/**
* Unmarshal an XML file to an object.
*
* @param is the InputStream to read from
* @return a collection of business objects
* @throws InterMineException if an error occurs during unmarshalling
*/
public List<FastPathObject> unmarshal(InputStream is) throws InterMineException {
try {
return FullParser.realiseObjects(FullParser.parse(is), model, false);
} catch (Exception e) {
throw new InterMineException("Error during unmarshalling", e);
}
}
@SuppressWarnings({"unchecked", "rawtypes"})
protected List getPublications(ObjectStore os) {
try {
List<Item> items =
FullParser.parse(
getClass()
.getClassLoader()
.getResourceAsStream("EntrezPublicationsRetrieverTest_src.xml"));
return FullParser.realiseObjects(items, Model.getInstanceByName("genomic"), false);
} catch (Exception e) {
throw new RuntimeException(e);
}
}