@Override
public boolean mouseMoved(int x, int y, MouseEvent source) {
if (model.vlm.getAnnotationLocationVisible().length()
< Configuration.getInt("geneStructureNucleotideWindow")) {
ShortReadInsertion sri = null;
for (java.util.Map.Entry<Rectangle, ShortReadInsertion> e :
render.meta().paintedBlocks.entrySet()) {
if (e.getKey().contains(x, y)) {
sri = e.getValue();
break;
}
}
if (sri != null) {
if (!tooltip.isVisible()) tooltip.setVisible(true);
tooltip.set(source, sri);
} else {
if (tooltip.isVisible()) tooltip.setVisible(false);
}
//
// System.out.println("Moved: " + x + " " + y);
for (java.util.Map.Entry<Rectangle, SAMRecord> e : render.meta().hitMap.entrySet()) {
if (e.getKey().contains(x, y)) {
// System.out.println("Prijs: " + e.getValue());
readinfo.set(source, e.getValue());
}
}
//
return false;
} else {
if (tooltip.isVisible()) tooltip.setVisible(false);
}
return false;
}
public final String shortDisplayName() {
String alias = Configuration.get("track:alias:" + dataKey);
if (alias != null && alias.length() > 0) return alias;
else {
String dn = "" + dataKey;
int sepIdx = Math.max(dn.lastIndexOf('/'), dn.lastIndexOf('\\')) + 1;
if (sepIdx < 0) sepIdx = 0;
dn = dn.substring(sepIdx);
dn = dn.replaceAll("(\\.[a-zA-Z0-9]{3})+$", "");
return dn;
}
}
protected TrackConfig(Model model, DataKey dataKey) {
this.dataKey = dataKey;
this.model = model;
guicontainer.add(
new JLabel(MessageManager.getString("trackconfig.track_key") + " \n" + dataKey),
guicontainer.gc);
guicontainer.gc.gridy++;
guicontainer.add(
new StringConfig(
"track:alias:" + dataKey, MessageManager.getString("trackconfig.track_alias"), model),
guicontainer.gc);
guicontainer.gc.gridy++;
Configuration.getVisible(dataKey);
guicontainer.add(
new BooleanConfig(
"track:visible:" + dataKey,
MessageManager.getString("trackconfig.track_visible"),
model),
guicontainer.gc);
guicontainer.gc.gridy++;
guicontainer.add(
new BooleanConfig(
"track:highlight:" + dataKey,
MessageManager.getString("trackconfig.track_highlight"),
model),
guicontainer.gc);
if (isCollapsible()) {
guicontainer.gc.gridy++;
guicontainer.add(
new BooleanConfig(
"track:collapsed:" + dataKey,
MessageManager.getString("trackconfig.track_collapsed"),
model),
guicontainer.gc);
}
}
public final String displayName() {
String alias = Configuration.get("track:alias:" + dataKey);
if (alias != null && alias.length() > 0) return alias;
else return "" + dataKey;
}
public boolean isCollapsed() {
return Configuration.getBoolean("track:collapsed:" + dataKey);
}
public void setCollapsed(boolean collapsed) {
Configuration.set("track:collapsed:" + dataKey, collapsed);
setChanged();
notifyObservers("TrackConfig::setCollapsed");
}
public void setVisible(boolean visible) {
Configuration.setVisible(dataKey, visible);
setChanged();
notifyObservers("TrackConfig::setVisible");
}
public boolean isVisible() {
return Configuration.getVisible(dataKey);
}