private void display() {
CyServiceRegistrarImpl register = new CyServiceRegistrarImpl(bc);
CyNetworkViewManager viewManager = register.getService(CyNetworkViewManager.class);
CyNetworkViewFactory viewFactory = register.getService(CyNetworkViewFactory.class);
CyNetworkView networkView = viewFactory.createNetworkView(network);
viewManager.addNetworkView(networkView);
VisualMappingFunctionFactory passthroughFactory =
register.getService(VisualMappingFunctionFactory.class, "(mapping.type=passthrough)");
VisualMappingFunctionFactory continuousFactory =
register.getService(VisualMappingFunctionFactory.class, "(mapping.type=continuous)");
VisualMappingManager vmManager = register.getService(VisualMappingManager.class);
VisualStyleFactory vsFactory = register.getService(VisualStyleFactory.class);
VisualStyle vs =
vsFactory.createVisualStyle(
network.getDefaultNetworkTable().getRow(network.getSUID()).get("name", String.class));
PassthroughMapping pMapping =
(PassthroughMapping)
passthroughFactory.createVisualMappingFunction(
"name", String.class, BasicVisualLexicon.NODE_LABEL);
vs.addVisualMappingFunction(pMapping);
vs.apply(networkView);
ContinuousMapping mapping =
(ContinuousMapping)
continuousFactory.createVisualMappingFunction(
"score", Double.class, BasicVisualLexicon.NODE_FILL_COLOR);
Double val1 = getMinimum(network.getDefaultNodeTable().getColumn("score"));
BoundaryRangeValues<Paint> brv1 =
new BoundaryRangeValues<Paint>(Color.GREEN, Color.GREEN, Color.GREEN);
Double val3 = getMaximum(network.getDefaultNodeTable().getColumn("score"));
BoundaryRangeValues<Paint> brv3 =
new BoundaryRangeValues<Paint>(Color.RED, Color.RED, Color.RED);
Double val2 = (val1 + val3 + val1 + val1) / 4;
BoundaryRangeValues<Paint> brv2 =
new BoundaryRangeValues<Paint>(Color.YELLOW, Color.YELLOW, Color.YELLOW);
mapping.addPoint(val1, brv1);
mapping.addPoint(val2, brv2);
mapping.addPoint(val3, brv3);
vs.addVisualMappingFunction(mapping);
vs.apply(networkView);
vmManager.addVisualStyle(vs);
vmManager.setVisualStyle(vs, networkView);
networkView.updateView();
}
private boolean syncToNode() {
boolean sync = false;
if (vmm.getCurrentVisualStyle() != null) {
Set<VisualPropertyDependency<?>> dependencies =
vmm.getCurrentVisualStyle().getAllVisualPropertyDependencies();
for (VisualPropertyDependency<?> dep : dependencies) {
if (dep.getIdString().equals("nodeCustomGraphicsSizeSync")) {
sync = dep.isDependencyEnabled();
break;
}
}
}
return sync;
}
private void initializeVisualStyleComboBox() {
vsComboBoxModel = new DefaultComboBoxModel();
final VisualStyle defaultVS = this.vmm.getDefaultVisualStyle();
final Set<VisualStyle> styles = vmm.getAllVisualStyles();
for (VisualStyle style : styles) vsComboBoxModel.addElement(style);
visualStyleComboBox = new JComboBox(vsComboBoxModel);
visualStyleComboBox.setSelectedItem(defaultVS);
}
@Override
@SuppressWarnings("unchecked")
public void setValue(final Object value) {
if (value instanceof ContinuousMapping == false)
throw new IllegalArgumentException("Value should be ContinuousMapping: this is " + value);
final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
final CyNetwork currentNetwork = appMgr.getCurrentNetwork();
if (currentNetwork == null) return;
mapping = (ContinuousMapping<K, V>) value;
Class<? extends CyIdentifiable> type =
(Class<? extends CyIdentifiable>) mapping.getVisualProperty().getTargetDataType();
final CyNetworkTableManager netTblMgr = servicesUtil.get(CyNetworkTableManager.class);
final CyTable attr =
netTblMgr.getTable(appMgr.getCurrentNetwork(), type, CyNetwork.DEFAULT_ATTRS);
final VisualMappingManager vmMgr = servicesUtil.get(VisualMappingManager.class);
editorPanel =
new C2CMappingEditorPanel<K, V>(vmMgr.getCurrentVisualStyle(), mapping, attr, servicesUtil);
}
private final void clearAll(
final CyNetworkView netView, final View<? extends CyIdentifiable> nodeView) {
boolean needToUpdateView = false;
final VisualStyle style = vmm.getCurrentVisualStyle();
for (VisualProperty<?> vp : vpSet) {
final boolean lock = nodeView.isDirectlyLocked(vp);
if (lock) {
nodeView.clearValueLock(vp);
needToUpdateView = true;
}
}
if (needToUpdateView) {
style.apply(netView);
netView.updateView();
}
}
/**
* @param netView
* @param view a View<CyNode>, View<CyEdge> or View<CyNetwork> object
* @return
*/
public CyMenuItem build(final CyNetworkView netView, final View<? extends CyIdentifiable> view) {
final Class<? extends CyIdentifiable> targetClass = view.getModel().getClass();
final Queue<VisualLexiconNode> queue =
new PriorityQueue<VisualLexiconNode>(50, new VisualLexiconNodeComparator());
final Map<VisualLexiconNode, JMenuItem> menuMap = new HashMap<VisualLexiconNode, JMenuItem>();
final JMenu rootJMenu = new JMenu(ROOT_MENU_LABEL);
final CyMenuItem rootMenu = new CyMenuItem(rootJMenu, ROOT_GRAVITY);
queue.addAll(root.getChildren());
menuMap.put(root, rootMenu.getMenuItem());
// Node size, width and height
JMenuItem menuItemNodeSize = null;
JMenuItem menuItemNodeWidth = null;
JMenuItem menuItemNodeHeight = null;
final Set<VisualLexiconNode> nextNodes = new HashSet<VisualLexiconNode>();
while (!queue.isEmpty()) {
final VisualLexiconNode curretNode = queue.poll();
final VisualProperty<?> vp = curretNode.getVisualProperty();
if (vp.getTargetDataType().isAssignableFrom(targetClass)) {
final Collection<VisualLexiconNode> children = curretNode.getChildren();
nextNodes.addAll(children);
final JMenuItem menu;
if (children.isEmpty() && PropertySheetUtil.isCompatible(vp)) {
final boolean lock = view.isDirectlyLocked(vp);
if (lock) {
menu = new JMenu(vp.getDisplayName());
final JMenuItem clear = new JMenuItem("Clear");
clear.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
view.clearValueLock(vp);
netView.updateView();
}
});
final JMenuItem edit = new JMenuItem("Edit Bypass");
edit.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
menu.add(clear);
menu.add(edit);
// Update color
menu.setForeground(ENABLED_COLOR);
menu.setIcon(ENABLED_ICON);
menu.setFont(ENABLED_FONT);
VisualLexiconNode parent = curretNode.getParent();
while (parent != root) {
JMenuItem enabledPath = menuMap.get(parent);
enabledPath.setForeground(ENABLED_COLOR);
enabledPath.setIcon(ENABLED_ICON);
enabledPath.setFont(ENABLED_FONT);
parent = parent.getParent();
}
rootJMenu.setIcon(ENABLED_ICON);
rootJMenu.setForeground(ENABLED_COLOR);
rootJMenu.setFont(ENABLED_FONT);
vpSet.add(vp);
} else {
menu = new JMenuItem(vp.getDisplayName());
menu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_WIDTH.getDisplayName())) {
menuItemNodeWidth = menu;
}
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_HEIGHT.getDisplayName())) {
menuItemNodeHeight = menu;
}
}
} else {
menu = new JMenu(vp.getDisplayName());
if (vp.getDisplayName().equalsIgnoreCase(BasicVisualLexicon.NODE_SIZE.getDisplayName())) {
menuItemNodeSize = menu;
vp_nodeSize = vp;
}
}
if (PropertySheetUtil.isCompatible(vp)) {
menuMap.get(curretNode.getParent()).add(menu);
menuMap.put(curretNode, menu);
}
}
if (queue.isEmpty()) {
queue.addAll(nextNodes);
nextNodes.clear();
}
}
// handle node size
if (menuItemNodeSize != null) {
//
JMenuItem menuItemNodeSize1 = new JMenuItem(vp_nodeSize.getDisplayName());
menuItemNodeSize1.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp_nodeSize);
}
});
menuItemNodeSize.add(menuItemNodeSize1);
// Check if nose size is locked
boolean nodeSizeIsLocked = false;
java.util.Iterator it =
vmm.getCurrentVisualStyle().getAllVisualPropertyDependencies().iterator();
while (it.hasNext()) {
org.cytoscape.view.vizmap.VisualPropertyDependency dep =
(org.cytoscape.view.vizmap.VisualPropertyDependency) it.next();
if (dep.getDisplayName().equalsIgnoreCase("Lock node width and height")
&& dep.isDependencyEnabled()) {
nodeSizeIsLocked = true;
}
}
if (nodeSizeIsLocked) {
// In case the Node size is locked, disable menuItem Node_width and Nod_height
if (menuItemNodeWidth != null) menuItemNodeWidth.setEnabled(false);
if (menuItemNodeHeight != null) menuItemNodeHeight.setEnabled(false);
} else {
// In case the Node size is not locked, disable menuItem Node_size
if (menuItemNodeSize1 != null) menuItemNodeSize1.setEnabled(false);
}
}
final JSeparator separator = new JSeparator();
final JMenuItem resetMenu = new JMenuItem("Reset All");
resetMenu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
clearAll(netView, view);
}
});
rootJMenu.add(separator);
rootJMenu.add(resetMenu);
return rootMenu;
}