/** It computes the average and standard deviation of the input attributes */
private void computeStatistics() {
stdev = new double[this.getnVars()];
average = new double[this.getnVars()];
for (int i = 0; i < this.getnInputs(); i++) {
average[i] = 0;
for (int j = 0; j < X[i].length; j++) {
average[i] += X[i][j];
}
average[i] /= X[i].length;
}
average[average.length - 1] = 0;
for (int j = 0; j < outputReal.length; j++) {
average[average.length - 1] += outputReal[j];
}
average[average.length - 1] /= outputReal.length;
for (int i = 0; i < this.getnInputs(); i++) {
double sum = 0;
for (int j = 0; j < X[i].length; j++) {
sum += (X[i][j] - average[i]) * (X[i][j] - average[i]);
}
sum /= X[i].length;
stdev[i] = Math.sqrt(sum);
}
double sum = 0;
for (int j = 0; j < outputReal.length; j++) {
sum +=
(outputReal[j] - average[average.length - 1])
* (outputReal[j] - average[average.length - 1]);
}
sum /= outputReal.length;
stdev[stdev.length - 1] = Math.sqrt(sum);
}
/** Applies mutation in the new poblation */
public void mutate() {
int posiciones, i, j;
double m;
posiciones = n_genes * long_poblacion;
if (prob_mutacion > 0)
while (Mu_next < posiciones) {
/* Se determina el cromosoma y el gen que corresponden a la posicion que
se va a mutar */
i = Mu_next / n_genes;
j = Mu_next % n_genes;
/* Se efectua la mutacion sobre ese gen */
poblacion[i].mutate(j);
/* Se marca el cromosoma mutado para su posterior evaluacion */
poblacion[i].setEvaluated(false);
/* Se calcula la siguiente posicion a mutar */
if (prob_mutacion < 1) {
m = Randomize.Rand();
Mu_next += Math.ceil(Math.log(m) / Math.log(1.0 - prob_mutacion));
} else Mu_next += 1;
}
Mu_next -= posiciones;
}
/** It computes the average and standard deviation of the input attributes */
private void computeStatistics() {
stdev = new double[this.getNvariables()];
average = new double[this.getNvariables()];
for (int i = 0; i < this.getnInputs(); i++) {
average[i] = 0;
for (int j = 0; j < this.getNdatos(); j++) {
if (!this.isMissing(j, i)) {
average[i] += X[j][i];
}
}
average[i] /= this.getNdatos();
}
average[average.length - 1] = 0;
for (int j = 0; j < outputReal.length; j++) {
average[average.length - 1] += outputReal[j];
}
average[average.length - 1] /= outputReal.length;
for (int i = 0; i < this.getnInputs(); i++) {
double sum = 0;
for (int j = 0; j < this.getNdatos(); j++) {
if (!this.isMissing(j, i)) {
sum += (X[j][i] - average[i]) * (X[j][i] - average[i]);
}
}
sum /= this.getNdatos();
stdev[i] = Math.sqrt(sum);
}
double sum = 0;
for (int j = 0; j < outputReal.length; j++) {
sum +=
(outputReal[j] - average[average.length - 1])
* (outputReal[j] - average[average.length - 1]);
}
sum /= outputReal.length;
stdev[stdev.length - 1] = Math.sqrt(sum);
}
private void interpola(
double ra[],
double rb[],
int na[],
int nb[],
boolean ma[],
boolean mb[],
double resS[],
double resR[],
int resN[],
boolean resM[]) {
int i;
double diff;
double gap;
int suerte;
for (i = 0; i < ra.length; i++) {
if (ma[i] == true && mb[i] == true) {
resM[i] = true;
resS[i] = 0;
} else {
resM[i] = false;
if (entradas[i].getType() == Attribute.REAL) {
diff = rb[i] - ra[i];
gap = Randomize.Rand();
resR[i] = ra[i] + gap * diff;
resS[i] =
(ra[i] + entradas[i].getMinAttribute())
/ (entradas[i].getMaxAttribute() - entradas[i].getMinAttribute());
} else if (entradas[i].getType() == Attribute.INTEGER) {
diff = rb[i] - ra[i];
gap = Randomize.Rand();
resR[i] = Math.round(ra[i] + gap * diff);
resS[i] =
(ra[i] + entradas[i].getMinAttribute())
/ (entradas[i].getMaxAttribute() - entradas[i].getMinAttribute());
} else {
suerte = Randomize.Randint(0, 2);
if (suerte == 0) {
resN[i] = na[i];
} else {
resN[i] = nb[i];
}
resS[i] = (double) resN[i] / (double) (entradas[i].getNominalValuesList().size() - 1);
}
}
}
}
public void ejecutar() {
int i, j, l, m;
double alfai;
int nClases;
int claseObt;
boolean marcas[];
boolean notFound;
int init;
int clasSel[];
int baraje[];
int pos, tmp;
String instanciasIN[];
String instanciasOUT[];
long tiempo = System.currentTimeMillis();
/* Getting the number of differents classes */
nClases = 0;
for (i = 0; i < clasesTrain.length; i++) if (clasesTrain[i] > nClases) nClases = clasesTrain[i];
nClases++;
/* Shuffle the train set */
baraje = new int[datosTrain.length];
Randomize.setSeed(semilla);
for (i = 0; i < datosTrain.length; i++) baraje[i] = i;
for (i = 0; i < datosTrain.length; i++) {
pos = Randomize.Randint(i, datosTrain.length - 1);
tmp = baraje[i];
baraje[i] = baraje[pos];
baraje[pos] = tmp;
}
/*
* Inicialization of the flagged instaces vector for a posterior
* elimination
*/
marcas = new boolean[datosTrain.length];
for (i = 0; i < datosTrain.length; i++) marcas[i] = false;
if (datosTrain.length > 0) {
// marcas[baraje[0]] = true; //the first instance is included always
nSel = n_p;
if (nSel < nClases) nSel = nClases;
} else {
System.err.println("Input dataset is empty");
nSel = 0;
}
clasSel = new int[nClases];
System.out.print("Selecting initial neurons... ");
// at least, there must be 1 neuron of each class at the beginning
init = nClases;
for (i = 0; i < nClases && i < datosTrain.length; i++) {
pos = Randomize.Randint(0, datosTrain.length - 1);
tmp = 0;
while ((clasesTrain[pos] != i || marcas[pos]) && tmp < datosTrain.length) {
pos = (pos + 1) % datosTrain.length;
tmp++;
}
if (tmp < datosTrain.length) marcas[pos] = true;
else init--;
// clasSel[i] = i;
}
for (i = init; i < Math.min(nSel, datosTrain.length); i++) {
tmp = 0;
pos = Randomize.Randint(0, datosTrain.length - 1);
while (marcas[pos]) {
pos = (pos + 1) % datosTrain.length;
tmp++;
}
// if(i<nClases){
// notFound = true;
// do{
// for(j=i-1;j>=0 && notFound;j--){
// if(clasSel[j] == clasesTrain[pos])
// notFound = false;
// }
// if(!notFound)
// pos = Randomize.Randint (0, datosTrain.length-1);
// }while(!notFound);
// }
// clasSel[i] = clasesTrain[pos];
marcas[pos] = true;
init++;
}
nSel = init;
System.out.println("Initial neurons selected: " + nSel);
/* Building of the S set from the flags */
conjS = new double[nSel][datosTrain[0].length];
clasesS = new int[nSel];
for (m = 0, l = 0; m < datosTrain.length; m++) {
if (marcas[m]) { // the instance must be copied to the solution
for (j = 0; j < datosTrain[0].length; j++) {
conjS[l][j] = datosTrain[m][j];
}
clasesS[l] = clasesTrain[m];
l++;
}
}
alfai = alpha;
boolean change = true;
/* Body of the LVQ algorithm. */
// Train the network
for (int it = 0; it < T && change; it++) {
change = false;
alpha = alfai;
for (i = 1; i < datosTrain.length; i++) {
// search for the nearest neuron to training instance
pos = NN(nSel, conjS, datosTrain[baraje[i]]);
// nearest neuron labels correctly the class of training
// instance?
if (clasesS[pos] != clasesTrain[baraje[i]]) { // NO - repel
// the neuron
for (j = 0; j < conjS[pos].length; j++) {
conjS[pos][j] = conjS[pos][j] - alpha * (datosTrain[baraje[i]][j] - conjS[pos][j]);
}
change = true;
} else { // YES - migrate the neuron towards the input vector
for (j = 0; j < conjS[pos].length; j++) {
conjS[pos][j] = conjS[pos][j] + alpha * (datosTrain[baraje[i]][j] - conjS[pos][j]);
}
}
alpha = nu * alpha;
}
// Shuffle again the training partition
baraje = new int[datosTrain.length];
for (i = 0; i < datosTrain.length; i++) baraje[i] = i;
for (i = 0; i < datosTrain.length; i++) {
pos = Randomize.Randint(i, datosTrain.length - 1);
tmp = baraje[i];
baraje[i] = baraje[pos];
baraje[pos] = tmp;
}
}
System.out.println(
"LVQ " + relation + " " + (double) (System.currentTimeMillis() - tiempo) / 1000.0 + "s");
// Classify the train data set
instanciasIN = new String[datosReferencia.length];
instanciasOUT = new String[datosReferencia.length];
for (i = 0; i < datosReferencia.length; i++) {
/* Classify the instance selected in this iteration */
Attribute a = Attributes.getOutputAttribute(0);
int tipo = a.getType();
claseObt = KNN.evaluacionKNN2(1, conjS, clasesS, datosReferencia[i], nClases);
if (tipo != Attribute.NOMINAL) {
instanciasIN[i] = new String(String.valueOf(clasesReferencia[i]));
instanciasOUT[i] = new String(String.valueOf(claseObt));
} else {
instanciasIN[i] = new String(a.getNominalValue(clasesReferencia[i]));
instanciasOUT[i] = new String(a.getNominalValue(claseObt));
}
}
escribeSalida(
ficheroSalida[0], instanciasIN, instanciasOUT, entradas, salida, nEntradas, relation);
// Classify the test data set
normalizarTest();
instanciasIN = new String[datosTest.length];
instanciasOUT = new String[datosTest.length];
for (i = 0; i < datosTest.length; i++) {
/* Classify the instance selected in this iteration */
Attribute a = Attributes.getOutputAttribute(0);
int tipo = a.getType();
claseObt = KNN.evaluacionKNN2(1, conjS, clasesS, datosTest[i], nClases);
if (tipo != Attribute.NOMINAL) {
instanciasIN[i] = new String(String.valueOf(clasesTest[i]));
instanciasOUT[i] = new String(String.valueOf(claseObt));
} else {
instanciasIN[i] = new String(a.getNominalValue(clasesTest[i]));
instanciasOUT[i] = new String(a.getNominalValue(claseObt));
}
}
escribeSalida(
ficheroSalida[1], instanciasIN, instanciasOUT, entradas, salida, nEntradas, relation);
// Print the network to a file
printNetworkToFile(ficheroSalida[2], referencia.getHeader());
}
/**
* Computes and stores the information gain of each attribute (variable) of the dataset
*
* @param Examples Set of instances of the dataset
* @param nFile Name of the file
*/
public void GainInit(TableDat Examples, String nFile) {
int i, j, h, v;
boolean encontrado;
float info_gk, suma, suma1, suma2, p_clase, logaritmo;
int num_clase[] = new int[n_clases];
int n_vars = this.getNVars();
int MaxVal = this.getMaxVal();
float p[][] = new float[n_vars][MaxVal];
float p_cond[][][] = new float[n_clases][n_vars][MaxVal];
GI = new float[n_vars];
intervalosGI = new float[n_vars][MaxVal];
String contents;
contents = "\n--------------------------------------------\n";
contents += "| Computation of the info gain |\n";
contents += "--------------------------------------------\n";
contents += "Points for computation of the info gain:\n";
// Loads the values for "intervalosGI"
float marca, p_corte;
for (int v1 = 0; v1 < n_vars; v1++) {
if (this.getContinuous(v1) == true) {
contents += "\tVariable " + var[v1].getName() + ": ";
marca = (this.getMax(v1) - this.getMin(v1)) / ((float) (this.getNLabelVar(v1) - 1));
p_corte = this.getMin(v1) + marca / 2;
for (int et = 0; et < this.getNLabelVar(v1); et++) {
intervalosGI[v1][et] = p_corte;
contents += intervalosGI[v1][et] + " ";
p_corte += marca;
}
contents += "\n";
}
}
// Structure initialization
for (i = 0; i < n_clases; i++) num_clase[i] = 0;
for (i = 0; i < n_vars; i++)
for (j = 0; j < MaxVal; j++) {
p[i][j] = 0; // Simple probabilities matrix
for (h = 0; h < n_clases; h++) p_cond[h][i][j] = 0; // Conditional probabilities matrix
}
// Computation of the Simple and Conditional probabilities matrixs
for (i = 0; i < Examples.getNEx(); i++) {
num_clase[Examples.getClass(i)]++; // distribution by classes
for (j = 0; j < n_vars; j++) { // distribution by values
if (!this.getContinuous(j)) { // Discrete variable
if (!Examples.getLost(this, i, j)) {
// if the value is not a lost one
p[j][(int) Examples.getDat(i, j)]++;
p_cond[(int) Examples.getClass(i)][j][(int) Examples.getDat(i, j)]++;
}
} else { // Continuous variable
encontrado = false;
h = 0;
while (!encontrado && h < this.getNLabelVar(j)) {
if (Examples.getDat(i, j) <= intervalosGI[j][h]) encontrado = true;
else h++;
}
if (encontrado == true) {
p[j][h]++;
p_cond[(int) Examples.getClass(i)][j][h]++;
} else {
if (!Examples.getLost(this, i, j)) {
// Lost value
System.out.println(
"Fallo al calcular la ganancia de infor, Variable " + j + " Ejemplo " + i);
return;
}
}
}
}
}
for (h = 0; h < n_clases; h++)
for (i = 0; i < n_vars; i++) {
if (!this.getContinuous(i)) // Discrete variable
for (j = (int) this.getMin(i); j <= (int) this.getMax(i); j++)
p_cond[h][i][j] = p_cond[h][i][j] / Examples.getNEx();
else // Continuous variable
for (j = 0; j < this.getNLabelVar(i); j++)
p_cond[h][i][j] = p_cond[h][i][j] / Examples.getNEx();
}
for (i = 0; i < n_vars; i++) {
if (!this.getContinuous(i)) // Discrete variable
for (j = (int) this.getMin(i); j <= (int) this.getMax(i); j++)
p[i][j] = p[i][j] / Examples.getNEx();
else // Continuous variable
for (j = 0; j < this.getNLabelVar(i); j++) p[i][j] = p[i][j] / Examples.getNEx();
}
// Info Gk computation
suma = 0;
for (i = 0; i < n_clases; i++) {
p_clase = ((float) num_clase[i]) / Examples.getNEx();
if (p_clase > 0) {
logaritmo = (float) (Math.log((double) p_clase) / Math.log(2));
suma += p_clase * logaritmo;
}
}
info_gk = (-1) * suma;
// Information gain computation for each attibute
for (v = 0; v < n_vars; v++) {
suma = info_gk;
suma1 = 0;
if (!this.getContinuous(v)) { // Discrete Variable
for (i = (int) this.getMin(v); i <= (int) this.getMax(v); i++) {
suma2 = 0;
for (j = 0; j < n_clases; j++)
if (p_cond[j][v][i] > 0) {
logaritmo = (float) (Math.log(p_cond[j][v][i]) / Math.log(2));
suma2 += p_cond[j][v][i] * logaritmo;
}
suma1 += p[v][i] * (-1) * suma2;
}
} else { // Continuous Variable
for (i = 0; i < this.getNLabelVar(v); i++) {
suma2 = 0;
for (j = 0; j < n_clases; j++)
if (p_cond[j][v][i] > 0) {
logaritmo = (float) (Math.log(p_cond[j][v][i]) / Math.log(2));
suma2 += p_cond[j][v][i] * logaritmo;
}
suma1 += p[v][i] * (-1) * suma2;
}
}
GI[v] = suma + (-1) * suma1;
}
contents += "Information Gain of the variables:\n";
for (v = 0; v < n_vars; v++) {
if (this.getContinuous(v) == true)
contents += "\tVariable " + var[v].getName() + ": " + GI[v] + "\n";
}
if (nFile != "") Files.addToFile(nFile, contents);
}
/**
* SMOTE preprocessing procedure
*
* @param datosTrain input training dta
* @param realTrain actual training data
* @param nominalTrain nominal attribute values
* @param nulosTrain null values
* @param clasesTrain training classes
* @param datosArt synthetic instances
*/
public void SMOTE(
double datosTrain[][],
double realTrain[][],
int nominalTrain[][],
boolean nulosTrain[][],
int clasesTrain[],
double datosArt[][],
double realArt[][],
int nominalArt[][],
boolean nulosArt[][],
int clasesArt[],
int kSMOTE,
int ASMO,
double smoting,
boolean balance,
int nPos,
int posID,
int nNeg,
int negID,
boolean distanceEu) {
int i, j, l, m;
int tmp, pos;
int positives[];
int neighbors[][];
double genS[][];
double genR[][];
int genN[][];
boolean genM[][];
int clasesGen[];
int nn;
/* Localize the positive instances */
positives = new int[nPos];
for (i = 0, j = 0; i < clasesTrain.length; i++) {
if (clasesTrain[i] == posID) {
positives[j] = i;
j++;
}
}
/* Randomize the instance presentation */
for (i = 0; i < positives.length; i++) {
tmp = positives[i];
pos = Randomize.Randint(0, positives.length - 1);
positives[i] = positives[pos];
positives[pos] = tmp;
}
/* Obtain k-nearest neighbors of each positive instance */
neighbors = new int[positives.length][kSMOTE];
for (i = 0; i < positives.length; i++) {
switch (ASMO) {
case 0:
KNN.evaluacionKNN2(
kSMOTE,
datosTrain,
realTrain,
nominalTrain,
nulosTrain,
clasesTrain,
datosTrain[positives[i]],
realTrain[positives[i]],
nominalTrain[positives[i]],
nulosTrain[positives[i]],
Math.max(posID, negID) + 1,
distanceEu,
neighbors[i]);
break;
case 1:
evaluacionKNNClass(
kSMOTE,
datosTrain,
realTrain,
nominalTrain,
nulosTrain,
clasesTrain,
datosTrain[positives[i]],
realTrain[positives[i]],
nominalTrain[positives[i]],
nulosTrain[positives[i]],
Math.max(posID, negID) + 1,
distanceEu,
neighbors[i],
posID);
break;
case 2:
evaluacionKNNClass(
kSMOTE,
datosTrain,
realTrain,
nominalTrain,
nulosTrain,
clasesTrain,
datosTrain[positives[i]],
realTrain[positives[i]],
nominalTrain[positives[i]],
nulosTrain[positives[i]],
Math.max(posID, negID) + 1,
distanceEu,
neighbors[i],
negID);
break;
}
}
/* Interpolation of the minority instances */
if (balance) {
genS = new double[nNeg - nPos][datosTrain[0].length];
genR = new double[nNeg - nPos][datosTrain[0].length];
genN = new int[nNeg - nPos][datosTrain[0].length];
genM = new boolean[nNeg - nPos][datosTrain[0].length];
clasesGen = new int[nNeg - nPos];
} else {
genS = new double[(int) (nPos * smoting)][datosTrain[0].length];
genR = new double[(int) (nPos * smoting)][datosTrain[0].length];
genN = new int[(int) (nPos * smoting)][datosTrain[0].length];
genM = new boolean[(int) (nPos * smoting)][datosTrain[0].length];
clasesGen = new int[(int) (nPos * smoting)];
}
for (i = 0; i < genS.length; i++) {
clasesGen[i] = posID;
nn = Randomize.Randint(0, kSMOTE - 1);
interpola(
realTrain[positives[i % positives.length]],
realTrain[neighbors[i % positives.length][nn]],
nominalTrain[positives[i % positives.length]],
nominalTrain[neighbors[i % positives.length][nn]],
nulosTrain[positives[i % positives.length]],
nulosTrain[neighbors[i % positives.length][nn]],
genS[i],
genR[i],
genN[i],
genM[i]);
}
for (j = 0; j < datosTrain.length; j++) {
for (l = 0; l < datosTrain[0].length; l++) {
datosArt[j][l] = datosTrain[j][l];
realArt[j][l] = realTrain[j][l];
nominalArt[j][l] = nominalTrain[j][l];
nulosArt[j][l] = nulosTrain[j][l];
}
clasesArt[j] = clasesTrain[j];
}
for (m = 0; j < datosArt.length; j++, m++) {
for (l = 0; l < datosTrain[0].length; l++) {
datosArt[j][l] = genS[m][l];
realArt[j][l] = genR[m][l];
nominalArt[j][l] = genN[m][l];
nulosArt[j][l] = genM[m][l];
}
clasesArt[j] = clasesGen[m];
}
}
/** Process the training and test files provided in the parameters file to the constructor. */
public void process() {
// declarations
double[] outputs;
double[] outputs2;
Instance neighbor;
double dist, mean;
int actual;
Randomize rnd = new Randomize();
Instance ex;
gCenter kmeans = null;
int iterations = 0;
double E;
double prevE;
int totalMissing = 0;
boolean allMissing = true;
rnd.setSeed(semilla);
// PROCESS
try {
// Load in memory a dataset that contains a classification problem
IS.readSet(input_train_name, true);
int in = 0;
int out = 0;
ndatos = IS.getNumInstances();
nvariables = Attributes.getNumAttributes();
nentradas = Attributes.getInputNumAttributes();
nsalidas = Attributes.getOutputNumAttributes();
X = new String[ndatos][nvariables]; // matrix with transformed data
kmeans = new gCenter(K, ndatos, nvariables);
timesSeen = new FreqList[nvariables];
mostCommon = new String[nvariables];
// first, we choose k 'means' randomly from all
// instances
totalMissing = 0;
for (int i = 0; i < ndatos; i++) {
Instance inst = IS.getInstance(i);
if (inst.existsAnyMissingValue()) totalMissing++;
}
if (totalMissing == ndatos) allMissing = true;
else allMissing = false;
for (int numMeans = 0; numMeans < K; numMeans++) {
do {
actual = (int) (ndatos * rnd.Rand());
ex = IS.getInstance(actual);
} while (ex.existsAnyMissingValue() && !allMissing);
kmeans.copyCenter(ex, numMeans);
}
// now, iterate adjusting clusters' centers and
// instances to them
prevE = 0;
iterations = 0;
do {
for (int i = 0; i < ndatos; i++) {
Instance inst = IS.getInstance(i);
kmeans.setClusterOf(inst, i);
}
// set new centers
kmeans.recalculateCenters(IS);
// compute RMSE
E = 0;
for (int i = 0; i < ndatos; i++) {
Instance inst = IS.getInstance(i);
E += kmeans.distance(inst, kmeans.getClusterOf(i));
}
iterations++;
// System.out.println(iterations+"\t"+E);
if (Math.abs(prevE - E) == 0) iterations = maxIter;
else prevE = E;
} while (E > minError && iterations < maxIter);
for (int i = 0; i < ndatos; i++) {
Instance inst = IS.getInstance(i);
in = 0;
out = 0;
for (int j = 0; j < nvariables; j++) {
Attribute a = Attributes.getAttribute(j);
direccion = a.getDirectionAttribute();
tipo = a.getType();
if (direccion == Attribute.INPUT) {
if (tipo != Attribute.NOMINAL && !inst.getInputMissingValues(in)) {
X[i][j] = new String(String.valueOf(inst.getInputRealValues(in)));
} else {
if (!inst.getInputMissingValues(in)) X[i][j] = inst.getInputNominalValues(in);
else {
actual = kmeans.getClusterOf(i);
X[i][j] = new String(kmeans.valueAt(actual, j));
}
}
in++;
} else {
if (direccion == Attribute.OUTPUT) {
if (tipo != Attribute.NOMINAL && !inst.getOutputMissingValues(out)) {
X[i][j] = new String(String.valueOf(inst.getOutputRealValues(out)));
} else {
if (!inst.getOutputMissingValues(out)) X[i][j] = inst.getOutputNominalValues(out);
else {
actual = kmeans.getClusterOf(i);
X[i][j] = new String(kmeans.valueAt(actual, j));
}
}
out++;
}
}
}
}
} catch (Exception e) {
System.out.println("Dataset exception = " + e);
e.printStackTrace();
System.exit(-1);
}
write_results(output_train_name);
/** ************************************************************************************ */
// does a test file associated exist?
if (input_train_name.compareTo(input_test_name) != 0) {
try {
// Load in memory a dataset that contains a classification problem
IStest.readSet(input_test_name, false);
int in = 0;
int out = 0;
ndatos = IStest.getNumInstances();
nvariables = Attributes.getNumAttributes();
nentradas = Attributes.getInputNumAttributes();
nsalidas = Attributes.getOutputNumAttributes();
for (int i = 0; i < ndatos; i++) {
Instance inst = IStest.getInstance(i);
in = 0;
out = 0;
for (int j = 0; j < nvariables; j++) {
Attribute a = Attributes.getAttribute(j);
direccion = a.getDirectionAttribute();
tipo = a.getType();
if (direccion == Attribute.INPUT) {
if (tipo != Attribute.NOMINAL && !inst.getInputMissingValues(in)) {
X[i][j] = new String(String.valueOf(inst.getInputRealValues(in)));
} else {
if (!inst.getInputMissingValues(in)) X[i][j] = inst.getInputNominalValues(in);
else {
actual = kmeans.getClusterOf(i);
X[i][j] = new String(kmeans.valueAt(actual, j));
}
}
in++;
} else {
if (direccion == Attribute.OUTPUT) {
if (tipo != Attribute.NOMINAL && !inst.getOutputMissingValues(out)) {
X[i][j] = new String(String.valueOf(inst.getOutputRealValues(out)));
} else {
if (!inst.getOutputMissingValues(out)) X[i][j] = inst.getOutputNominalValues(out);
else {
actual = kmeans.getClusterOf(i);
X[i][j] = new String(kmeans.valueAt(actual, j));
}
}
out++;
}
}
}
}
} catch (Exception e) {
System.out.println("Dataset exception = " + e);
e.printStackTrace();
System.exit(-1);
}
write_results(output_test_name);
}
}
