public static GridCoverage2D removeNovalues(GridCoverage2D geodata) {
// need to adapt it, for now do it dirty
HashMap<String, Double> params = getRegionParamsFromGridCoverage(geodata);
int height = params.get(ROWS).intValue();
int width = params.get(COLS).intValue();
WritableRaster tmpWR = createDoubleWritableRaster(width, height, null, null, null);
WritableRandomIter tmpIter = RandomIterFactory.createWritable(tmpWR, null);
RenderedImage readRI = geodata.getRenderedImage();
RandomIter readIter = RandomIterFactory.create(readRI, null);
for (int r = 0; r < height; r++) {
for (int c = 0; c < width; c++) {
double value = readIter.getSampleDouble(c, r, 0);
if (Double.isNaN(value)
|| Float.isNaN((float) value)
|| Math.abs(value - -9999.0) < .0000001) {
tmpIter.setSample(c, r, 0, Double.NaN);
} else {
tmpIter.setSample(c, r, 0, value);
}
}
}
geodata = buildCoverage("newcoverage", tmpWR, params, geodata.getCoordinateReferenceSystem());
return geodata;
}
private void storeResult(
double[] interpolatedValues, HashMap<Integer, Coordinate> interpolatedCoordinatesMap)
throws MismatchedDimensionException, Exception {
WritableRandomIter outIter = RandomIterFactory.createWritable(outWR, null);
Set<Integer> pointsToInterpolateIdSett = interpolatedCoordinatesMap.keySet();
Iterator<Integer> idIterator = pointsToInterpolateIdSett.iterator();
int c = 0;
MathTransform transf = inInterpolationGrid.getCRSToGrid2D();
final DirectPosition gridPoint = new DirectPosition2D();
while (idIterator.hasNext()) {
int id = idIterator.next();
Coordinate coordinate = (Coordinate) interpolatedCoordinatesMap.get(id);
DirectPosition point =
new DirectPosition2D(
inInterpolationGrid.getCoordinateReferenceSystem(), coordinate.x, coordinate.y);
transf.transform(point, gridPoint);
double[] gridCoord = gridPoint.getCoordinate();
int x = (int) gridCoord[0];
int y = (int) gridCoord[1];
outIter.setSample(x, y, 0, checkResultValue(interpolatedValues[c]));
c++;
}
RegionMap regionMap = CoverageUtilities.gridGeometry2RegionParamsMap(inInterpolationGrid);
outGrid =
CoverageUtilities.buildCoverage(
"gridded", outWR, regionMap, inInterpolationGrid.getCoordinateReferenceSystem());
}
@Execute
public void process() throws Exception {
if (!concatOr(outIntensity == null, doReset)) {
return;
}
checkNull(
inVelocity,
pUpperThresVelocity,
pLowerThresVelocity, //
inWaterDepth,
pUpperThresWaterdepth,
pLowerThresWaterdepth, //
inErosionDepth,
pUpperThresErosionDepth,
pLowerThresErosionDepth, //
inDepositsThickness,
pUpperThresDepositsThickness,
pLowerThresDepositsThickness //
);
// do autoboxing only once
double maxWD = pUpperThresWaterdepth;
double minWD = pLowerThresWaterdepth;
double maxV = pUpperThresVelocity;
double minV = pLowerThresVelocity;
double maxED = pUpperThresErosionDepth;
double minED = pLowerThresErosionDepth;
double maxDT = pUpperThresDepositsThickness;
double minDT = pLowerThresDepositsThickness;
RegionMap regionMap = CoverageUtilities.getRegionParamsFromGridCoverage(inWaterDepth);
int nCols = regionMap.getCols();
int nRows = regionMap.getRows();
RandomIter waterdepthIter = CoverageUtilities.getRandomIterator(inWaterDepth);
RandomIter velocityIter = CoverageUtilities.getRandomIterator(inVelocity);
RandomIter erosiondepthIter = CoverageUtilities.getRandomIterator(inErosionDepth);
RandomIter depositThicknessIter = CoverageUtilities.getRandomIterator(inDepositsThickness);
WritableRaster outWR =
CoverageUtilities.createDoubleWritableRaster(nCols, nRows, null, null, doubleNovalue);
WritableRandomIter outIter = RandomIterFactory.createWritable(outWR, null);
pm.beginTask("Processing map...", nRows);
for (int r = 0; r < nRows; r++) {
if (isCanceled(pm)) {
return;
}
for (int c = 0; c < nCols; c++) {
double h = waterdepthIter.getSampleDouble(c, r, 0);
double v = velocityIter.getSampleDouble(c, r, 0);
double ed = erosiondepthIter.getSampleDouble(c, r, 0);
double dt = depositThicknessIter.getSampleDouble(c, r, 0);
if (isNovalue(h) && isNovalue(v) && isNovalue(ed) && isNovalue(dt)) {
continue;
} else if (!isNovalue(h) && !isNovalue(v) && !isNovalue(ed) && !isNovalue(dt)) {
double value = 0.0;
if (h > maxWD || v > maxV || dt > maxDT || ed > maxED) {
value = INTENSITY_HIGH;
} else if ((h <= maxWD && h > minWD)
|| //
(v <= maxV && v > minV)
|| //
(dt <= maxDT && dt > minDT)
|| //
(ed <= maxED && ed > minED)) {
value = INTENSITY_MEDIUM;
} else if (h <= minWD || v <= minV || dt <= minDT || ed <= minED) {
value = INTENSITY_LOW;
} else {
throw new ModelsIllegalargumentException(
"No intensity could be calculated for h = "
+ h
+ " and v = "
+ v
+ " and ed = "
+ ed
+ " and dt = "
+ dt,
this,
pm);
}
outIter.setSample(c, r, 0, value);
} else {
pm.errorMessage(
"WARNING: a cell was found in which one of velocity, water depth, erosion depth or deposit thickness are novalue, while the other not. /nThe maps should be covering the exact same cells. /nGoing on ignoring the cell: "
+ c
+ "/"
+ r);
}
}
pm.worked(1);
}
pm.done();
outIntensity =
CoverageUtilities.buildCoverage(
"intensity", outWR, regionMap, inWaterDepth.getCoordinateReferenceSystem());
}