunalMappings =
new HashMap<String, Map<String, List<String>>>();
for (Entity row : inputSheet) {
String variableName = row.getString(firstColumn);
if (!maunalMappings.containsKey(variableName))
maunalMappings.put(variableName, new HashMap<String, List<String>>());
for (String biobank : biobankNames) {
if (row.get(biobank) != null) {
String mappingString = row.get(biobank).toString();
if (!maunalMappings.containsKey(variableName)) {
maunalMappings.put(variableName, new HashMap<String, List<String>>());
}
if (!maunalMappings.get(variableName).containsKey(biobank.toLowerCase())) {
maunalMappings
.get(variableName)
.put(biobank.toLowerCase(), new ArrayList<String>());
}
maunalMappings
.get(variableName)
.get(biobank.toLowerCase())
.addAll(Arrays.asList(mappingString.split(",")));
}
}
}
List<String> lowerCaseBiobankNames = new ArrayList<String>();
for (String element : biobankNames) {
lowerCaseBiobankNames.add(element.toLowerCase());
}
List<DataSet> dataSets =
dataService.findAllAsList(
DataSet.ENTITY_NAME, new QueryImpl().in(DataSet.NAME, lowerCaseBiobankNames));
lowerCaseBiobankNames.add(0, firstColumn.toLowerCase());
sheetWriterRank = excelWriterRanks.createWritable("result", lowerCaseBiobankNames);
Map<String, Map<String, List<Integer>>> rankCollection =
new HashMap<String, Map<String, List<Integer>>>();
List<Object> allRanks = new ArrayList<Object>();
for (Entry<String, Map<String, List<String>>> entry : maunalMappings.entrySet()) {
String variableName = entry.getKey();
List<String> ranks = new ArrayList<String>();
ranks.add(variableName);
Map<String, List<String>> mappingDetail = entry.getValue();
List<ObservableFeature> features =
dataService.findAllAsList(
ObservableFeature.ENTITY_NAME,
new QueryImpl().eq(ObservableFeature.NAME, variableName));
String description = features.get(0).getDescription();
if (!rankCollection.containsKey(description))
rankCollection.put(description, new HashMap<String, List<Integer>>());
if (!features.isEmpty()) {
Entity row = new MapEntity();
row.set(firstColumn.toLowerCase(), description);
for (DataSet dataSet : dataSets) {
List<Integer> ranksBiobank = new ArrayList<Integer>();
if (mappingDetail.containsKey(dataSet.getName().toLowerCase())) {
Map<String, Hit> mappedFeatureIds =
findFeaturesFromIndex(
"name",
mappingDetail.get(dataSet.getName().toLowerCase()),
dataSet.getId());
String mappingDataSetIdentifier =
SecurityUtils.getCurrentUsername()
+ "-"
+ selectedDataSetId
+ "-"
+ dataSet.getId();
Query q =
new QueryImpl()
.eq("store_mapping_feature", features.get(0).getId())
.pageSize(50)
.sort(new Sort(Direction.DESC, "store_mapping_score"));
SearchRequest searchRequest =
new SearchRequest(mappingDataSetIdentifier, q, null);
SearchResult result = searchService.search(searchRequest);
if (mappedFeatureIds.size() == 0) {
row.set(dataSet.getName().toLowerCase(), "N/A2");
continue;
}
List<String> ids = new ArrayList<String>();
for (Hit hit : result.getSearchHits()) {
Map<String, Object> columnValueMap = hit.getColumnValueMap();
ids.add(columnValueMap.get("store_mapping_mapped_feature").toString());
}
Map<String, Hit> featureInfos = findFeaturesFromIndex("id", ids, dataSet.getId());
String previousDescription = null;
int rank = 0;
for (Hit hit : result.getSearchHits()) {
Map<String, Object> columnValueMap = hit.getColumnValueMap();
String mappedFeatureId =
columnValueMap.get("store_mapping_mapped_feature").toString();
String mappedFeatureDescription =
featureInfos
.get(mappedFeatureId)
.getColumnValueMap()
.get("description")
.toString()
.replaceAll("[^0-9a-zA-Z ]", " ");
rank++;
if (previousDescription != null
&& previousDescription.equalsIgnoreCase(mappedFeatureDescription)) rank--;
if (mappedFeatureIds.containsKey(mappedFeatureId)) {
ranksBiobank.add(rank);
allRanks.add(rank);
mappedFeatureIds.remove(mappedFeatureId);
}
previousDescription = mappedFeatureDescription;
}
if (mappedFeatureIds.size() == 0) {
String output = StringUtils.join(ranksBiobank, ',');
if (ranksBiobank.size() > 1) {
output += " (" + averageRank(ranksBiobank) + ")";
}
row.set(dataSet.getName().toLowerCase(), output);
} else {
for (int i = 0; i < mappedFeatureIds.size(); i++) allRanks.add("Not mapped");
row.set(dataSet.getName().toLowerCase(), "Not mapped");
ranksBiobank.clear();
}
} else row.set(dataSet.getName().toLowerCase(), "N/A1");
rankCollection.get(description).put(dataSet.getName().toLowerCase(), ranksBiobank);
}
sheetWriterRank.add(row);
}
}
Map<String, List<Integer>> rankCollectionPerBiobank =
new HashMap<String, List<Integer>>();
{
sheetWriterRankStatistics =
excelWriterRanks.createWritable(
"rank statistics",
Arrays.asList(
firstColumn.toLowerCase(),
"average rank",
"round-up rank",
"median rank",
"minium",
"maximum"));
for (Entry<String, Map<String, List<Integer>>> entry : rankCollection.entrySet()) {
String variableName = entry.getKey();
Entity row = new MapEntity();
row.set(firstColumn.toLowerCase(), variableName);
List<Integer> rankAllBiobanks = new ArrayList<Integer>();
for (Entry<String, List<Integer>> rankBiobanks : entry.getValue().entrySet()) {
if (!rankCollectionPerBiobank.containsKey(rankBiobanks.getKey()))
rankCollectionPerBiobank.put(rankBiobanks.getKey(), new ArrayList<Integer>());
rankCollectionPerBiobank.get(rankBiobanks.getKey()).addAll(rankBiobanks.getValue());
rankAllBiobanks.addAll(rankBiobanks.getValue());
}
row.set("average rank", averageRank(rankAllBiobanks));
row.set("round-up rank", Math.ceil(averageRank(rankAllBiobanks)));
Collections.sort(rankAllBiobanks);
if (!rankAllBiobanks.isEmpty()) {
row.set("minium", rankAllBiobanks.get(0));
row.set("maximum", rankAllBiobanks.get(rankAllBiobanks.size() - 1));
double medianRank = 0;
if (rankAllBiobanks.size() % 2 == 0) {
medianRank =
(double)
(rankAllBiobanks.get(rankAllBiobanks.size() / 2 - 1)
+ rankAllBiobanks.get(rankAllBiobanks.size() / 2))
/ 2;
} else {
medianRank = rankAllBiobanks.get(rankAllBiobanks.size() / 2);
}
row.set("median rank", medianRank);
}
sheetWriterRankStatistics.add(row);
}
}
{
lowerCaseBiobankNames.remove(0);
sheetWriteBiobankRanks =
excelWriterRanks.createWritable("biobank average ranks", lowerCaseBiobankNames);
Entity entity = new MapEntity();
for (Entry<String, List<Integer>> entry : rankCollectionPerBiobank.entrySet()) {
entity.set(entry.getKey(), averageRank(entry.getValue()));
}
sheetWriteBiobankRanks.add(entity);
}
{
sheetWriteSpssInput =
excelWriterRanks.createWritable("spss ranks", Arrays.asList("rank"));
for (Object rank : allRanks) {
Entity entity = new MapEntity("rank", rank);
sheetWriteSpssInput.add(entity);
}
}
}
}
} finally {
if (reader != null) reader.close();
if (excelWriterRanks != null) IOUtils.closeQuietly(excelWriterRanks);
}
}
@Override
public void updateTestEntity(Entity entity) throws Exception {
entity.set("col1", "ONE");
}
@Override
public void populateTestEntity(Entity entity) throws Exception {
entity.set("identifier", "ONE");
entity.set("col1", "TWO");
}