private Strand getGroupLocationStrand(List<Location> ll) {
Strand returnStrand = null;
for (Location l : ll) {
if (returnStrand == null) returnStrand = l.getStrand();
if (returnStrand != l.getStrand()) return Strand.UNDEFINED;
}
return returnStrand;
}
public static void main(String[] args) {
String[] testStrings = {
"J00194.1:100..202",
"A00001.5:34..45",
"43..129",
"bond(55,110)",
"bond(34,35),join(56..80),complement(45,73)",
"order(complement(30,40),70..80),bond(34,35),join(56,80),complement(45..56)",
"join(join(complement(30,40),complement(70..80)),bond(34,35),join(56,80),complement(45..56))",
"complement(join(complement(2000..4000),complement(70..80)),bond(34,35),join(56,80),complement(45..56))",
};
InsdcParser p = new InsdcParser();
p.setComplexFeaturesAppendMode(complexFeaturesAppendEnum.HIERARCHICAL);
for (String s : testStrings) {
Location l = p.parse(s);
System.out.println(l.toString());
}
}