public static void main(String[] args) {
// ScopDatabase berkeley = new BerkeleyScopInstallation();
// ScopFactory.setScopDatabase(berkeley);
AtomCache cache = new AtomCache();
// whenever you want to get access to SCOP now request it like this:
ScopDatabase scop = ScopFactory.getSCOP("1.75");
ScopFactory.setScopDatabase(scop);
System.out.println(cache.getPath());
System.out.println(cache.getCachePath());
// ... and do something with it
// eg. you can run all the demos that work for the UK - SCOP (currently at version 1.75)
// this demo no automatically picks up the Berkeley version (currently 1.75A)
DemoSCOP scopDemo = new DemoSCOP();
scopDemo.getCategories();
scopDemo.printDomainsForPDB();
scopDemo.traverseHierarchy();
scopDemo.alignSuperfamily();
}
