private void addSubjects(Accessions accession, List<SubjectLinkType> subjectList)
throws PersistenceException, ValidationException, UnknownLookupListException {
SubjectsDAO subjectDao = new SubjectsDAO();
Subjects subject;
ArchDescriptionSubjects accessionSubject;
String type;
String source;
for (SubjectLinkType thisSubject : subjectList) {
type =
cleanAndTrim(
thisSubject.getSubjectTermType(),
Subjects.class,
Subjects.PROPERTYNAME_SUBJECT_TERM_TYPE);
if (type == null) {
type = "ingest";
}
source =
cleanAndTrim(
thisSubject.getSubjectSource(), Subjects.class, Subjects.PROPERTYNAME_SUBJECT_SOURCE);
if (source == null) {
source = "ingest";
}
subject =
subjectDao.lookupSubject(
cleanAndTrim(
thisSubject.getSubjectTerm(), Subjects.class, Subjects.PROPERTYNAME_SUBJECT_TERM),
type,
source,
true);
accessionSubject = new ArchDescriptionSubjects(subject, accession);
accession.addSubject(accessionSubject);
}
}
private void parseAccessionNumber(Accessions accession, IdentifierType value) {
String composite = value.getComposite();
if (composite != null) {
StringTokenizer st = new StringTokenizer(composite, "./-");
int count = 0;
String thisToken;
while (st.hasMoreTokens()) {
count++;
thisToken = StringHelper.cleanUpWhiteSpace((String) st.nextElement());
if (count == 1) {
accession.setAccessionNumber1(
StringHelper.trimToLength(
thisToken,
ATFieldInfo.checkFieldLength(
Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_1)));
} else if (count == 2) {
accession.setAccessionNumber2(
StringHelper.trimToLength(
thisToken,
ATFieldInfo.checkFieldLength(
Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_2)));
} else if (count == 3) {
accession.setAccessionNumber3(
StringHelper.trimToLength(
thisToken,
ATFieldInfo.checkFieldLength(
Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_3)));
} else if (count == 4) {
accession.setAccessionNumber4(
StringHelper.trimToLength(
thisToken,
ATFieldInfo.checkFieldLength(
Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_4)));
}
}
} else {
accession.setAccessionNumber1(
cleanAndTrim(
value.getPart1(), Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_1));
if (value.getPart2() != null) {
accession.setAccessionNumber2(
cleanAndTrim(
value.getPart2(), Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_2));
}
if (value.getPart3() != null) {
accession.setAccessionNumber3(
cleanAndTrim(
value.getPart3(), Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_3));
}
if (value.getPart4() != null) {
accession.setAccessionNumber4(
cleanAndTrim(
value.getPart4(), Accessions.class, Accessions.PROPERTYNAME_ACCESSION_NUMBER_4));
}
}
}
private void addNames(Accessions accession, List<NameLinkType> nameList)
throws IllegalAccessException, InvocationTargetException, DuplicateLinkException,
UnknownLookupListException, PersistenceException, NoSuchAlgorithmException,
UnsupportedEncodingException {
NamesDAO namesDao = new NamesDAO();
ArchDescriptionNames accessionName;
for (NameLinkType thisNameLink : nameList) {
accessionName =
new ArchDescriptionNames(lookupName(namesDao, thisNameLink.getName()), accession);
ImportUtils.nullSafeSet(
accessionName,
ArchDescriptionNames.PROPERTYNAME_NAME_LINK_FUNCTION,
thisNameLink.getNameLinkFunction());
ImportUtils.nullSafeSet(
accessionName, ArchDescriptionNames.PROPERTYNAME_FORM, thisNameLink.getNameLinkForm());
ImportUtils.nullSafeSet(
accessionName, ArchDescriptionNames.PROPERTYNAME_ROLE, thisNameLink.getNameLinkRole());
accession.addName(accessionName);
}
}
/**
* Import the file.
*
* @param importFile the file to import.
* @param controller the controller to use.
* @param progressPanel - the progress panel to display heartbeat messages
* @return if we succeded
*/
public boolean importFile(
File importFile, DomainImportController controller, InfiniteProgressPanel progressPanel)
throws ImportException {
Collection<DomainObject> collection = new ArrayList<DomainObject>();
if (importFile != null) {
JAXBContext context;
try {
LookupListUtils.initIngestReport();
context = JAXBContext.newInstance("org.archiviststoolkit.structure.accessionImport");
AccessionRecords accessionRecords =
(AccessionRecords) context.createUnmarshaller().unmarshal(importFile);
Accessions accession;
int recordCount = 1;
progressPanel.setTextLine("Importing...", 1);
PropertyDescriptor[] descriptors = PropertyUtils.getPropertyDescriptors(RecordType.class);
for (RecordType record : accessionRecords.getRecord()) {
// check to see if the process was cancelled at this point if so just return
if (progressPanel.isProcessCancelled()) {
return false;
}
progressPanel.setTextLine("Processing record " + recordCount, 2);
accession = new Accessions();
accession.setRepository(repository);
for (PropertyDescriptor descriptor : descriptors) {
Class propertyType = descriptor.getPropertyType();
if (propertyType == XMLGregorianCalendar.class) {
ImportUtils.nullSafeDateSet(
accession,
descriptor.getName(),
(XMLGregorianCalendar) descriptor.getReadMethod().invoke(record));
} else if (propertyType == String.class
|| propertyType == BigInteger.class
|| propertyType == BigDecimal.class) {
ImportUtils.nullSafeSet(
accession, descriptor.getName(), descriptor.getReadMethod().invoke(record));
} else if (propertyType == Boolean.class) {
// this hack is needed because jaxb has a bug and the read method starts
// with "is" instead of "get"
String writeMethodName = descriptor.getWriteMethod().getName();
String readMethodName = writeMethodName.replaceFirst("set", "is");
Method readMethod = RecordType.class.getMethod(readMethodName);
ImportUtils.nullSafeSet(accession, descriptor.getName(), readMethod.invoke(record));
}
}
parseAccessionNumber(accession, record.getAccessionNumber());
addSubjects(accession, record.getSubjectLink());
addNames(accession, record.getNameLink());
addResource(
accession,
record.getResourceIdentifier(),
controller,
accession.getAccessionNumber(),
recordCount);
collection.add(accession);
recordCount++;
}
controller.domainImport(collection, ApplicationFrame.getInstance(), progressPanel);
ImportExportLogDialog dialog =
new ImportExportLogDialog(
controller.constructFinalImportLogText()
+ "\n\n"
+ LookupListUtils.getIngestReport(),
ImportExportLogDialog.DIALOG_TYPE_IMPORT);
progressPanel.close();
dialog.showDialog();
} catch (JAXBException e) {
progressPanel.close();
new ErrorDialog(
ApplicationFrame.getInstance(), "There is a problem importing accessions.", e)
.showDialog();
} catch (IllegalAccessException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (InvocationTargetException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (UnknownLookupListException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (ValidationException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (PersistenceException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (DuplicateLinkException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (NoSuchMethodException e) {
progressPanel.close();
new ErrorDialog("", e).showDialog();
} catch (NoSuchAlgorithmException e) {
new ErrorDialog("", e).showDialog();
} catch (UnsupportedEncodingException e) {
new ErrorDialog("", e).showDialog();
}
}
return (true);
}
private void addResource(
Accessions accession,
IdentifierType resourceId,
DomainImportController controller,
String accesionNumber,
int recordNumber)
throws ImportException {
if (resourceId != null) {
String resourceId1;
String resourceId2 = null;
String resourceId3 = null;
String resourceId4 = null;
if (resourceId.getComposite() != null) {
resourceId1 =
StringHelper.trimToLength(
resourceId.getComposite(),
ATFieldInfo.checkFieldLength(
Resources.class, Resources.PROPERTYNAME_RESOURCE_IDENTIFIER_1));
} else {
resourceId1 = resourceId.getPart1();
resourceId2 = resourceId.getPart2();
resourceId3 = resourceId.getPart3();
resourceId4 = resourceId.getPart4();
}
ResourcesDAO resourceDao = new ResourcesDAO();
Resources resource;
if (resourceCreation.equalsIgnoreCase(AccessionImportXmlHandler.RESOURCE_CREATION_NONE)) {
resource =
resourceDao.lookupResource(
resourceId1, resourceId2, resourceId3, resourceId4, false, repository);
} else {
resource =
resourceDao.lookupResource(
resourceId1, resourceId2, resourceId3, resourceId4, true, repository);
}
if (resourceDao.getNewRecordCreated()
&& resourceCreation.equalsIgnoreCase(AccessionImportXmlHandler.RESOURCE_CREATION_FULL)) {
try {
resource = (Resources) resourceDao.findByPrimaryKeyLongSession(resource.getIdentifier());
resource.populateResourceFromAccession(accession);
resourceDao.updateLongSession(resource);
} catch (LookupException e) {
throw new ImportException(
"Error creating resource: " + resourceId + ", " + e.getMessage(), e);
} catch (PersistenceException e) {
throw new ImportException(
"Error creating resource: " + resourceId + ", " + e.getMessage(), e);
} catch (DuplicateLinkException e) {
throw new ImportException(
"Error creating resource: duplicate link" + resourceId + ", " + e.getMessage(), e);
}
}
if (resource != null) {
AccessionsResources accessionResource = new AccessionsResources(resource, accession);
accession.addAccessionsResources(accessionResource);
}
} else {
if (!resourceCreation.equalsIgnoreCase(AccessionImportXmlHandler.RESOURCE_CREATION_NONE)) {
controller.addLineToImportLog(
"Record # "
+ recordNumber
+ " - "
+ accesionNumber
+ " has no resource id so no resource record was created");
}
}
}