/**
* Extracts the module name from the specified project. If empty then the provided default name is
* used.
*
* @param defaultName the default module name to use
* @param project the maven 2 project
* @return the module name to use
*/
private String extractModuleName(final String defaultName, final Project project) {
if (StringUtils.isBlank(project.getProjectName())) {
return defaultName;
} else {
return project.getProjectName();
}
}
private void jMenuItemLoadProjectActionPerformed(
java.awt.event.ActionEvent evt) // GEN-FIRST:event_jMenuItemLoadProjectActionPerformed
{ // GEN-HEADEREND:event_jMenuItemLoadProjectActionPerformed
JFileChooser jfc = new JFileChooser();
if (lastPath != null) {
jfc.setCurrentDirectory(lastPath);
}
int fileDialogReturnVal = jfc.showOpenDialog(this);
if (fileDialogReturnVal == JFileChooser.APPROVE_OPTION) {
try {
File inputFile = jfc.getSelectedFile();
FileInputStream fis = new FileInputStream(inputFile);
ObjectInputStream ois = new ObjectInputStream(fis);
this.theProject = (Project) ois.readObject();
this.currentResults = (LSAResults) ois.readObject();
lastPath = new File(jfc.getSelectedFile().getPath());
} catch (IOException e) {
if (this.theProject == null) {
log.log(Log.ERROR, "Failed to load project");
}
if (this.currentResults == null) {
log.log(Log.WARNING, "Failed to load results");
}
log.log(Log.WARNING, e.getMessage());
} catch (ClassNotFoundException e) {
log.log(Log.ERROR, "Class not found error, version mismatch");
}
}
if (this.theProject != null) {
jMenuItemViewDocuments.setEnabled(true);
jMenuItemSaveProject.setEnabled(true);
this.setTitle(theProject.getProjectName());
log.log(Log.INFO, "Project Loaded");
}
if (this.currentResults != null) {
log.log(Log.INFO, "Results loaded");
}
} // GEN-LAST:event_jMenuItemLoadProjectActionPerformed
private MultiLoadParameter createMultiLoadParameter(
String projectName, Project project, Sample sample, List<FileReadAttributeBean> frab)
throws Exception {
MultiLoadParameter loadParameter = new MultiLoadParameter();
boolean isSampleRegistration = false;
boolean isProjectRegistration = false;
if (this.eventName.equals(Constants.EVENT_PROJECT_REGISTRATION)
&& project.getProjectName() != null
&& !project.getProjectName().isEmpty()) {
isProjectRegistration = true;
List<Project> projectList = new ArrayList<Project>();
projectList.add(feedProjectData(project));
loadParameter.addProjects(projectList);
/*
* loads all event meta attributes from the parent
* by hkim 6/11/13
*/
List<EventMetaAttribute> emas =
this.readPersister.getEventMetaAttributes(
projectName, null); // , Constants.EVENT_PROJECT_REGISTRATION);
if (emas != null && emas.size() > 0) {
List<EventMetaAttribute> newEmas = new ArrayList<EventMetaAttribute>(emas.size());
for (EventMetaAttribute ema : emas) {
EventMetaAttribute newEma = new EventMetaAttribute();
newEma.setProjectName(project.getProjectName());
newEma.setEventName(ema.getEventName());
newEma.setEventTypeLookupId(ema.getEventTypeLookupId());
newEma.setAttributeName(ema.getAttributeName());
newEma.setNameLookupId(ema.getNameLookupId());
newEma.setActive(ema.isActive());
newEma.setRequired(ema.isRequired());
newEma.setDesc(ema.getDesc());
newEma.setDataType(ema.getDataType());
newEma.setLabel(ema.getLabel());
newEma.setOntology(ema.getOntology());
newEma.setOptions(ema.getOptions());
newEma.setSampleRequired(ema.isSampleRequired());
newEmas.add(newEma);
}
loadParameter.addEventMetaAttributes(newEmas);
} else {
throw new Exception(
String.format(
"Event Metadata has not been set up for the parent project and the '%s' event type.",
Constants.EVENT_PROJECT_REGISTRATION));
}
List<SampleMetaAttribute> smas = this.readPersister.getSampleMetaAttributes(projectId);
if (smas != null && smas.size() > 0) {
List<SampleMetaAttribute> newSmas = new ArrayList<SampleMetaAttribute>(smas.size());
for (SampleMetaAttribute sma : smas) {
SampleMetaAttribute newSma = new SampleMetaAttribute();
newSma.setProjectName(project.getProjectName());
newSma.setAttributeName(sma.getAttributeName());
newSma.setNameLookupId(sma.getNameLookupId());
newSma.setDataType(sma.getDataType());
newSma.setDesc(sma.getDesc());
newSma.setLabel(sma.getLabel());
newSma.setOntology(sma.getOntology());
newSma.setOptions(sma.getOptions());
newSma.setRequired(sma.isRequired());
newSma.setActive(sma.isActive());
newSmas.add(newSma);
}
loadParameter.addSampleMetaAttributes(newSmas);
}
List<ProjectMetaAttribute> pmas = this.readPersister.getProjectMetaAttributes(projectName);
if (pmas != null && pmas.size() > 0) {
List<ProjectMetaAttribute> newPmas = new ArrayList<ProjectMetaAttribute>(pmas.size());
for (ProjectMetaAttribute pma : pmas) {
ProjectMetaAttribute newPma = new ProjectMetaAttribute();
newPma.setProjectName(project.getProjectName());
newPma.setAttributeName(pma.getAttributeName());
newPma.setDataType(pma.getDataType());
newPma.setDesc(pma.getDesc());
newPma.setLabel(pma.getLabel());
newPma.setNameLookupId(pma.getNameLookupId());
newPma.setOntology(pma.getOntology());
newPma.setOptions(pma.getOptions());
newPma.setRequired(pma.isRequired());
newPma.setActive(pma.isActive());
newPmas.add(newPma);
}
loadParameter.addProjectMetaAttributes(newPmas);
}
} else if (this.eventName.equals(Constants.EVENT_SAMPLE_REGISTRATION)
&& sample.getSampleName() != null
&& !sample.getSampleName().isEmpty()) {
isSampleRegistration = true;
List<Sample> sampleList = new ArrayList<Sample>();
sampleList.add(feedSampleData(sample));
loadParameter.addSamples(sampleList);
}
List<FileReadAttributeBean> loadingList = null;
if (frab != null && frab.size() > 0) {
loadingList =
processFileReadBeans(
isProjectRegistration ? project.getProjectName() : projectName,
isSampleRegistration ? sample.getSampleName() : this.sampleName,
frab);
}
if (loadingList != null && loadingList.size() > 0) {
if (isProjectRegistration) {
loadParameter.addProjectRegistrations(Constants.EVENT_PROJECT_REGISTRATION, loadingList);
} else if (isSampleRegistration) {
loadParameter.addSampleRegistrations(Constants.EVENT_SAMPLE_REGISTRATION, loadingList);
} else {
loadParameter.addEvents(this.eventName, loadingList);
}
}
return loadParameter;
}