@Override
public DBObject filterInternal(String url, WebPage webPage, DBObject parsedDBObject) {
String pageText = webPage.getPageText();
DocumentFragment doc = parse(pageText);
// 获取产品信息
NodeList nodes = selectNodeList(doc, "//UL[@class='xieceprodutu']/li");
if (nodes != null && nodes.getLength() > 0) {
for (int i = 0; i < nodes.getLength(); i++) {
Node n = nodes.item(i);
String content = n.getTextContent();
// 中文冒号分隔
String[] nodeTexts = StringUtils.split(content, "：");
// 容错处理，英文冒号分隔
if (nodeTexts.length <= 1) {
nodeTexts = StringUtils.split(content, ":");
}
if (nodeTexts.length > 1) {
putKeyValue(parsedDBObject, nodeTexts[0].trim(), nodeTexts[1].trim());
}
}
return parsedDBObject;
} else {
return null;
}
}
protected Map<String, String> extractDatabases(final String migrations)
throws MojoExecutionException {
String[] migrationNames = StringUtils.stripAll(StringUtils.split(migrations, ","));
final List<String> availableDatabases = getAvailableDatabases();
if (migrationNames == null) {
return Collections.<String, String>emptyMap();
}
final Map<String, String> databases = Maps.newHashMap();
if (migrationNames.length == 1 && migrationNames[0].equalsIgnoreCase("all")) {
migrationNames = availableDatabases.toArray(new String[availableDatabases.size()]);
}
for (String migration : migrationNames) {
final String[] migrationFields = StringUtils.stripAll(StringUtils.split(migration, "="));
if (migrationFields == null || migrationFields.length < 1 || migrationFields.length > 2) {
throw new MojoExecutionException("Migration " + migration + " is invalid.");
}
if (!availableDatabases.contains(migrationFields[0])) {
throw new MojoExecutionException("Database " + migrationFields[0] + " is unknown!");
}
databases.put(migrationFields[0], (migrationFields.length == 1 ? null : migrationFields[1]));
}
return databases;
}
private Column getColumn(final Attributes attributes) {
final String type = attributes.getValue("type");
final String[] dataTypeAndName = StringUtils.split(type, ",");
Validate.notNull(
dataTypeAndName,
"The 'type' attribute of the column element must contain a comma separated value pair, eg, type=\"12,varchar\"."
+ getErrorMessage());
final int dataType = Integer.parseInt(dataTypeAndName[0]);
final String typeName = dataTypeAndName[1];
int columnSize;
int scale = 0;
final String size = attributes.getValue("size");
if (size.contains(",")) {
final String[] precisionScale = StringUtils.split(size, ",");
columnSize = Integer.parseInt(precisionScale[0]);
scale = Integer.parseInt(precisionScale[1]);
} else {
columnSize = Integer.parseInt(size);
}
if (StringUtils.isNotBlank(attributes.getValue("scale"))) {
scale = Integer.parseInt(attributes.getValue("scale"));
}
final Column column =
new Column(
attributes.getValue(DatabaseXmlUtils.NAME), dataType, typeName, columnSize, scale);
column.setDescription(attributes.getValue(DatabaseXmlUtils.DESCRIPTION));
column.setPrimaryKey(Boolean.parseBoolean(attributes.getValue("primaryKey")));
column.setRequired(Boolean.parseBoolean(attributes.getValue("required")));
return column;
}
private void init() {
List<String> lines = readUtil.readByLine();
for (String line : lines) {
String[] paras = StringUtils.split(line, "$");
String[] words = StringUtils.split(paras[0], " ");
Template template = new Template(words, paras[1]);
templates.add(template);
}
}
@SuppressWarnings("unused")
@PostConstruct
private void init() {
if (!isBlank(typeSystemDescPathsString)) {
typeSystemDescPaths = StringUtils.split(typeSystemDescPathsString, ";,");
}
if (!isBlank(typeSystemDescNamesString)) {
typeSystemDescNames = StringUtils.split(typeSystemDescNamesString, ";,");
}
}
private void loadPreferences() {
SharedPreferences sp = PreferenceManager.getDefaultSharedPreferences(context);
// User Interface
theme = readThemeValue(sp.getString(PREF_THEME, "0"));
if (sp.getBoolean(PREF_EXPANDED_NOTIFICATION, false)) {
notifyPriority = NotificationCompat.PRIORITY_MAX;
} else {
notifyPriority = NotificationCompat.PRIORITY_DEFAULT;
}
hiddenDrawerItems =
Arrays.asList(StringUtils.split(sp.getString(PREF_HIDDEN_DRAWER_ITEMS, ""), ','));
persistNotify = sp.getBoolean(PREF_PERSISTENT_NOTIFICATION, false);
// Queue
enqueueAtFront = sp.getBoolean(PREF_QUEUE_ADD_TO_FRONT, false);
// Playback
pauseOnHeadsetDisconnect = sp.getBoolean(PREF_PAUSE_ON_HEADSET_DISCONNECT, true);
unpauseOnHeadsetReconnect = sp.getBoolean(PREF_UNPAUSE_ON_HEADSET_RECONNECT, true);
followQueue = sp.getBoolean(PREF_FOLLOW_QUEUE, false);
autoDelete = sp.getBoolean(PREF_AUTO_DELETE, false);
smartMarkAsPlayedSecs = Integer.valueOf(sp.getString(PREF_SMART_MARK_AS_PLAYED_SECS, "30"));
playbackSpeedArray = readPlaybackSpeedArray(sp.getString(PREF_PLAYBACK_SPEED_ARRAY, null));
pauseForFocusLoss = sp.getBoolean(PREF_PAUSE_PLAYBACK_FOR_FOCUS_LOSS, false);
// Network
updateInterval = readUpdateInterval(sp.getString(PREF_UPDATE_INTERVAL, "0"));
allowMobileUpdate = sp.getBoolean(PREF_MOBILE_UPDATE, false);
parallelDownloads = Integer.valueOf(sp.getString(PREF_PARALLEL_DOWNLOADS, "6"));
EPISODE_CACHE_SIZE_UNLIMITED =
context.getResources().getInteger(R.integer.episode_cache_size_unlimited);
episodeCacheSize = readEpisodeCacheSizeInternal(sp.getString(PREF_EPISODE_CACHE_SIZE, "20"));
enableAutodownload = sp.getBoolean(PREF_ENABLE_AUTODL, false);
enableAutodownloadOnBattery = sp.getBoolean(PREF_ENABLE_AUTODL_ON_BATTERY, true);
enableAutodownloadWifiFilter = sp.getBoolean(PREF_ENABLE_AUTODL_WIFI_FILTER, false);
autodownloadSelectedNetworks =
StringUtils.split(sp.getString(PREF_AUTODL_SELECTED_NETWORKS, ""), ',');
// Services
autoFlattr = sp.getBoolean(PREF_AUTO_FLATTR, false);
autoFlattrPlayedDurationThreshold =
sp.getFloat(
PREF_AUTO_FLATTR_PLAYED_DURATION_THRESHOLD,
PREF_AUTO_FLATTR_PLAYED_DURATION_THRESHOLD_DEFAULT);
// MediaPlayer
playbackSpeed = sp.getString(PREF_PLAYBACK_SPEED, "1.0");
fastForwardSecs = sp.getInt(PREF_FAST_FORWARD_SECS, 30);
rewindSecs = sp.getInt(PREF_REWIND_SECS, 30);
queueLocked = sp.getBoolean(PREF_QUEUE_LOCKED, false);
}
/** 保存角色的系统菜单信息 */
@RequestMapping("/saverole")
@ResponseBody
public Object save(@RequestParam Long roleId, @RequestParam String moduleIds) {
try {
ArrayList<Long> modulesIdList = Lists.newArrayList();
if (null == roleId) {
return new ExtReturn(false, "角色不能为空！");
}
if (StringUtils.isBlank(moduleIds)) {
return new ExtReturn(false, "选择的资源不能为空！");
} else {
String[] modules = StringUtils.split(moduleIds, ",");
if (null == modules || modules.length == 0) {
return new ExtReturn(false, "选择的资源不能为空！");
}
for (int i = 0; i < modules.length; i++) {
modulesIdList.add(new Long(modules[i]));
}
}
logger.debug("save() - String roleId={}", roleId);
logger.debug("save() - String moduleIds={}", moduleIds);
String result = this.baseModulesService.saveModule(roleId, modulesIdList);
if ("01".equals(result)) {
return new ExtReturn(true, "保存成功！");
} else if ("00".equals(result)) {
return new ExtReturn(false, "保存失败！");
} else {
return new ExtReturn(false, result);
}
} catch (Exception e) {
logger.error(WebConstants.EXCEPTION, e);
return new ExceptionReturn(e);
}
}
public Object getReferencedProperty(
final GraphObject entity, final String refKey, final Object initialData, final int depth)
throws FrameworkException {
final String DEFAULT_VALUE_SEP = "!";
final String[] parts = refKey.split("[\\.]+");
Object _data = initialData;
// walk through template parts
for (int i = 0; i < parts.length; i++) {
String key = parts[i];
String defaultValue = null;
if (StringUtils.contains(key, DEFAULT_VALUE_SEP)) {
String[] ref = StringUtils.split(key, DEFAULT_VALUE_SEP);
key = ref[0];
if (ref.length > 1) {
defaultValue = ref[1];
}
}
_data = evaluate(entity, key, _data, defaultValue, i + depth);
}
return _data;
}
public void addItemToCart(Long itemId) {
// 判断该商品是否存在购物车中
// 如果存在，数量相加
// 如果不存在，直接保存到数据库
Cart record = new Cart();
record.setItemId(itemId);
record.setUserId(UserThreadLocal.get().getId());
Cart cart = this.cartDao.selectOne(record);
if (null == cart) {
Item item = this.itemService.queryItemById(itemId);
cart = new Cart();
cart.setId(null);
cart.setItemId(itemId);
cart.setNum(1); // TODO 默认为1
cart.setCreated(new Date());
cart.setUpdated(cart.getCreated());
cart.setUserId(record.getUserId());
// 设置商品的基本数据
cart.setItemTitle(item.getTitle());
cart.setItemPrice(item.getPrice());
String itemImage = item.getImage();
if (StringUtils.isNotEmpty(itemImage)) {
cart.setItemImage(StringUtils.split(itemImage, ",")[0]);
}
this.cartDao.insert(cart);
} else {
cart.setNum(cart.getNum() + 1); // TODO 先默认为1，项目实战中实现指定的购买数量
cart.setUpdated(new Date());
this.cartDao.updateByPrimaryKey(cart);
}
}
/**
* テキストでフィルタ
*
* @param ship
* @param filter
*/
private static boolean textFilter(ShipDto ship, ShipFilterDto filter) {
// 検索ワード
String[] words = StringUtils.split(filter.nametext, " ");
// 検索対象
// 名前
String name = ship.getName();
// 艦種
String type = ship.getType();
// 装備
List<String> items = ship.getSlot();
// テキストが入力されている場合処理する
if (filter.regexp) {
// 正規表現で検索
for (int i = 0; i < words.length; i++) {
Pattern pattern;
try {
pattern = Pattern.compile(words[i]);
} catch (PatternSyntaxException e) {
// 無効な正規表現はfalseを返す
return false;
}
boolean find = false;
// 名前で検索
find = find ? find : pattern.matcher(name).find();
// 艦種で検索
find = find ? find : pattern.matcher(type).find();
// 装備で検索
for (String item : items) {
find = find ? find : pattern.matcher(item).find();
}
if (!find) {
// どれにもマッチしない場合
return false;
}
}
} else {
// 部分一致で検索する
for (int i = 0; i < words.length; i++) {
boolean find = false;
// 名前で検索
find = find ? find : name.indexOf(words[i]) != -1;
// 艦種で検索
find = find ? find : type.indexOf(words[i]) != -1;
// 装備で検索
for (String item : items) {
find = find ? find : item.indexOf(words[i]) != -1;
}
if (!find) {
// どれにもマッチしない場合
return false;
}
}
}
return true;
}
@Transactional
public AccessKey updateAccessKeyFromOAuthGrant(OAuthGrant grant, User user, Date now) {
AccessKey existing = find(grant.getAccessKey().getId(), user.getId());
deleteAccessKeyPermissions(existing);
if (grant.getAccessType().equals(AccessType.ONLINE)) {
Date expirationDate = new Date(now.getTime() + 600000); // the key is valid for 10 minutes
existing.setExpirationDate(expirationDate);
} else {
existing.setExpirationDate(null);
}
existing.setLabel(
String.format(
Messages.OAUTH_GRANT_TOKEN_LABEL,
grant.getClient().getName(),
System.currentTimeMillis()));
Set<AccessKeyPermission> permissions = new HashSet<>();
AccessKeyPermission permission = new AccessKeyPermission();
permission.setDomainArray(grant.getClient().getDomain());
permission.setActionsArray(StringUtils.split(grant.getScope(), ' '));
permission.setSubnetsArray(grant.getClient().getSubnet());
permission.setNetworkIds(grant.getNetworkIds());
permissions.add(permission);
existing.setPermissions(permissions);
AccessKeyProcessor keyProcessor = new AccessKeyProcessor();
String key = keyProcessor.generateKey();
existing.setKey(key);
for (AccessKeyPermission current : permissions) {
current.setAccessKey(existing);
genericDAO.persist(current);
}
return existing;
}
@Transactional
public AccessKey createAccessKeyFromOAuthGrant(OAuthGrant grant, User user, Date now) {
AccessKey newKey = new AccessKey();
newKey.setType(AccessKeyType.OAUTH);
if (grant.getAccessType().equals(AccessType.ONLINE)) {
Date expirationDate = new Date(now.getTime() + 600000); // the key is valid for 10 minutes
newKey.setExpirationDate(expirationDate);
}
newKey.setUser(user);
newKey.setLabel(
String.format(
Messages.OAUTH_GRANT_TOKEN_LABEL,
grant.getClient().getName(),
System.currentTimeMillis()));
Set<AccessKeyPermission> permissions = new HashSet<>();
AccessKeyPermission permission = new AccessKeyPermission();
permission.setDomainArray(grant.getClient().getDomain());
permission.setActionsArray(StringUtils.split(grant.getScope(), ' '));
permission.setSubnetsArray(grant.getClient().getSubnet());
permission.setNetworkIds(grant.getNetworkIds());
permissions.add(permission);
newKey.setPermissions(permissions);
create(user, newKey);
return newKey;
}
@Override
public String importQuestionnareOds(String filename, String questionnaireName) throws Exception {
SpreadsheetDocument document = SpreadsheetDocument.loadDocument(new File(filename));
Table sheet = document.getSheetByIndex(0);
List<String> questions = new ArrayList<>();
for (int i = 1; i < sheet.getRowList().size(); i++) {
Row row = sheet.getRowList().get(i);
String question = getCellStringValue(row, 0);
if (StringUtils.isBlank(question)) {
break;
}
String levelString = getCellStringValue(row, 1);
long level = Long.valueOf(StringUtils.replace(levelString, "D", ""));
String tagsString = getCellStringValue(row, 2);
List<String> tags = Collections.emptyList();
if (StringUtils.isNotBlank(tagsString)) {
tags = Lists.newArrayList(StringUtils.split(tagsString, ", "));
}
String tip = StringUtils.defaultIfBlank(getCellStringValue(row, 3), null);
XContentBuilder builder =
jsonBuilder()
.startObject()
.field("title", question)
.field("level", level)
.field("tags", tags)
.field("tip", tip)
.endObject();
IndexResponse indexResponse =
client
.prepareIndex(domainResolver.resolveQuestionIndex(), Types.question)
.setSource(builder)
.execute()
.actionGet();
questions.add(indexResponse.getId());
}
XContentBuilder questionnaireBuilder =
jsonBuilder()
.startObject()
.field("name", questionnaireName)
.field("questions", questions)
.endObject();
IndexResponse indexResponse =
client
.prepareIndex(domainResolver.resolveQuestionIndex(), Types.questionnaire)
.setSource(questionnaireBuilder)
.execute()
.actionGet();
return indexResponse.getId();
}
@RequestMapping("/ls")
public String ls(HttpServletRequest request, Model model, String path) {
String zkServer = (String) request.getSession().getAttribute(Keys.KEY_ZKSERVER);
if (StringUtils.isBlank(zkServer)) {
return "redirect:/";
}
// 处理zkPath
path = this.processZkPath(path);
model.addAttribute("paths", Arrays.asList(StringUtils.split(path, "/")));
// zk数据读取
ZkData zkData = this.readZkData(zkServer, path);
if (null != zkData) {
model.addAttribute("children", zkData.getChildren());
model.addAttribute("data", zkData.getDataString());
model.addAttribute("dataSize", zkData.getData().length);
try {
Map<String, Object> statMap = PropertyUtils.describe(zkData.getStat());
statMap.remove("class");
model.addAttribute("stat", statMap);
} catch (Exception e) {
LOGGER.error("", e);
}
}
return "ls";
}
/**
* Get a fastTrack token
*
* @param packageId The id of the package in which to get the FastTrack Token
* @param signing whether signing or not
* @return The fastTrack token
*/
private String getFastTrackToken(PackageId packageId, Boolean signing) {
String fastTrackUrl = getFastTrackUrl(packageId, signing);
String finalUrl = RedirectResolver.resolveUrlAfterRedirect(fastTrackUrl);
String[] split = StringUtils.split(finalUrl, '=');
return split[split.length - 1];
}
private Card loadCardFromPSVLine(final String line) {
final String[] lineValues = StringUtils.split(line, this.delimiter);
int x = 0;
// Name|Expansion|Action|Attack|Curse|Duration|Reaction|Treasure|Victory|Cost|Pot|Action|Buy|Card|Coin|VP|Text
return new CardBuilder()
.setName(lineValues[x++])
.setIteration(lineValues[x++])
.setAction(this.convertInputToBoolean(lineValues[x++]))
.setAttack(this.convertInputToBoolean(lineValues[x++]))
.setCurse(this.convertInputToBoolean(lineValues[x++]))
.setDuration(this.convertInputToBoolean(lineValues[x++]))
.setReaction(this.convertInputToBoolean(lineValues[x++]))
.setTreasure(this.convertInputToBoolean(lineValues[x++]))
.setVictory(this.convertInputToBoolean(lineValues[x++]))
.setCost(NumberUtils.toInt(lineValues[x++]))
.setPotionCost(NumberUtils.toInt(lineValues[x++]))
.setPlusAction(NumberUtils.toInt(lineValues[x++]))
.setPlusBuy(NumberUtils.toInt(lineValues[x++]))
.setPlusCard(NumberUtils.toInt(lineValues[x++]))
.setPlusCoin(NumberUtils.toInt(lineValues[x++]))
.setVictoryPoints(NumberUtils.toInt(lineValues[x++]))
.setCardText(lineValues[x])
.build();
}
public static String normalize(String path) throws IllegalArgumentException {
if (path == null) {
return null;
}
String[] segs = StringUtils.split(path, SEPARATORS);
List<String> names = new ArrayList<String>(segs.length < 32 ? segs.length : 32);
for (String seg : segs) {
if (seg.equals("")) {
continue;
}
if (seg.equals(".")) {
continue;
}
if (seg.equals("..")) {
if (names.size() == 0) {
continue;
}
names.remove(names.size() - 1);
continue;
}
names.add(validateName(seg));
}
StringBuilder sb = new StringBuilder();
for (String name : names) {
sb.append(SEPARATOR);
sb.append(name);
}
return sb.toString();
}
@Override
public String locate(final String statementName, final StatementContext context)
throws Exception {
if (StringUtils.isEmpty(statementName)) {
throw new IllegalStateException("Statement Name can not be empty/null!");
}
if (statementName.startsWith(markerString)) {
return defaultSqlLocator.getTemplate(statementName.substring(markerString.length()), context);
}
final String[] fieldElements = StringUtils.split(statementName, ':');
if (fieldElements.length != 2 || !fieldElements[1].startsWith(markerString)) {
return defaultLocate(statementName, context);
}
// If the class in the tuple is actually the class for which this locator is intended, don't
// load
// everything again, just reuse the existing sqllocator.
if (defaultClassName.equals(fieldElements[0])) {
return defaultSqlLocator.getTemplate(
fieldElements[1].substring(markerString.length()), context);
}
try {
final SqlLocator sqlLocator = new SqlLocator(Class.forName(fieldElements[0]));
return sqlLocator.getTemplate(fieldElements[1].substring(markerString.length()), context);
} catch (ClassNotFoundException cnfe) {
LOG.trace(cnfe, "Ignoring, falling back to default locator");
} catch (IllegalArgumentException ex) {
LOG.trace(ex, "Ignoring, falling back to default locator");
}
return defaultLocate(statementName, context);
}
/** searchParams中key的格式为OPERATOR_FIELDNAME */
public static Map<String, SearchFilter> parse(Map<String, Object> searchParams) {
Map<String, SearchFilter> filters = Maps.newHashMap();
for (Entry<String, Object> entry : searchParams.entrySet()) {
// 过滤掉空值
String key = entry.getKey();
Object value = entry.getValue();
if (StringUtils.isBlank((String) value)) {
continue;
}
// 拆分operator与filedAttribute
String[] names = StringUtils.split(key, "_");
if (names.length != 2) {
throw new IllegalArgumentException(key + " is not a valid search filter name");
}
String filedName = names[1];
Operator operator = Operator.valueOf(names[0]);
// 创建searchFilter
SearchFilter filter = new SearchFilter(filedName, operator, value);
filters.put(key, filter);
}
return filters;
}
public Collection<JSONObject> asJson() {
Map<String, JSONObject> res = new HashMap<>();
for (Entry<String, AtomicInteger> entry : stat.entrySet()) {
String[] split = StringUtils.split(entry.getKey(), PATH_SEPARATOR);
if (!res.containsKey(split[0])) {
JSONObject obj = new JSONObject();
obj.put("name", split[0]);
obj.put("tags_info", new JSONObject());
res.put(split[0], obj);
}
JSONObject tagInfo = res.get(split[0]).getJSONObject("tags_info").optJSONObject(split[1]);
if (tagInfo == null) {
tagInfo = new JSONObject();
res.get(split[0]).getJSONObject("tags_info").put(split[1], tagInfo);
}
if (split.length > 2) {
tagInfo.put(split[2], entry.getValue().get());
if (!"_error".equals(split[2])) {
tagInfo.put("_total", tagInfo.optInt("_total") + entry.getValue().get());
}
}
}
return res.values();
}
private boolean basicAuth(HttpServerRequest request, String encodedAuth) {
byte[] authBytes = Base64.decodeBase64(encodedAuth);
String decodedString = new String(authBytes);
String[] splitAuth = StringUtils.split(StringUtils.trim(decodedString), ":"); // $NON-NLS-1$
if (splitAuth.length != 2) return false;
if (fileBasicAuthData.containsKey(splitAuth[0])) {
String storedHash = new String(Base64.decodeBase64(fileBasicAuthData.get(splitAuth[0])));
MessageDigest digest;
try {
digest = MessageDigest.getInstance("SHA-256"); // $NON-NLS-1$
digest.update(splitAuth[1].getBytes());
String receivedHash = new String(digest.digest());
if (storedHash.equals(receivedHash)) {
return true;
}
} catch (NoSuchAlgorithmException e) {
logger.error(e.getMessage(), e.getCause());
}
}
request
.response()
.headers()
.add(
"WWW-Authenticate",
"Basic realm=\"" + config.getRealm() + "\""); // $NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
return false;
}
/**
* Creating a map which its key is a gene name and its value is the mappability. It also
* calculates the number of tiles which are within the gene.
*
* @param btOutputFileLines BowTie output file name
* @param readFileLines Reads file content in a list
* @param chr1FileLines chromosome file name in a list
* @return
* @throws IOException
*/
private Map<String, Mappability> createMappability(
List<String> btOutputFileLines, List<String> readFileLines, List<String> chr1FileLines)
throws IOException {
Map<String, Mappability> result = new HashMap<>();
for (String btOutputLine : btOutputFileLines) {
String[] splittedLine = StringUtils.split(btOutputLine, FileUtils.SEPARATOR_TAB);
Integer tileStart = getTileStartIndex(splittedLine);
Integer tileEnd = getTileEndIndex(splittedLine);
Gene gene = getGeneId(splittedLine);
String geneName = gene.getName();
if (!result.containsKey(geneName)) {
result.put(geneName, new Mappability(0, getTotalNumberOfTiles(geneName, readFileLines)));
}
Mappability output = result.get(geneName);
if (isTileWithinGene(tileStart, tileEnd, gene)) {
output.addNumberOfMatches();
}
result.put(geneName, output);
}
// Add the missing tiles from output
for (int lineIndex = 0; lineIndex < chr1FileLines.size(); lineIndex++) {
if (lineIndex % 2 == 0) {
// Reading the first line
String geneName =
StringUtils.substringAfter(chr1FileLines.get(lineIndex), FileUtils.CHR_INDICATOR);
if (!result.containsKey(geneName)) {
result.put(geneName, null);
}
}
chr1FileLines.get(lineIndex);
}
return result;
}
@Override
public LongRange[] parsePatternData(String data) {
if (data == null) {
return null;
}
if (data.length() < 3) // smallest range is 3 chars, "1-2"
{
return null;
}
if ((data.charAt(0) == '[') && (data.charAt(data.length() - 1) == ']')) {
if (data.length() < 5) // smallest multi-range is 5 chars, "[1-2]"
{
return null;
}
data = data.substring(1, data.length() - 1);
final String[] ranges = StringUtils.split(data, ',');
final LongRange[] result = new LongRange[ranges.length];
for (int i = 0, rangesLength = ranges.length; i < rangesLength; i++) {
final String str = ranges[i];
final LongRange range = parseSingleRange(str);
if (range == null) {
return null;
}
result[i] = range;
}
return result;
}
final LongRange range = parseSingleRange(data);
if (range == null) {
return null;
}
return new LongRange[] {range};
}
@Override
public void onSharedPreferenceChanged(SharedPreferences sp, String key) {
if (AppConfig.DEBUG) Log.d(TAG, "Registered change of user preferences. Key: " + key);
if (key.equals(PREF_DOWNLOAD_MEDIA_ON_WIFI_ONLY)) {
downloadMediaOnWifiOnly = sp.getBoolean(PREF_DOWNLOAD_MEDIA_ON_WIFI_ONLY, true);
} else if (key.equals(PREF_MOBILE_UPDATE)) {
allowMobileUpdate = sp.getBoolean(PREF_MOBILE_UPDATE, false);
} else if (key.equals(PREF_FOLLOW_QUEUE)) {
followQueue = sp.getBoolean(PREF_FOLLOW_QUEUE, false);
} else if (key.equals(PREF_UPDATE_INTERVAL)) {
updateInterval = readUpdateInterval(sp.getString(PREF_UPDATE_INTERVAL, "0"));
restartUpdateAlarm(updateInterval);
} else if (key.equals(PREF_AUTO_DELETE)) {
autoDelete = sp.getBoolean(PREF_AUTO_DELETE, false);
} else if (key.equals(PREF_DISPLAY_ONLY_EPISODES)) {
displayOnlyEpisodes = sp.getBoolean(PREF_DISPLAY_ONLY_EPISODES, false);
} else if (key.equals(PREF_THEME)) {
theme = readThemeValue(sp.getString(PREF_THEME, ""));
} else if (key.equals(PREF_ENABLE_AUTODL_WIFI_FILTER)) {
enableAutodownloadWifiFilter = sp.getBoolean(PREF_ENABLE_AUTODL_WIFI_FILTER, false);
} else if (key.equals(PREF_AUTODL_SELECTED_NETWORKS)) {
autodownloadSelectedNetworks =
StringUtils.split(sp.getString(PREF_AUTODL_SELECTED_NETWORKS, ""), ',');
} else if (key.equals(PREF_EPISODE_CACHE_SIZE)) {
episodeCacheSize = Integer.valueOf(sp.getString(PREF_EPISODE_CACHE_SIZE, "20"));
}
}
/**
* Extracts the geneID out of the splitted file line.
*
* @param splittedLine
* @return
*/
private Gene getGeneId(String[] splittedLine) {
String[] geneSplittedStr = StringUtils.split(splittedLine[3], FileUtils.SEPARATOR_DOT);
return new Gene(
Integer.valueOf(geneSplittedStr[1]),
Integer.valueOf(geneSplittedStr[2]),
StringUtils.substringBeforeLast(splittedLine[3], FileUtils.SEPARATOR_DOT));
}
private LocalTime getLocalTime(String str) {
if (str.contains(":")) {
String[] parts = StringUtils.split(str, ':');
return new LocalTime(Integer.parseInt(parts[0]), Integer.parseInt(parts[1]));
}
return new LocalTime(Integer.parseInt(str), 0);
}
@Override
public synchronized void init(XWikiContext context) {
LOGGER.debug("Lucene plugin: in init");
this.indexDirs = context.getWiki().Param(PROP_INDEX_DIR);
if (StringUtils.isEmpty(this.indexDirs)) {
File workDir = getLuceneWorkDirectory();
this.indexDirs = workDir.getAbsolutePath();
}
String indexDir = StringUtils.split(this.indexDirs, ",")[0];
File f = new File(indexDir);
Directory directory;
try {
if (!f.exists()) {
f.mkdirs();
}
directory = FSDirectory.open(f);
} catch (IOException e) {
LOGGER.error("Failed to open the index directory: ", e);
throw new RuntimeException(e);
}
init(directory, context);
}
private Range<Integer> parseDayOfMonthRange(String dayOfMonth) {
if (StringUtils.isBlank(dayOfMonth)) {
return null;
}
String dom = normalize(dayOfMonth);
String[] parts = StringUtils.split(dom, '-');
return Range.between(Integer.parseInt(parts[0]), Integer.parseInt(parts[1]));
}
private Range<Integer> parseDayOfWeekRange(String dayOfWeek) {
if (StringUtils.isBlank(dayOfWeek)) {
return null;
}
String dow = normalize(dayOfWeek);
String[] parts = StringUtils.split(dow, '-');
return Range.between(getDOW(parts[0]), getDOW(parts[1]));
}
public static String getTopLevelPath(String path) {
String segs[] = StringUtils.split(normalize(path), SEPARATOR_CHAR);
if (segs.length < 1) {
return ROOT_PATH;
} else {
return SEPARATOR + segs[0];
}
}
