@BeforeClass
/** Creates a MultipleArrayData and fills it with fake data for testing. */
public static void beforeClass() {
data = new MultipleArrayData();
int geneNumber = 5;
int expNumber = 4;
assert (data.isAnnotationLoaded() == false);
ArrayList<ISlideData> features = new ArrayList<ISlideData>();
ISlideData sd = new SlideData();
sd.getSlideMetaData().setFieldNames(new String[] {FIELD_NAME_1, FIELD_NAME_2});
for (int i = 0; i < geneNumber; i++) {
MevAnnotation ann = new MevAnnotation();
ann.setCloneID("clone " + i);
AffySlideDataElement asde =
new AffySlideDataElement(
"test " + i,
new int[] {1, 2},
new int[] {2, 1},
new float[] {1.5f, 2.5f},
new String[] {"testann " + i, "moretestann" + i},
ann);
sd.addSlideDataElement(asde);
}
features.add(sd);
for (int i = 0;
i < expNumber;
i++) { // add four items to the Features set of slidedata, bringing the size to 5
FloatSlideData fsd = new FloatSlideData(sd.getSlideMetaData());
for (int j = 0; j < geneNumber; j++) {
fsd.setIntensities(j, .2f, -.2f);
}
features.add(fsd);
}
data.setFeaturesList(features);
}
@Test
/**
* Tests MultipleArrayData.getFieldNames(). This method should currently only return the field
* names for the annotation loaded into the old annotation model.
*/
public void testGetFieldNames() {
String[] allFilledAnnotationFields = data.getFieldNames();
if (!allFilledAnnotationFields[0].equals(FIELD_NAME_1))
fail("getAllFilledAnnotationFields()[0] is " + allFilledAnnotationFields[0]);
if (!allFilledAnnotationFields[1].equals(FIELD_NAME_2))
fail("getAllFilledAnnotationFields()[1] is " + allFilledAnnotationFields[1]);
if (!allFilledAnnotationFields[2].equals(AnnotationFieldConstants.PROBE_ID))
fail("getAllFilledAnnotationFields()[2] is " + allFilledAnnotationFields[2]);
}
@Test
public void testExperimentSize() {
assert (data.getFeaturesCount() == 4);
}
@Test
public void testFeaturesSize() {
assert (data.getFeaturesCount() == 5);
}