Beispiel #1
0
 public Object getValueAt(int row, int col) {
   //            PartitionData partition = options.getPartitionDataNoSpecies().get(row);
   PartitionData partition = options.getNonTraitsDataList().get(row);
   switch (col) {
     case 0:
       return partition.getName();
     case 1:
       return partition.getFileName();
     case 2:
       return "" + partition.getTaxaCount();
     case 3:
       return "" + partition.getSiteCount(); // sequence length
     case 4:
       return partition.getDataType();
     case 5:
       //                    return partition.getPloidyType();
       //                case 6:
       return partition.getPartitionSubstitutionModel().getName();
     case 6:
       return partition.getPartitionClockModel().getName();
     case 7:
       return partition.getPartitionTreeModel().getName();
     default:
       throw new IllegalArgumentException("unknown column, " + col);
   }
 }
Beispiel #2
0
  public void unlinkTrees() { // reuse previous PartitionTreePrior
    int[] selRows = dataTable.getSelectedRows();
    for (int row : selRows) {
      PartitionData partition = options.dataPartitions.get(row);

      PartitionTreeModel model = partition.getPartitionTreeModel();
      if (!model.getName().equals(partition.getName())
          && partition.getTraitType() == null) { // not a trait
        PartitionTreeModel newTree = new PartitionTreeModel(options, partition);

        // this prevents partition not broken, and used for unsharing tree prior only,
        // because sharing uses shareSameTreePrior, unsharing uses getPartitionTreePrior
        //                newTree.setPartitionTreePrior(newPrior); // important

        partition.setPartitionTreeModel(newTree);
      }
    }

    options.linkTreePriors(frame.getCurrentPartitionTreePrior());

    modelsChanged();

    fireDataChanged();
    options.taxonSets.clear();
    options.taxonSetsMono.clear();
    repaint();
  }