public Graph copy() {
WeightedArcSet list = new WeightedArcSet();
Constructor[] cons = WeightedArc.class.getDeclaredConstructors();
for (int i = 0; i < cons.length; i++) cons[i].setAccessible(true);
ArcLabelledNodeIterator it = graph.nodeIterator();
while (it.hasNext()) {
Integer aux1 = it.nextInt();
Integer aux2 = null;
ArcLabelledNodeIterator.LabelledArcIterator suc = it.successors();
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < graph.numNodes()))
try {
if (commit++ % COMMIT_SIZE == 0) {
list.commit();
}
WeightedArc arc = (WeightedArc) cons[0].newInstance(aux2, aux1, suc.label().getFloat());
list.add(arc);
} catch (Exception ex) {
throw new Error(ex);
}
}
Graph result = new Graph(list.toArray(new WeightedArc[0]));
result.nodes.clear();
result.nodesReverse.clear();
for (Integer n : this.nodes.keySet()) {
if (commit++ % COMMIT_SIZE == 0) {
result.commit();
}
result.nodesReverse.put(this.nodes.get(n), n);
result.nodes.put(n, this.nodes.get(n));
}
return result;
}
public Graph(WeightedBVGraph graph, String[] names) {
org.apache.log4j.Logger logger =
org.apache.log4j.Logger.getLogger("it.unimi.dsi.webgraph.ImmutableGraph");
logger.setLevel(org.apache.log4j.Level.FATAL);
if (names.length != graph.numNodes())
throw new Error("Problem with the list of names for the nodes in the graph.");
try {
File auxFile = File.createTempFile("graph-maps-" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
RecordManager recMan = RecordManagerFactory.createRecordManager(auxFile.getAbsolutePath());
nodes = recMan.hashMap("nodes");
nodesReverse = recMan.hashMap("nodesReverse");
} catch (IOException ex) {
throw new Error(ex);
}
nodes.clear();
nodesReverse.clear();
Constructor[] cons = WeightedArc.class.getDeclaredConstructors();
for (int i = 0; i < cons.length; i++) cons[i].setAccessible(true);
this.graph = graph;
WeightedArcSet list = new WeightedArcSet();
ArcLabelledNodeIterator it = graph.nodeIterator();
while (it.hasNext()) {
if (commit++ % COMMIT_SIZE == 0) {
commit();
list.commit();
}
Integer aux1 = it.nextInt();
Integer aux2 = null;
ArcLabelledNodeIterator.LabelledArcIterator suc = it.successors();
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < graph.numNodes()))
try {
WeightedArc arc = (WeightedArc) cons[0].newInstance(aux2, aux1, suc.label().getFloat());
list.add(arc);
this.nodes.put(aux1, names[aux1]);
this.nodes.put(aux2, names[aux2]);
this.nodesReverse.put(names[aux1], aux1);
this.nodesReverse.put(names[aux2], aux2);
} catch (Exception ex) {
throw new Error(ex);
}
}
reverse = new WeightedBVGraph(list.toArray(new WeightedArc[0]));
numArcs = list.size();
iterator = nodeIterator();
try {
File auxFile = File.createTempFile("graph" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
String basename = auxFile.getAbsolutePath();
store(basename);
} catch (IOException ex) {
throw new Error(ex);
}
commit();
}
public static Graph merge(Graph g1, Graph g2) {
int commit = 0;
WeightedArcSet list = new WeightedArcSet();
Constructor[] cons = WeightedArc.class.getDeclaredConstructors();
for (int i = 0; i < cons.length; i++) cons[i].setAccessible(true);
ArcLabelledNodeIterator it1 = g1.graph.nodeIterator();
while (it1.hasNext()) {
Integer aux1 = it1.nextInt();
ArcLabelledNodeIterator.LabelledArcIterator suc = it1.successors();
Integer aux2 = null;
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < g1.graph.numNodes()))
try {
WeightedArc arc = (WeightedArc) cons[0].newInstance(aux1, aux2, suc.label().getFloat());
list.add(arc);
if (commit++ % COMMIT_SIZE == 0) {
list.commit();
}
} catch (Exception ex) {
throw new Error(ex);
}
}
ArcLabelledNodeIterator it2 = g2.graph.nodeIterator();
while (it2.hasNext()) {
Integer aux1 = it2.nextInt();
ArcLabelledNodeIterator.LabelledArcIterator suc = it2.successors();
Integer aux2 = null;
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < g2.graph.numNodes()))
try {
int aaux1 = aux1 + g1.numNodes();
int aaux2 = aux2 + g1.numNodes();
if (g1.nodes.get(aux1) != null && g1.nodes.get(aux1).equals(g2.nodes.get(aux1)))
aaux1 = g1.nodesReverse.get(g2.nodes.get(aux1));
if (g1.nodes.get(aux2) != null && g1.nodes.get(aux2).equals(g2.nodes.get(aux2)))
aaux2 = g1.nodesReverse.get(g2.nodes.get(aux2));
WeightedArc arc = (WeightedArc) cons[0].newInstance(aux1, aux2, suc.label().getFloat());
list.add(arc);
if (commit++ % COMMIT_SIZE == 0) {
list.commit();
}
} catch (Exception ex) {
throw new Error(ex);
}
}
Graph result = new Graph(list.toArray(new WeightedArc[0]));
result.nodes.clear();
result.nodesReverse.clear();
for (Integer n : g1.nodes.keySet()) {
result.nodesReverse.put(g1.nodes.get(n), n);
result.nodes.put(n, g1.nodes.get(n));
if (commit++ % COMMIT_SIZE == 0) {
result.commit();
}
}
for (Integer n : g2.nodes.keySet()) {
int nn = n + g1.numNodes();
if (g1.nodes.get(n) != null && g1.nodes.get(n).equals(g2.nodes.get(n)))
nn = g1.nodesReverse.get(g2.nodes.get(n));
result.nodesReverse.put(g2.nodes.get(n), nn);
result.nodes.put(nn, g2.nodes.get(n));
if (commit++ % COMMIT_SIZE == 0) {
result.commit();
}
}
result.iterator = result.nodeIterator();
return result;
}
public Graph(String file) throws IOException {
org.apache.log4j.Logger logger =
org.apache.log4j.Logger.getLogger("it.unimi.dsi.webgraph.ImmutableGraph");
logger.setLevel(org.apache.log4j.Level.FATAL);
try {
File auxFile = File.createTempFile("graph-maps-" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
RecordManager recMan = RecordManagerFactory.createRecordManager(auxFile.getAbsolutePath());
nodes = recMan.hashMap("nodes");
nodesReverse = recMan.hashMap("nodesReverse");
} catch (IOException ex) {
throw new Error(ex);
}
nodes.clear();
nodesReverse.clear();
Constructor[] cons = WeightedArc.class.getDeclaredConstructors();
for (int i = 0; i < cons.length; i++) cons[i].setAccessible(true);
String aux = null;
Float weight = (float) 1.0;
WeightedArcSet list = new WeightedArcSet();
BufferedReader br;
try {
br =
new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream(file))));
} catch (Exception ex) {
br = new BufferedReader(new FileReader(file));
}
while ((aux = br.readLine()) != null)
try {
if (commit++ % COMMIT_SIZE == 0) {
commit();
list.commit();
}
String parts[] = aux.split("\t");
String l1 = new String(parts[0]);
String l2 = new String(parts[1]);
if (!nodesReverse.containsKey(l1)) {
nodesReverse.put(l1, nodesReverse.size());
nodes.put(nodes.size(), l1);
}
if (!nodesReverse.containsKey(l2)) {
nodesReverse.put(l2, nodesReverse.size());
nodes.put(nodes.size(), l2);
}
if (parts.length == 3) weight = new Float(parts[2]);
list.add(
(WeightedArc) cons[0].newInstance(nodesReverse.get(l1), nodesReverse.get(l2), weight));
} catch (Exception ex) {
throw new Error(ex);
}
this.graph = new WeightedBVGraph(list.toArray(new WeightedArc[0]));
br.close();
list = new WeightedArcSet();
br = new BufferedReader(new FileReader(file));
while ((aux = br.readLine()) != null)
try {
if (commit++ % COMMIT_SIZE == 0) {
commit();
list.commit();
}
String parts[] = aux.split("\t");
String l1 = new String(parts[0]);
String l2 = new String(parts[1]);
if (parts.length == 3) weight = new Float(parts[2]);
list.add(
(WeightedArc) cons[0].newInstance(nodesReverse.get(l2), nodesReverse.get(l1), weight));
} catch (Exception ex) {
throw new Error(ex);
}
br.close();
this.reverse = new WeightedBVGraph(list.toArray(new WeightedArc[0]));
numArcs = list.size();
iterator = nodeIterator();
try {
File auxFile = File.createTempFile("graph" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
String basename = auxFile.getAbsolutePath();
store(basename);
} catch (IOException ex) {
throw new Error(ex);
}
commit();
}
public Graph(BVGraph graph) {
org.apache.log4j.Logger logger =
org.apache.log4j.Logger.getLogger("it.unimi.dsi.webgraph.ImmutableGraph");
logger.setLevel(org.apache.log4j.Level.FATAL);
try {
File auxFile = File.createTempFile("graph-maps-" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
RecordManager recMan = RecordManagerFactory.createRecordManager(auxFile.getAbsolutePath());
nodes = recMan.hashMap("nodes");
nodesReverse = recMan.hashMap("nodesReverse");
} catch (IOException ex) {
throw new Error(ex);
}
nodes.clear();
nodesReverse.clear();
Constructor[] cons = WeightedArc.class.getDeclaredConstructors();
for (int i = 0; i < cons.length; i++) cons[i].setAccessible(true);
Integer aux1 = null;
WeightedArcSet list = new WeightedArcSet();
it.unimi.dsi.webgraph.NodeIterator it = graph.nodeIterator();
while ((aux1 = it.nextInt()) != null) {
LazyIntIterator suc = it.successors();
Integer aux2 = null;
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < graph.numNodes()))
try {
if (commit++ % COMMIT_SIZE == 0) {
list.commit();
}
list.add((WeightedArc) cons[0].newInstance(aux1, aux2, (float) 1.0));
} catch (Exception ex) {
throw new Error(ex);
}
}
this.graph = new WeightedBVGraph(list.toArray(new WeightedArc[0]));
list = new WeightedArcSet();
it = graph.nodeIterator();
while ((aux1 = it.nextInt()) != null) {
LazyIntIterator suc = it.successors();
Integer aux2 = null;
while ((aux2 = suc.nextInt()) != null && aux2 >= 0 && (aux2 < graph.numNodes()))
try {
if (commit++ % COMMIT_SIZE == 0) {
commit();
list.commit();
}
list.add((WeightedArc) cons[0].newInstance(aux2, aux1, (float) 1.0));
this.nodes.put(aux1, "" + aux1);
this.nodes.put(aux2, "" + aux2);
this.nodesReverse.put("" + aux1, aux1);
this.nodesReverse.put("" + aux2, aux2);
} catch (Exception ex) {
throw new Error(ex);
}
}
this.reverse = new WeightedBVGraph(list.toArray(new WeightedArc[0]));
numArcs = list.size();
iterator = nodeIterator();
try {
File auxFile = File.createTempFile("graph" + System.currentTimeMillis(), "aux");
auxFile.deleteOnExit();
String basename = auxFile.getAbsolutePath();
store(basename);
} catch (IOException ex) {
throw new Error(ex);
}
commit();
}