@Override
public void loadValueFromXML(Element xmlElement) {
PeakList[] currentDataPeakLists =
MZmineCore.getProjectManager().getCurrentProject().getPeakLists();
PeakListsSelectionType selectionType;
final String attrValue = xmlElement.getAttribute("type");
if (Strings.isNullOrEmpty(attrValue))
selectionType = PeakListsSelectionType.GUI_SELECTED_PEAKLISTS;
else selectionType = PeakListsSelectionType.valueOf(xmlElement.getAttribute("type"));
ArrayList<Object> newValues = new ArrayList<Object>();
NodeList items = xmlElement.getElementsByTagName("specific_peak_list");
for (int i = 0; i < items.getLength(); i++) {
String itemString = items.item(i).getTextContent();
for (PeakList df : currentDataPeakLists) {
if (df.getName().equals(itemString)) newValues.add(df);
}
}
PeakList specificPeakLists[] = newValues.toArray(new PeakList[0]);
String namePattern = null;
items = xmlElement.getElementsByTagName("name_pattern");
for (int i = 0; i < items.getLength(); i++) {
namePattern = items.item(i).getTextContent();
}
this.value = new PeakListsSelection();
this.value.setSelectionType(selectionType);
this.value.setSpecificPeakLists(specificPeakLists);
this.value.setNamePattern(namePattern);
}
/** Reloads peak lists from the project to the selector combo box */
void rebuildPeakListSelector() {
logger.finest("Rebuilding the peak list selector");
PeakList selectedPeakList = (PeakList) peakListSelector.getSelectedItem();
PeakList currentPeakLists[] =
MZmineCore.getProjectManager().getCurrentProject().getPeakLists(dataFile);
peakListSelector.removeAllItems();
for (int i = currentPeakLists.length - 1; i >= 0; i--) {
peakListSelector.addItem(currentPeakLists[i]);
}
if (selectedPeakList != null) peakListSelector.setSelectedItem(selectedPeakList);
}