/**
* NSAUTOCLOSE causes the process to end on import completion
*
* <p>NSTARGETTEMPLATE sets a target for the import <em>if none is set</em>
*/
private void detectKnownAnnotations() throws Exception {
// PythonImporter et al. may pass a null settings.
if (settings == null || settings.userSpecifiedAnnotationList == null) {
return;
}
ome.model.annotations.CommentAnnotation lastCA = null;
long maxCAId = 0;
for (Annotation a : settings.userSpecifiedAnnotationList) {
if (a == null) {
continue;
}
ome.model.annotations.Annotation ann = null;
String ns = null;
if (a.isLoaded()) {
ns = a.getNs() == null ? null : a.getNs().getValue();
ann = (ome.model.annotations.Annotation) new IceMapper().reverse(a);
} else {
if (a.getId() == null) {
// not sure what we can do with this annotation then.
continue;
}
ann =
(ome.model.annotations.Annotation)
helper
.getSession()
.get(ome.model.annotations.Annotation.class, a.getId().getValue());
ns = ann.getNs();
}
if (NSAUTOCLOSE.value.equals(ns)) {
autoClose = true;
} else if (NSTARGETTEMPLATE.value.equals(ns)) {
ome.model.annotations.CommentAnnotation ca = (ome.model.annotations.CommentAnnotation) ann;
if (ca.getId().longValue() > maxCAId) {
maxCAId = ca.getId().longValue();
lastCA = ca;
}
}
}
if (lastCA != null) {
if (settings.userSpecifiedTarget != null) {
// TODO: Exception
String kls = settings.userSpecifiedTarget.getClass().getSimpleName();
long id = settings.userSpecifiedTarget.getId().getValue();
log.error("User-specified template target '{}' AND {}:{}", lastCA.getTextValue(), kls, id);
} else {
// Path converted to unix slashes.
String path = lastCA.getDescription();
File file = new File(path);
for (int i = 0; i < location.omittedLevels; i++) {
file = file.getParentFile();
}
path = file.toString();
log.debug("Using target path {}", path);
// Here we use the client-side (but unix-separated) path, since
// for simple imports, we don't have any context about the directory
// from the client.
ServerTemplateImportTarget target = new ServerTemplateImportTarget(path);
target.init(lastCA.getTextValue());
settings.userSpecifiedTarget = target.load(store, reader.isSPWReader());
}
}
}
