@Test
public void testCopyToDirectory() throws Exception {
this.setup.groupBySetup();
String uriTemplate = Paths.get(folder.getRoot().toURI()).toUri().toString();
SQLResponse response = execute("copy characters to DIRECTORY ?", new Object[] {uriTemplate});
assertThat(response.rowCount(), is(7L));
List<String> lines = new ArrayList<>(7);
DirectoryStream<Path> stream =
Files.newDirectoryStream(Paths.get(folder.getRoot().toURI()), "*.json");
for (Path entry : stream) {
lines.addAll(Files.readAllLines(entry, StandardCharsets.UTF_8));
}
String[] list = folder.getRoot().list();
assertThat(list.length, greaterThanOrEqualTo(1));
for (String file : list) {
assertThat(file, startsWith("characters_"));
}
assertThat(lines.size(), is(7));
for (String line : lines) {
assertThat(line, startsWith("{"));
assertThat(line, endsWith("}"));
}
}
/** Fake installation on Unix. */
@Test
public void fakeUnixInstall() throws Exception {
Assume.assumeFalse("If we're on Windows, don't bother doing this", Functions.isWindows());
File bundle = File.createTempFile("fake-jdk-by-hudson", "sh");
try {
new FilePath(bundle)
.write(
"#!/bin/bash -ex\n"
+ "mkdir -p jdk1.6.0_dummy/bin\n"
+ "touch jdk1.6.0_dummy/bin/java",
"ASCII");
TaskListener l = StreamTaskListener.fromStdout();
new JDKInstaller("", true)
.install(
new LocalLauncher(l),
Platform.LINUX,
new JDKInstaller.FilePathFileSystem(j.jenkins),
l,
tmp.getRoot().getPath(),
bundle.getPath());
assertTrue(new File(tmp.getRoot(), "bin/java").exists());
} finally {
bundle.delete();
}
}
@Test
public void testOutputFailed() throws IOException {
ProjectFilesystem projectFilesystem = new ProjectFilesystem(tmpDir.getRoot().toPath());
ChromeTraceBuildListener listener =
new ChromeTraceBuildListener(
projectFilesystem,
new FakeClock(1409702151000000000L),
new ObjectMapper(),
Locale.US,
TimeZone.getTimeZone("America/Los_Angeles"),
/* tracesToKeep */ 3,
false);
try {
assumeTrue("Can make the root directory read-only", tmpDir.getRoot().setReadOnly());
listener.outputTrace(new BuildId("BUILD_ID"));
fail("Expected an exception.");
} catch (HumanReadableException e) {
assertEquals(
"Unable to write trace file: java.nio.file.AccessDeniedException: "
+ projectFilesystem.resolve(BuckConstant.BUCK_OUTPUT_PATH),
e.getMessage());
} finally {
tmpDir.getRoot().setWritable(true);
}
}
@Ignore(
"Test is ignored because currently it is not possible to register two block extensions in same instance. This may require deep changes on Asciidoctor Extensions API")
@Test
public void extensions_should_be_correctly_added() throws IOException {
Asciidoctor asciidoctor = JRubyAsciidoctor.create();
// To avoid registering the same extension over and over for all tests, service is instantiated
// manually.
new ArrowsAndBoxesExtension().register(asciidoctor);
Options options =
options()
.inPlace(false)
.toFile(new File(testFolder.getRoot(), "rendersample.html"))
.safe(SafeMode.UNSAFE)
.get();
asciidoctor.renderFile(classpath.getResource("arrows-and-boxes-example.ad"), options);
File renderedFile = new File(testFolder.getRoot(), "rendersample.html");
Document doc = Jsoup.parse(renderedFile, "UTF-8");
Element arrowsJs =
doc.select("script[src=http://www.headjump.de/javascripts/arrowsandboxes.js").first();
assertThat(arrowsJs, is(notNullValue()));
Element arrowsCss =
doc.select("link[href=http://www.headjump.de/stylesheets/arrowsandboxes.css").first();
assertThat(arrowsCss, is(notNullValue()));
Element arrowsAndBoxes = doc.select("pre[class=arrows-and-boxes").first();
assertThat(arrowsAndBoxes, is(notNullValue()));
}
/** End-to-end installation test. */
private void doTestAutoInstallation(String id, String fullversion) throws Exception {
Assume.assumeTrue(
"this is a really time consuming test, so only run it when we really want",
Boolean.getBoolean("jenkins.testJDKInstaller"));
retrieveUpdateCenterData();
JDKInstaller installer = new JDKInstaller(id, true);
JDK jdk =
new JDK(
"test",
tmp.getRoot().getAbsolutePath(),
Arrays.asList(new InstallSourceProperty(Arrays.<ToolInstaller>asList(installer))));
j.jenkins.getJDKs().add(jdk);
FreeStyleProject p = j.createFreeStyleProject();
p.setJDK(jdk);
p.getBuildersList().add(new Shell("java -fullversion\necho $JAVA_HOME"));
FreeStyleBuild b = j.buildAndAssertSuccess(p);
@SuppressWarnings("deprecation")
String log = b.getLog();
System.out.println(log);
// make sure it runs with the JDK that just got installed
assertTrue(log.contains(fullversion));
assertTrue(log.contains(tmp.getRoot().getAbsolutePath()));
}
/**
* Setup to do for each unit test.
*
* @throws IOException if there's an error accessing the local file system
*/
@Before
public void setUp() throws IOException {
srcMetastore = new MockHiveMetastoreClient();
destMetastore = new MockHiveMetastoreClient();
srcLocalTmp.create();
destLocalTmp.create();
final Path srcFsRoot = new Path("file://" + srcLocalTmp.getRoot().getAbsolutePath());
final Path destFsRoot = new Path("file://" + destLocalTmp.getRoot().getAbsolutePath());
srcWarehouseRoot = new Path(makeFileUri(srcLocalTmp), "warehouse");
destWarehouseRoot = new Path(makeFileUri(destLocalTmp), "warehouse");
srcWarehouseRoot.getFileSystem(conf).mkdirs(srcWarehouseRoot);
destWarehouseRoot.getFileSystem(conf).mkdirs(destWarehouseRoot);
LOG.info(String.format("src root: %s, dest root: %s", srcWarehouseRoot, destWarehouseRoot));
final Path srcTmp = new Path(makeFileUri(this.srcLocalTmp), "tmp");
final Path destTmp = new Path(makeFileUri(this.destLocalTmp), "tmp");
srcCluster = new MockCluster("src_cluster", srcMetastore, srcFsRoot, srcTmp);
destCluster = new MockCluster("dest_cluster", destMetastore, destFsRoot, destTmp);
// Disable checking of modified times as the local filesystem does not
// support this
directoryCopier = new DirectoryCopier(conf, destCluster.getTmpDir(), false);
}
@Test
public void tryLock() {
assertThat(temp.getRoot().list()).isEmpty();
lock.tryLock();
assertThat(temp.getRoot().toPath().resolve(".sonar_lock")).exists();
lock.unlock();
}
@Test
public void testCopyColumnsToDirectory() throws Exception {
this.setup.groupBySetup();
String uriTemplate = Paths.get(folder.getRoot().toURI()).toUri().toString();
SQLResponse response =
execute(
"copy characters (name, details['job']) to DIRECTORY ?", new Object[] {uriTemplate});
assertThat(response.cols().length, is(0));
assertThat(response.rowCount(), is(7L));
List<String> lines = new ArrayList<>(7);
DirectoryStream<Path> stream =
Files.newDirectoryStream(Paths.get(folder.getRoot().toURI()), "*.json");
for (Path entry : stream) {
lines.addAll(Files.readAllLines(entry, StandardCharsets.UTF_8));
}
Path path = Paths.get(folder.getRoot().toURI().resolve("characters_0_.json"));
assertTrue(path.toFile().exists());
assertThat(lines.size(), is(7));
boolean foundJob = false;
boolean foundName = false;
for (String line : lines) {
foundName = foundName || line.contains("Arthur Dent");
foundJob = foundJob || line.contains("Sandwitch Maker");
assertThat(line.split(",").length, is(2));
assertThat(line.trim(), startsWith("["));
assertThat(line.trim(), endsWith("]"));
}
assertTrue(foundJob);
assertTrue(foundName);
}
private Resource createFile(String path, String content) throws IOException {
final File file = new File(folder.getRoot(), path);
file.getParentFile().mkdirs();
final Writer writer = new OutputStreamWriter(new FileOutputStream(file), "UTF-8");
writer.write(content);
writer.close();
return new FileResource(folder.getRoot(), path);
}
@Before
public void setUpProject() throws IOException {
orchestrator.resetData();
orchestrator
.getServer()
.restoreProfile(FileLocation.ofClasspath("/duplication/xoo-duplication-profile.xml"));
FileUtils.copyDirectory(ItUtils.projectDir(PROJECT_DIR), temp.getRoot());
projectDir = temp.getRoot();
}
@Test
public void testDirectoryOrdering() throws IOException {
createFile("src1/org/jacoco/example/Test.java", "AAA");
locator.add(new FileResource(folder.getRoot(), "src1"));
createFile("src2/org/jacoco/example/Test.java", "BBB");
locator.add(new FileResource(folder.getRoot(), "src2"));
createFile("src3/org/jacoco/example/Test.java", "CCC");
locator.add(new FileResource(folder.getRoot(), "src3"));
final Reader source = locator.getSourceFile("org/jacoco/example", "Test.java");
assertContent("AAA", source);
}
@Test
public void testExportToDirectory() throws Exception {
closeFileHandlesInEtc();
resetInitialState();
String response = console.runCommand(EXPORT_COMMAND + " \"" + temporaryFolder.getRoot() + "\"");
assertThat(
String.format("Exporting current configurations to %s.", temporaryFolder.toString()),
response,
containsString("Successfully exported all configurations."));
assertExportContents(temporaryFolder.getRoot().toPath());
}
@Test
public void differentContexts() throws Exception {
ContextManager cm =
new ContextManager(
vfs,
new ReloadingClassLoader() {
@Override
public ClassLoader getClassLoader() {
return ClassLoader.getSystemClassLoader();
}
});
cm.setContextConfig(
new ContextsConfig() {
@Override
public ContextConfig getContextConfig(String context) {
if (context.equals("CX1")) {
return new ContextConfig(uri1.toString(), true);
} else if (context.equals("CX2")) {
return new ContextConfig(uri2.toString(), true);
}
return null;
}
});
FileObject testDir = vfs.resolveFile(folder1.getRoot().toURI().toString());
FileObject[] dirContents = testDir.getChildren();
ClassLoader cl1 = cm.getClassLoader("CX1");
FileObject[] files = ((VFSClassLoader) cl1).getFileObjects();
Assert.assertArrayEquals(createFileSystems(dirContents), files);
FileObject testDir2 = vfs.resolveFile(folder2.getRoot().toURI().toString());
FileObject[] dirContents2 = testDir2.getChildren();
ClassLoader cl2 = cm.getClassLoader("CX2");
FileObject[] files2 = ((VFSClassLoader) cl2).getFileObjects();
Assert.assertArrayEquals(createFileSystems(dirContents2), files2);
Class<?> defaultContextClass = cl1.loadClass("test.HelloWorld");
Object o1 = defaultContextClass.newInstance();
Assert.assertEquals("Hello World!", o1.toString());
Class<?> myContextClass = cl2.loadClass("test.HelloWorld");
Object o2 = myContextClass.newInstance();
Assert.assertEquals("Hello World!", o2.toString());
Assert.assertFalse(defaultContextClass.equals(myContextClass));
cm.removeUnusedContexts(new HashSet<String>());
}
@Test
public void whenDatabaseTuningFilePresentInDefaultLocationShouldLoadItEvenIfNotSpecified()
throws IOException {
File emptyPropertyFile = PropertyFileBuilder.builder(folder.getRoot()).build();
DatabaseTuningPropertyFileBuilder.builder(folder.getRoot()).build();
PropertyFileConfigurator configurator = new PropertyFileConfigurator(emptyPropertyFile);
assertEquals(
"25M",
configurator
.getDatabaseTuningProperties()
.get(GraphDatabaseSettings.nodestore_mapped_memory_size.name()));
}
/**
* Initializes the test.
*
* @throws Exception if some errors were occurred
*/
@Before
public void setUp() throws Exception {
conf = new Configuration(true);
if (format instanceof Configurable) {
((Configurable) format).setConf(conf);
}
mapping = new File(temp.getRoot(), "mapping").getCanonicalFile();
temporary = new File(temp.getRoot(), "temporary").getCanonicalFile();
localtemp = new File(temp.getRoot(), "localtemp").getCanonicalFile();
profile =
new HadoopDataSourceProfile(
conf, "testing", "testing", new Path(mapping.toURI()), new Path(temporary.toURI()));
context = new OutputAttemptContext("tx", "atmpt", profile.getId(), new Counter());
}
@Test
public void testFirstCopy() throws IOException {
createTempFiles();
KenwoodUsb kenwoodUsb = new KenwoodUsb(tempSourceFolder.getRoot(), tempTargetFolder.getRoot());
kenwoodUsb.copy();
assertEquals(
"Wrong number of sub-directories in the target directory",
4,
tempTargetFolder.getRoot().list().length);
assertEquals(
"Wrong number of files in the target directory",
MUSIC_FILE_NUMBER,
FileUtils.listFiles(tempTargetFolder.getRoot(), null, true).size());
}
@Test
public void canCompressTraces() throws IOException {
ProjectFilesystem projectFilesystem = new ProjectFilesystem(tmpDir.getRoot().toPath());
ChromeTraceBuildListener listener =
new ChromeTraceBuildListener(
projectFilesystem,
new FakeClock(1409702151000000000L),
new ObjectMapper(),
Locale.US,
TimeZone.getTimeZone("America/Los_Angeles"),
/* tracesToKeep */ 1,
true);
listener.outputTrace(new BuildId("BUILD_ID"));
Path tracePath = Paths.get("buck-out/log/traces/build.2014-09-02.16-55-51.BUILD_ID.trace.gz");
assertTrue(projectFilesystem.exists(tracePath));
BufferedReader reader =
new BufferedReader(
new InputStreamReader(
new GZIPInputStream(projectFilesystem.newFileInputStream(tracePath))));
List<?> elements = new Gson().fromJson(reader, List.class);
assertThat(elements, notNullValue());
}
@Test
public void sanitizeSymlinkedWorkingDirectory() throws IOException {
TemporaryFolder folder = new TemporaryFolder();
folder.create();
// Setup up a symlink to our working directory.
Path symlinkedRoot = folder.getRoot().toPath().resolve("symlinked-root");
java.nio.file.Files.createSymbolicLink(symlinkedRoot, tmp.getRootPath());
// Run the build, setting PWD to the above symlink. Typically, this causes compilers to use
// the symlinked directory, even though it's not the right project root.
Map<String, String> envCopy = Maps.newHashMap(System.getenv());
envCopy.put("PWD", symlinkedRoot.toString());
workspace
.runBuckCommandWithEnvironmentAndContext(
tmp.getRootPath(),
Optional.<NGContext>absent(),
Optional.<BuckEventListener>absent(),
Optional.of(ImmutableMap.copyOf(envCopy)),
"build",
"//:simple#default,static")
.assertSuccess();
// Verify that we still sanitized this path correctly.
Path lib = workspace.getPath("buck-out/gen/simple#default,static/libsimple.a");
String contents = Files.asByteSource(lib.toFile()).asCharSource(Charsets.ISO_8859_1).read();
assertFalse(lib.toString(), contents.contains(tmp.getRootPath().toString()));
assertFalse(lib.toString(), contents.contains(symlinkedRoot.toString()));
folder.delete();
}
@Test
public void testCorrectSettingOfMaxSlots() throws Exception {
File confFile = tmp.newFile("flink-conf.yaml");
File jarFile = tmp.newFile("test.jar");
new CliFrontend(tmp.getRoot().getAbsolutePath());
String[] params = new String[] {"-yn", "2", "-ys", "3", jarFile.getAbsolutePath()};
RunOptions runOptions = CliFrontendParser.parseRunCommand(params);
FlinkYarnSessionCli yarnCLI = new TestCLI("y", "yarn");
AbstractYarnClusterDescriptor descriptor =
yarnCLI.createDescriptor("", runOptions.getCommandLine());
// each task manager has 3 slots but the parallelism is 7. Thus the slots should be increased.
Assert.assertEquals(3, descriptor.getTaskManagerSlots());
Assert.assertEquals(2, descriptor.getTaskManagerCount());
Configuration config = new Configuration();
CliFrontend.setJobManagerAddressInConfig(config, new InetSocketAddress("test", 9000));
ClusterClient client = new TestingYarnClusterClient(descriptor, config);
Assert.assertEquals(6, client.getMaxSlots());
}
@Test
public void testAnalyzeAll4() throws IOException {
createClassfile("bin1", AnalyzerTest.class);
final int count = analyzer.analyzeAll(folder.getRoot());
assertEquals(1, count);
assertEquals(Collections.singleton("org/jacoco/core/analysis/AnalyzerTest"), classes);
}
@Test
public void testClose_cannotDelete() throws Exception {
File file =
new File(tempFolder.getRoot(), "testClose_cannotDelete") {
int deleteCalls = 0;
@Override
public boolean delete() {
if (deleteCalls == 0) {
deleteCalls++;
return false;
} else {
return super.delete();
}
}
};
assertTrue(file.createNewFile());
assertTrue(file.exists());
PurgeOnCloseFileInputStream purgeOnCloseFileInputStream = new PurgeOnCloseFileInputStream(file);
purgeOnCloseFileInputStream.close();
assertTrue(file.exists());
assertTrue(file.setReadable(true));
assertTrue(file.setWritable(true));
assertTrue(file.delete());
}
@Test
public void testGenerateUniqueOperationIds() {
final File output = folder.getRoot();
final Swagger swagger =
new SwaggerParser().read("src/test/resources/2_0/duplicateOperationIds.yaml");
CodegenConfig codegenConfig = new JavaClientCodegen();
codegenConfig.setOutputDir(output.getAbsolutePath());
ClientOptInput clientOptInput =
new ClientOptInput().opts(new ClientOpts()).swagger(swagger).config(codegenConfig);
DefaultGenerator generator = new DefaultGenerator();
generator.opts(clientOptInput);
Map<String, List<CodegenOperation>> paths = generator.processPaths(swagger.getPaths());
Set<String> opIds = new HashSet<String>();
for (String path : paths.keySet()) {
List<CodegenOperation> ops = paths.get(path);
for (CodegenOperation op : ops) {
assertFalse(opIds.contains(op.operationId));
opIds.add(op.operationId);
}
}
}
@Test
public void testExpiration() throws Exception {
// negative time to make sure it is expired on the second call
cache = new PersistentCache(tmp.getRoot().toPath(), -100, mock(Logger.class));
assertCacheHit(false);
assertCacheHit(false);
}
@Test
public void testReconfigure() throws Exception {
cache = new PersistentCache(tmp.getRoot().toPath(), Long.MAX_VALUE, mock(Logger.class));
assertCacheHit(false);
assertCacheHit(true);
File root = tmp.getRoot();
FileUtils.deleteQuietly(root);
// should re-create cache directory and start using the cache
cache.reconfigure();
assertThat(root).exists();
assertCacheHit(false);
assertCacheHit(true);
}
@AfterClass
public static void teardown() throws Exception {
// Unset FLINK_CONF_DIR, as it might change the behavior of other tests
Map<String, String> map = new HashMap<>(System.getenv());
map.remove(CliFrontend.ENV_CONFIG_DIRECTORY);
TestBaseUtils.setEnv(map);
// When we are on travis, we copy the tmp files of JUnit (containing the MiniYARNCluster log
// files)
// to <flinkRoot>/target/flink-yarn-tests-*.
// The files from there are picked up by the ./tools/travis_watchdog.sh script
// to upload them to Amazon S3.
if (isOnTravis()) {
File target = new File("../target" + yarnConfiguration.get(TEST_CLUSTER_NAME_KEY));
if (!target.mkdirs()) {
LOG.warn("Error creating dirs to {}", target);
}
File src = tmp.getRoot();
LOG.info(
"copying the final files from {} to {}", src.getAbsolutePath(), target.getAbsolutePath());
try {
FileUtils.copyDirectoryToDirectory(src, target);
} catch (IOException e) {
LOG.warn(
"Error copying the final files from {} to {}: msg: {}",
src.getAbsolutePath(),
target.getAbsolutePath(),
e.getMessage(),
e);
}
}
}
@Before
public void setup() {
String pwdFull = new File(".").getAbsolutePath();
this.pwd = pwdFull.substring(0, pwdFull.length() - 2);
this.testDir = temp.getRoot().getAbsolutePath();
correctCommand =
"cegma --genome "
+ pwd
+ "/assembly.fa --output "
+ testDir
+ "/cegma-output --threads 16 2>&1";
correctFullCommand =
"cd "
+ testDir
+ "; CEGMATMP="
+ testDir
+ "/temp; "
+ "sed 's/>/>seq_/g' "
+ pwd
+ "/assembly.fa > "
+ testDir
+ "/assembly.fa.mod.fa; "
+ "cegma --genome "
+ testDir
+ "/assembly.fa.mod.fa --output "
+ testDir
+ "/cegma-output --threads 16 2>&1"
+ "; cd "
+ pwd;
}
@Before
public void setUp() throws Exception {
assumeThat(TD_API_KEY, not(isEmptyOrNullString()));
projectDir = folder.getRoot().toPath().toAbsolutePath().normalize();
config = folder.newFile().toPath();
Files.write(config, asList("secrets.td.apikey = " + TD_API_KEY));
outfile = projectDir.resolve("outfile");
client = TDClient.newBuilder(false).setApiKey(TD_API_KEY).build();
database = "tmp_" + UUID.randomUUID().toString().replace('-', '_');
client.createDatabase(database);
table = "test";
String insertJobId =
client.submit(
TDJobRequest.newPrestoQuery(database, "create table " + table + " as select 1"));
TestUtils.expect(Duration.ofMinutes(5), jobSuccess(client, insertJobId));
String selectCountJobId =
client.submit(TDJobRequest.newPrestoQuery(database, "select count(*) from " + table));
TestUtils.expect(Duration.ofMinutes(5), jobSuccess(client, selectCountJobId));
List<ArrayNode> result = downloadResult(selectCountJobId);
assertThat(result.get(0).get(0).asInt(), is(1));
}
@Before
public void setup() throws Exception {
vfs = getVFS();
folder1.create();
folder2.create();
FileUtils.copyURLToFile(
this.getClass().getResource("/HelloWorld.jar"), folder1.newFile("HelloWorld.jar"));
FileUtils.copyURLToFile(
this.getClass().getResource("/HelloWorld.jar"), folder2.newFile("HelloWorld.jar"));
uri1 = new File(folder1.getRoot(), "HelloWorld.jar").toURI();
uri2 = folder2.getRoot().toURI();
}
@Test
public void testCreateFileWithDirectories() throws IOException {
final IMultiReportOutput output = new FileMultiReportOutput(folder.getRoot());
final OutputStream stream = output.createFile("a/b/c/test");
stream.write(1);
stream.write(2);
stream.write(3);
stream.close();
output.close();
final InputStream actual = new FileInputStream(new File(folder.getRoot(), "a/b/c/test"));
assertEquals(1, actual.read());
assertEquals(2, actual.read());
assertEquals(3, actual.read());
assertEquals(-1, actual.read());
}
@Test
public void testWithoutDecode() throws IOException {
File testFile = new File(folder.getRoot(), "testFileNoDecode.txt");
FileUtils.writeStringToFile(testFile, FILEDATA);
List<Text> output = ShellUtil.scanFile(testFile.getAbsolutePath(), false);
assertEquals(ImmutableList.of(new Text("line1"), new Text("line2")), output);
}