public boolean link(Reference reference, OMEModelObject o) {
boolean wasHandledBySuperClass = super.link(reference, o);
if (wasHandledBySuperClass) {
return true;
}
LOGGER.debug("Unable to handle reference of type: {}", reference.getClass());
return false;
}
/**
* Updates FilterRef recursively from an XML DOM tree. <b>NOTE:</b> No properties are removed,
* only added or updated.
*
* @param element Root of the XML DOM tree to construct a model object graph from.
* @param model Handler for the OME model which keeps track of instances and references seen
* during object population.
* @throws EnumerationException If there is an error instantiating an enumeration during model
* object creation.
*/
public void update(Element element, OMEModel model) throws EnumerationException {
super.update(element, model);
String tagName = element.getTagName();
if (!"FilterRef".equals(tagName)) {
LOGGER.debug("Expecting node name of FilterRef got {}", tagName);
}
if (!element.hasAttribute("ID") && getID() == null) {
// TODO: Should be its own exception
throw new RuntimeException(String.format("FilterRef missing required ID property."));
}
if (element.hasAttribute("ID")) {
// ID property
setID(String.valueOf(element.getAttribute("ID")));
// Adding this model object to the model handler
model.addModelObject(getID(), this);
}
}
public boolean link(Reference reference, OMEModelObject o) {
boolean wasHandledBySuperClass = super.link(reference, o);
if (wasHandledBySuperClass) {
return true;
}
if (reference instanceof PlateRef) {
Plate o_casted = (Plate) o;
o_casted.linkScreen(this);
if (!plateLinks.contains(o_casted)) {
plateLinks.add(o_casted);
}
return true;
}
if (reference instanceof AnnotationRef) {
Annotation o_casted = (Annotation) o;
o_casted.linkScreen(this);
if (!annotationLinks.contains(o_casted)) {
annotationLinks.add(o_casted);
}
return true;
}
LOGGER.debug("Unable to handle reference of type: {}", reference.getClass());
return false;
}