public String getDefaultLocationDescription() {
String xChr = xContext.getChromosome().getName();
String yChr = yContext.getChromosome().getName();
if (!(xChr.toLowerCase().contains("chr"))) xChr = "chr" + xChr;
if (!(yChr.toLowerCase().contains("chr"))) yChr = "chr" + yChr;
return xChr
+ "@"
+ (long) (xContext.getBinOrigin() * currentZoom.getBinSize())
+ "_"
+ yChr
+ "@"
+ (long) (yContext.getBinOrigin() * currentZoom.getBinSize());
}
public String getLocationDescription() {
String xChr = xContext.getChromosome().getName();
String yChr = yContext.getChromosome().getName();
if (!(xChr.toLowerCase().contains("chr"))) xChr = "chr" + xChr;
if (!(yChr.toLowerCase().contains("chr"))) yChr = "chr" + yChr;
return "setlocation "
+ xChr
+ " "
+ yChr
+ " "
+ currentZoom.getUnit().toString()
+ " "
+ currentZoom.getBinSize()
+ " "
+ xContext.getBinOrigin()
+ " "
+ yContext.getBinOrigin()
+ " "
+ getScaleFactor();
}
/**
* Move by the specified delta (in bins)
*
* @param dxBins -- delta x in bins
* @param dyBins -- delta y in bins
*/
public void moveBy(double dxBins, double dyBins) {
final double newX = xContext.getBinOrigin() + dxBins;
final double newY = yContext.getBinOrigin() + dyBins;
moveTo(newX, newY);
}