public Tetrahedron() {
int i;
TriangleArray tetra =
new TriangleArray(
12,
TriangleArray.COORDINATES | TriangleArray.NORMALS | TriangleArray.TEXTURE_COORDINATE_2);
tetra.setCoordinates(0, verts);
for (i = 0; i < 12; i++) {
tetra.setTextureCoordinate(i, texCoord[i % 3]);
}
int face;
Vector3f normal = new Vector3f();
Vector3f v1 = new Vector3f();
Vector3f v2 = new Vector3f();
Point3f[] pts = new Point3f[3];
for (i = 0; i < 3; i++) pts[i] = new Point3f();
for (face = 0; face < 4; face++) {
tetra.getCoordinates(face * 3, pts);
v1.sub(pts[1], pts[0]);
v2.sub(pts[2], pts[0]);
normal.cross(v1, v2);
normal.normalize();
for (i = 0; i < 3; i++) {
tetra.setNormal((face * 3 + i), normal);
}
}
this.setGeometry(tetra);
this.setAppearance(new Appearance());
}
public BranchGroup addTriangle(Simplex simplex, Color3f color) {
int[] p = simplex.getPoints();
BranchGroup bgTriangle = new BranchGroup();
bgTriangle.setCapability(BranchGroup.ALLOW_DETACH);
javax.vecmath.Point3d[] coords = new javax.vecmath.Point3d[6];
TriangleArray ta = new TriangleArray(6, TriangleArray.COORDINATES | TriangleArray.COLOR_3);
Point3d p0 = (Point3d) complex.getPoints().get(simplex.getPoints()[0]);
Point3d p1 = (Point3d) complex.getPoints().get(simplex.getPoints()[1]);
Point3d p2 = (Point3d) complex.getPoints().get(simplex.getPoints()[2]);
coords[0] = new javax.vecmath.Point3d(p0.getX(), p0.getY(), p0.getZ());
coords[1] = new javax.vecmath.Point3d(p1.getX(), p1.getY(), p1.getZ());
coords[2] = new javax.vecmath.Point3d(p2.getX(), p2.getY(), p2.getZ());
coords[3] = new javax.vecmath.Point3d(p0.getX(), p0.getY(), p0.getZ());
coords[4] = new javax.vecmath.Point3d(p2.getX(), p2.getY(), p2.getZ());
coords[5] = new javax.vecmath.Point3d(p1.getX(), p1.getY(), p1.getZ());
ta.setCoordinates(0, coords);
Color3f[] colors = new Color3f[6];
for (int i = 0; i < 3; i++) colors[i] = Colors.black;
for (int i = 3; i < 6; i++) colors[i] = Colors.yellow;
ta.setColors(0, colors);
Appearance ap = new Appearance();
ap.setCapability(Appearance.ALLOW_LINE_ATTRIBUTES_READ);
ap.setCapability(Appearance.ALLOW_LINE_ATTRIBUTES_WRITE);
ap.setCapability(Appearance.ALLOW_COLORING_ATTRIBUTES_READ);
ap.setCapability(Appearance.ALLOW_COLORING_ATTRIBUTES_WRITE);
ap.setLineAttributes(new LineAttributes(2, LineAttributes.PATTERN_SOLID, false));
ap.setMaterial(new Material());
ap.setTransparencyAttributes(
new TransparencyAttributes(TransparencyAttributes.SCREEN_DOOR, 0.5f));
Shape3D shape = new Shape3D(ta, ap);
shape.setCapability(Shape3D.ALLOW_APPEARANCE_READ);
shape.setCapability(Shape3D.ALLOW_APPEARANCE_WRITE);
simplex.setTriangle(shape);
// simplex.bgTriangle = bgTriangle;
TransformGroup tgTriangle = new TransformGroup();
tgTriangle.addChild(shape);
bgTriangle.addChild(tgTriangle);
spin.addChild(bgTriangle);
return bgTriangle;
}
private Geometry Triangle3DGeometry(
Iterator<il.ac.idc.jdt.Triangle> triangles_iter, int num_of_triangles) {
_triangle_arr =
new TriangleArray(3 * num_of_triangles, TriangleArray.COORDINATES | TriangleArray.COLOR_3);
int i = 0;
while ((i < num_of_triangles) && (triangles_iter.hasNext())) {
il.ac.idc.jdt.Triangle curr_triangle = triangles_iter.next();
if ((curr_triangle.getA() != null)
&& (curr_triangle.getB() != null)
&& (curr_triangle.getC() != null)) {
_triangle_arr.setCoordinate(
3 * i,
new Point3d(
curr_triangle.getA().getX(),
curr_triangle.getA().getY(),
curr_triangle.getA().getZ()));
_triangle_arr.setCoordinate(
3 * i + 1,
new Point3d(
curr_triangle.getB().getX(),
curr_triangle.getB().getY(),
curr_triangle.getB().getZ()));
_triangle_arr.setCoordinate(
3 * i + 2,
new Point3d(
curr_triangle.getC().getX(),
curr_triangle.getC().getY(),
curr_triangle.getC().getZ()));
_triangle_arr.setColor(3 * i, get_col_by_height((int) curr_triangle.getA().getZ()));
_triangle_arr.setColor(3 * i + 1, get_col_by_height((int) curr_triangle.getB().getZ()));
_triangle_arr.setColor(3 * i + 2, get_col_by_height((int) curr_triangle.getC().getZ()));
i++;
}
}
System.out.println("DEBUG INFO successfuly displayed " + i + " Triangles");
return _triangle_arr;
}
public void createTriangles(
IfcRoot ifcRootObject, IfcModelInterface ifcModel, TransformGroup buildingTransformGroup)
throws RenderEngineException {
RenderEngineInstance instance =
ifcEngineModel.getInstanceFromExpressId(ifcRootObject.getExpressId());
RenderEngineInstanceVisualisationProperties instanceInModelling =
instance.getVisualisationProperties();
if (instanceInModelling.getPrimitiveCount() != 0) {
Appearance appearance = appearances.getAppearance(ifcRootObject);
if (appearance != null) {
Point3f[] coordinates = new Point3f[instanceInModelling.getPrimitiveCount() * 3];
Vector3f[] normals = new Vector3f[instanceInModelling.getPrimitiveCount() * 3];
for (int i = instanceInModelling.getStartIndex();
i < instanceInModelling.getPrimitiveCount() * 3 + instanceInModelling.getStartIndex();
i += 3) {
int offsetIndex = i - instanceInModelling.getStartIndex();
int i1 = geometry.getIndex(i);
int i2 = geometry.getIndex(i + 1);
int i3 = geometry.getIndex(i + 2);
coordinates[offsetIndex] =
new Point3f(
geometry.getVertex(i1 * 3),
geometry.getVertex(i1 * 3 + 1),
geometry.getVertex(i1 * 3 + 2));
coordinates[offsetIndex + 1] =
new Point3f(
geometry.getVertex(i3 * 3),
geometry.getVertex(i3 * 3 + 1),
geometry.getVertex(i3 * 3 + 2));
coordinates[offsetIndex + 2] =
new Point3f(
geometry.getVertex(i2 * 3),
geometry.getVertex(i2 * 3 + 1),
geometry.getVertex(i2 * 3 + 2));
normals[offsetIndex] =
new Vector3f(
geometry.getNormal(i1 * 3),
geometry.getNormal(i1 * 3 + 1),
geometry.getNormal(i1 * 3 + 2));
normals[offsetIndex + 1] =
new Vector3f(
geometry.getNormal(i3 * 3),
geometry.getNormal(i3 * 3 + 1),
geometry.getNormal(i3 * 3 + 2));
normals[offsetIndex + 2] =
new Vector3f(
geometry.getNormal(i2 * 3),
geometry.getNormal(i2 * 3 + 1),
geometry.getNormal(i2 * 3 + 2));
}
TriangleArray triangleArray =
new TriangleArray(
coordinates.length, GeometryArray.COORDINATES | GeometryArray.NORMALS);
triangleArray.setCoordinates(0, coordinates);
triangleArray.setNormals(0, normals);
Shape3D myShape = new Shape3D(triangleArray, appearance);
buildingTransformGroup.addChild(myShape);
myShape.setUserData(ifcRootObject);
}
}
}
public BranchGroup addTetrahedron(Simplex simplex, Color3f color) {
BranchGroup bgTetrahedron = new BranchGroup();
bgTetrahedron.setCapability(BranchGroup.ALLOW_DETACH);
javax.vecmath.Point3d[] coords = new javax.vecmath.Point3d[12];
LineArray la = new LineArray(12, LineArray.COORDINATES | LineArray.COLOR_3);
Point3d p0 = (Point3d) complex.getPoints().get(simplex.getPoints()[0]);
Point3d p1 = (Point3d) complex.getPoints().get(simplex.getPoints()[1]);
Point3d p2 = (Point3d) complex.getPoints().get(simplex.getPoints()[2]);
Point3d p3 = (Point3d) complex.getPoints().get(simplex.getPoints()[3]);
coords[0] = coords[2] = coords[4] = new javax.vecmath.Point3d(p0.getX(), p0.getY(), p0.getZ());
coords[1] = coords[6] = coords[8] = new javax.vecmath.Point3d(p1.getX(), p1.getY(), p1.getZ());
coords[3] = coords[7] = coords[10] = new javax.vecmath.Point3d(p2.getX(), p2.getY(), p2.getZ());
coords[5] = coords[9] = coords[11] = new javax.vecmath.Point3d(p3.getX(), p3.getY(), p3.getZ());
la.setCoordinates(0, coords);
Color3f[] colors = new Color3f[12];
for (int i = 0; i < 12; i++) colors[i] = Colors.black;
la.setColors(0, colors);
javax.vecmath.Point3d[] coordsTr = new javax.vecmath.Point3d[24];
TriangleArray tr = new TriangleArray(24, TriangleArray.COORDINATES | TriangleArray.COLOR_3);
coordsTr[0] =
coordsTr[3] = coordsTr[6] = new javax.vecmath.Point3d(p0.getX(), p0.getY(), p0.getZ());
coordsTr[1] =
coordsTr[4] = coordsTr[9] = new javax.vecmath.Point3d(p1.getX(), p1.getY(), p1.getZ());
coordsTr[2] =
coordsTr[7] = coordsTr[10] = new javax.vecmath.Point3d(p2.getX(), p2.getY(), p2.getZ());
coordsTr[5] =
coordsTr[8] = coordsTr[11] = new javax.vecmath.Point3d(p3.getX(), p3.getY(), p3.getZ());
coordsTr[12] =
coordsTr[15] = coordsTr[18] = new javax.vecmath.Point3d(p0.getX(), p0.getY(), p0.getZ());
coordsTr[14] =
coordsTr[17] = coordsTr[21] = new javax.vecmath.Point3d(p1.getX(), p1.getY(), p1.getZ());
coordsTr[13] =
coordsTr[20] = coordsTr[23] = new javax.vecmath.Point3d(p2.getX(), p2.getY(), p2.getZ());
coordsTr[16] =
coordsTr[19] = coordsTr[22] = new javax.vecmath.Point3d(p3.getX(), p3.getY(), p3.getZ());
tr.setCoordinates(0, coordsTr);
Color3f[] colorsTr = new Color3f[24];
for (int i = 0; i < 24; i++) colorsTr[i] = Colors.green;
tr.setColors(0, colorsTr);
Appearance ap = new Appearance();
ap.setCapability(Appearance.ALLOW_LINE_ATTRIBUTES_READ);
ap.setCapability(Appearance.ALLOW_LINE_ATTRIBUTES_WRITE);
ap.setCapability(Appearance.ALLOW_COLORING_ATTRIBUTES_READ);
ap.setCapability(Appearance.ALLOW_COLORING_ATTRIBUTES_WRITE);
// ap.setCapability(Appearance.ALLOW_MATERIAL_READ);
// ap.setCapability(Appearance.ALLOW_MATERIAL_WRITE);
ap.setLineAttributes(new LineAttributes(2, LineAttributes.PATTERN_SOLID, false));
ap.setMaterial(new Material());
// ap.setTransparencyAttributes(new
// TransparencyAttributes(TransparencyAttributes.SCREEN_DOOR, 0.5f));
// LineArray la = cell.getLineArray();
Shape3D shape = new Shape3D(la, ap);
Shape3D shapeTr = new Shape3D(tr, ap);
shape.setCapability(Shape3D.ALLOW_APPEARANCE_READ);
shape.setCapability(Shape3D.ALLOW_APPEARANCE_WRITE);
simplex.setTetrahedron(shape);
// cell.setLineArray(la);
simplex.setTriangleArray(tr);
simplex.setBgTetrahedron(bgTetrahedron);
TransformGroup tgTetrahedron = new TransformGroup();
tgTetrahedron.addChild(shape);
tgTetrahedron.addChild(shapeTr);
bgTetrahedron.addChild(tgTetrahedron);
spin.addChild(bgTetrahedron);
return bgTetrahedron;
}
/**
* Build the 3D scene on a Java3D enabled draw.
*
* @param objRot the transform object
*/
@Override
public void buildJava3DScene(TransformGroup objRot) {
if (objRot == null) return;
AtomInfo ai = AtomInfo.getInstance();
double xMin = gridProperty.getBoundingBox().getUpperLeft().getX(),
yMin = gridProperty.getBoundingBox().getUpperLeft().getY(),
zMin = gridProperty.getBoundingBox().getUpperLeft().getZ();
double f1, f2, f3;
double[] functionValues = gridProperty.getFunctionValues();
double incInX = gridProperty.getXIncrement(),
incInY = gridProperty.getYIncrement(),
incInZ = gridProperty.getZIncrement();
int pointsAlongX = gridProperty.getNoOfPointsAlongX(),
pointsAlongY = gridProperty.getNoOfPointsAlongY(),
pointsAlongZ = gridProperty.getNoOfPointsAlongZ();
int i, j, k;
Atom atom;
String symbol;
SphereTriSetGenerator stsg;
Point3DI point1, point2, point3;
int noOfAtoms = molecule.getNumberOfAtoms();
int pointsAlongSlice = pointsAlongY * pointsAlongZ;
HashMap<String, SphereTriSetGenerator> triSetTableTmp =
new HashMap<String, SphereTriSetGenerator>(5);
if (noOfAtoms > largeMoleculeSize) triSetTableTmp = triSetTable;
Matrix3D tmat = new Matrix3D();
tmat.unit();
TransformGroup surfaceScene = new TransformGroup();
for (int atomIndex = 0; atomIndex < noOfAtoms; atomIndex++) {
atom = molecule.getAtom(atomIndex);
// check to see if we are with in the bounding box?
if (!gridProperty.getBoundingBox().contains(atom.getAtomCenter())) continue;
symbol = atom.getSymbol();
if ((stsg = triSetTableTmp.get(symbol)) == null) {
stsg =
new SphereTriSetGenerator(
atom.getAtomCenter(), ai.getVdwRadius(symbol), numberOfSphereDivisions);
triSetTableTmp.put(symbol, stsg);
} // end if
// setup color
Color3f eColor = new Color3f(0.0f, 0.0f, 0.0f);
Color3f sColor = new Color3f(1.0f, 1.0f, 1.0f);
Color3f objColor = new Color3f(colorMap.getInterpolatedColor(currentFunctionValue));
Appearance app = new Appearance();
Material mm = new Material(objColor, eColor, objColor, sColor, 100.0f);
mm.setLightingEnable(true);
app.setMaterial(mm);
if (fillTransperency > 0) {
app.setTransparencyAttributes(
new TransparencyAttributes(
TransparencyAttributes.NICEST, (float) (fillTransperency / 255.0)));
} // end if
int idx = 0;
stsg.setTransform(tmat);
stsg.setCenter(atom.getAtomCenter());
ArrayList<Point3d> validPoints = new ArrayList<Point3d>();
ArrayList<Color3f> validColors = new ArrayList<Color3f>();
while (true) {
Triangle t = stsg.nextVisibleTriSet();
if (t == null) break;
// first point
point1 = t.getPoint1();
i = (int) Math.round(Math.abs((point1.getX() - xMin) / incInX));
j = (int) Math.round(Math.abs((point1.getY() - yMin) / incInY));
k = (int) Math.round(Math.abs((point1.getZ() - zMin) / incInZ));
if (i > pointsAlongX - 1) i = pointsAlongX - 1;
if (j > pointsAlongY - 1) j = pointsAlongY - 1;
if (k > pointsAlongZ - 1) k = pointsAlongZ - 1;
f1 = functionValues[(i * pointsAlongSlice) + (j * pointsAlongZ) + k];
// second point
point2 = t.getPoint2();
i = (int) Math.round(Math.abs((point2.getX() - xMin) / incInX));
j = (int) Math.round(Math.abs((point2.getY() - yMin) / incInY));
k = (int) Math.round(Math.abs((point2.getZ() - zMin) / incInZ));
if (i > pointsAlongX - 1) i = pointsAlongX - 1;
if (j > pointsAlongY - 1) j = pointsAlongY - 1;
if (k > pointsAlongZ - 1) k = pointsAlongZ - 1;
f2 = functionValues[(i * pointsAlongSlice) + (j * pointsAlongZ) + k];
// third point
point3 = t.getPoint3();
i = (int) Math.round(Math.abs((point3.getX() - xMin) / incInX));
j = (int) Math.round(Math.abs((point3.getY() - yMin) / incInY));
k = (int) Math.round(Math.abs((point3.getZ() - zMin) / incInZ));
if (i > pointsAlongX - 1) i = pointsAlongX - 1;
if (j > pointsAlongY - 1) j = pointsAlongY - 1;
if (k > pointsAlongZ - 1) k = pointsAlongZ - 1;
f3 = functionValues[(i * pointsAlongSlice) + (j * pointsAlongZ) + k];
validPoints.add(new Point3d(point1.getX(), point1.getY(), point1.getZ()));
validColors.add(new Color3f(colorMap.getInterpolatedColor(f1)));
validPoints.add(new Point3d(point2.getX(), point2.getY(), point2.getZ()));
validColors.add(new Color3f(colorMap.getInterpolatedColor(f2)));
validPoints.add(new Point3d(point3.getX(), point3.getY(), point3.getZ()));
validColors.add(new Color3f(colorMap.getInterpolatedColor(f3)));
} // end while
TriangleArray ta =
new TriangleArray(validPoints.size(), GeometryArray.COORDINATES | GeometryArray.COLOR_3);
for (idx = 0; idx < validPoints.size(); idx++) {
ta.setCoordinate(idx, validPoints.get(idx));
ta.setColor(idx, validColors.get(idx));
}
validColors = null;
validPoints = null;
GeometryInfo gi = new GeometryInfo(ta);
gi.compact();
gi.recomputeIndices();
// generate normals
NormalGenerator ng = new NormalGenerator();
ng.generateNormals(gi);
// stripify
Stripifier st = new Stripifier();
st.stripify(gi);
surfaceScene.addChild(new Shape3D(gi.getGeometryArray(), app));
} // end for
if (showBoundingBox) {
boundingBox.setTransform(transform);
boundingBox.applyTransforms();
(new ScreenCuboidJ3D(boundingBox)).buildJava3DScene(surfaceScene);
} // end if
objRot.addChild(surfaceScene);
}