/**
* Constructor.
*
* @param graph Target directed graph.
* @param thread_num number of threads to compute strong components if thread_num == 1, then it
* is a sequential execution of this algorithm, but not a serial version
*/
public ConnectedComponents(UndirectedGraph graph, ExecutorService threadPool) {
this.graph = (UndirectedGraph) graph;
this.ccs = new Vector<Collection<Node<E>>>(INIT_SIZE_FOR_CCS);
this.pool = threadPool;
this.numThread = Runtime.getRuntime().availableProcessors(); // should
// be
// better
// determined
this.numNodes = graph.size();
this.average = this.numNodes / numThread;
this.nodesArray.ensureCapacity(numNodes);
this.pvalues = new int[numNodes];
this.map = new ConcurrentHashMap<Node<E>, Integer>(numNodes);
// make it parallel
this.nodesArray.addAll(graph.getAllNodes());
}
/**
* Compute non-trivial connected components and return them.
*
* @return the result collection.
* @throws java.lang.Exception
*/
public Collection<Collection<Node<E>>> getConnectedComponents() throws Exception {
int i;
if (graph.size() < 2) return this.ccs;
// inittask1
Runnable[] tasks = new Runnable[this.numThread];
for (i = 0; i < this.numThread; i++) {
final int index = i;
tasks[i] =
new Runnable() {
public void run() {
int begin = average * index;
int end = average * (index + 1);
if (index == numThread - 1) end = numNodes;
for (int j = begin; j < end; j++) {
map.put(nodesArray.get(j), j);
pvalues[j] = j;
}
}
};
}
this.runTasks(tasks, 0, numThread);
// barrier
// inittask2
for (i = 0; i < this.numThread; i++) {
final int index = i;
tasks[i] =
new Runnable() {
public void run() {
int begin = average * index;
int end = average * (index + 1);
if (index == numThread - 1) end = numNodes;
Iterator<AdjacentNode<E>> itr;
for (int j = begin; j < end; j++) {
itr = graph.getLinkedNodes(nodesArray.get(j)).iterator();
while (itr.hasNext()) {
pvalues[j] = Math.min(pvalues[j], pvalues[map.get(itr.next().getNode())]);
}
}
}
};
}
this.runTasks(tasks, 0, this.numThread);
// barrier
// main loop
this.updates = 1; // pretend there is an update
while (this.updates != 0) {
this.updates = 0;
Callable<Integer>[] callables = new Callable[this.numThread];
for (i = 0; i < this.numThread; i++) {
final int index = i;
callables[i] =
new Callable<Integer>() {
public Integer call() {
int begin = average * index;
int end = average * (index + 1);
if (index == numThread - 1) end = numNodes;
int localUpdates = 0;
Iterator<AdjacentNode<E>> itr;
// opportunistic pointer jumping
for (int j = begin; j < end; j++) {
int minVertexValue = Integer.MAX_VALUE;
itr = graph.getLinkedNodes(nodesArray.get(j)).iterator();
while (itr.hasNext())
minVertexValue =
Math.min(minVertexValue, pvalues[map.get(itr.next().getNode())]);
if (minVertexValue < pvalues[j]) {
localUpdates++;
}
pvalues[j] = Math.min(pvalues[j], minVertexValue);
}
return localUpdates;
}
};
}
this.runTasks2(callables, 0, numThread); // also acts as an
// implicit barrier
for (i = 0; i < this.numThread; i++) {
final int index = i;
callables[i] =
new Callable<Integer>() {
public Integer call() {
int begin = average * index;
int end = average * (index + 1);
if (index == numThread - 1) end = numNodes;
int localUpdates = 0;
// normal pointer jumping
for (int j = begin; j < end; j++) {
int pvalue = pvalues[j];
if (pvalues[pvalue] < pvalue) {
localUpdates++;
} else if (pvalues[pvalue] > pvalue) throw new RuntimeException("fatal error");
pvalues[j] = pvalues[pvalue];
}
return localUpdates;
}
};
}
this.runTasks2(callables, 0, numThread); // also acts as an
// implicit barrier
// System.out.println("updates:" + this.updates);
}
this.pool.shutdown();
return this.ccs;
}
