public void testOverrideMethods() throws Exception {
HashSet<String> methodsThatShouldNotBeOverridden = new HashSet<String>();
methodsThatShouldNotBeOverridden.add("reopen");
methodsThatShouldNotBeOverridden.add("doOpenIfChanged");
methodsThatShouldNotBeOverridden.add("clone");
boolean fail = false;
for (Method m : FilterIndexReader.class.getMethods()) {
int mods = m.getModifiers();
if (Modifier.isStatic(mods) || Modifier.isFinal(mods) || m.isSynthetic()) {
continue;
}
Class<?> declaringClass = m.getDeclaringClass();
String name = m.getName();
if (declaringClass != FilterIndexReader.class
&& declaringClass != Object.class
&& !methodsThatShouldNotBeOverridden.contains(name)) {
System.err.println("method is not overridden by FilterIndexReader: " + name);
fail = true;
} else if (declaringClass == FilterIndexReader.class
&& methodsThatShouldNotBeOverridden.contains(name)) {
System.err.println("method should not be overridden by FilterIndexReader: " + name);
fail = true;
}
}
assertFalse(
"FilterIndexReader overrides (or not) some problematic methods; see log above", fail);
// some more inner classes:
checkOverrideMethods(FilterIndexReader.FilterTermEnum.class);
checkOverrideMethods(FilterIndexReader.FilterTermDocs.class);
// TODO: FilterTermPositions should extend correctly, this is borken,
// but for backwards compatibility we let it be:
// checkOverrideMethods(FilterIndexReader.FilterTermPositions.class);
}
static {
// check if we have JAI and or ImageIO
// if these classes are here, then the runtine environment has
// access to JAI and the JAI ImageI/O toolbox.
boolean available = true;
try {
Class.forName("javax.media.jai.JAI");
} catch (Throwable e) {
if (LOGGER.isLoggable(Level.FINE)) LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
available = false;
}
JAIAvailable = available;
available = true;
try {
Class<?> clazz = Class.forName("com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi");
readerSpi = (ImageReaderSpi) clazz.newInstance();
Class<?> clazz1 = Class.forName("com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi");
writerSpi = (ImageWriterSpi) clazz1.newInstance();
} catch (Throwable e) {
if (LOGGER.isLoggable(Level.FINE)) LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
readerSpi = null;
writerSpi = null;
available = false;
}
TiffAvailable = available;
final HashSet<String> tempSet = new HashSet<String>(2);
tempSet.add(".tfw");
tempSet.add(".tiffw");
tempSet.add(".wld");
TIFF_WORLD_FILE_EXT = Collections.unmodifiableSet(tempSet);
}
@Override
public Iterable<SDependency> getDeclaredDependencies() {
assertCanRead();
ModuleDescriptor descriptor = getModuleDescriptor();
if (descriptor == null) {
return Collections.emptyList();
}
HashSet<SDependency> result = new HashSet<SDependency>();
final SRepository repo = getRepository();
if (repo == null) {
throw new IllegalStateException(
"It is not possible to resolve all declared dependencies with a null repository : module "
+ this);
}
// add declared dependencies
for (Dependency d : descriptor.getDependencies()) {
result.add(new SDependencyImpl(d.getModuleRef(), repo, d.getScope(), d.isReexport()));
}
// add dependencies provided by devkits as nonreexport dependencies
for (SModuleReference usedDevkit : descriptor.getUsedDevkits()) {
final SModule devkit = usedDevkit.resolve(repo);
if (DevKit.class.isInstance(devkit)) {
for (Solution solution : ((DevKit) devkit).getAllExportedSolutions()) {
result.add(
new SDependencyImpl(
solution.getModuleReference(), repo, SDependencyScope.DEFAULT, false));
}
}
}
return result;
}
private static double jaccardSimilarity(String similar1, String similar2) {
HashSet<String> h1 = new HashSet<String>();
HashSet<String> h2 = new HashSet<String>();
for (String s : similar1.split("\\s+")) {
h1.add(s);
}
for (String s : similar2.split("\\s+")) {
h2.add(s);
}
int sizeh1 = h1.size();
// Retains all elements in h3 that are contained in h2 ie intersection
h1.retainAll(h2);
// h1 now contains the intersection of h1 and h2
h2.removeAll(h1);
// h2 now contains unique elements
// Union
int union = sizeh1 + h2.size();
int intersection = h1.size();
return (double) intersection / union;
}
/**
* Get all the acceptable values for a option for a board The outcome of this method can be used
* to fill a combobox
*
* @param menu the name of a menu not the ide
* @param boardName the name of a board not the ide
* @return
*/
public String[] getMenuItemNames(String menuLabel, String boardName) {
String menuID = null;
String boardID = getBoardIDFromName(boardName);
HashSet<String> ret = new HashSet<String>();
Map<String, String> menuInfo = mArduinoSupportedBoards.get("menu");
for (Entry<String, String> e2 : menuInfo.entrySet()) {
if (e2.getValue().equals(menuLabel)) menuID = e2.getKey();
}
String SearchKey = menuID + "." + boardID + ".";
for (Entry<String, String> e2 : menuInfo.entrySet()) {
int numsubkeys = e2.getKey().split("\\.").length;
boolean startOk = e2.getKey().startsWith(SearchKey);
if ((numsubkeys == 3) && (startOk)) ret.add(e2.getValue());
}
// from Arduino IDE 1.5.4 menu is subset of the board. The previous code will not return a
// result
Map<String, String> boardInfo = mArduinoSupportedBoards.get(boardID);
if (boardInfo != null) {
SearchKey = "menu." + menuID + ".";
for (Entry<String, String> e2 : boardInfo.entrySet()) {
int numsubkeys = e2.getKey().split("\\.").length;
boolean startOk = e2.getKey().startsWith(SearchKey);
if ((numsubkeys == 3) && (startOk)) ret.add(e2.getValue());
}
}
return ret.toArray(new String[ret.size()]);
}
/**
* Creates attribute meta data that represents the attribute that will be generated for the
* provided arguments.
*
* @return the {@link AttributeMetaData} for the provided arguments
*/
public static AttributeMetaData generateAttributeMetaData(
ExampleSet exampleSet, String name, ExpressionType expressionType) {
AttributeMetaData newAttribute = null;
Attribute existingAtt = exampleSet.getAttributes().get(name);
int ontology = expressionType.getAttributeType();
if (ontology == Ontology.BINOMINAL) {
newAttribute = new AttributeMetaData(name, Ontology.BINOMINAL);
HashSet<String> values = new HashSet<>();
values.add("false");
values.add("true");
newAttribute.setValueSet(values, SetRelation.EQUAL);
} else {
newAttribute = new AttributeMetaData(name, ontology);
}
// restore role if attribute existed already
if (existingAtt != null) {
newAttribute.setRole(exampleSet.getAttributes().getRole(existingAtt).getSpecialName());
}
return newAttribute;
}
public HMM(int n, List<Pair> pairs) {
long time = System.currentTimeMillis();
this.n = n;
this.pairs = pairs;
System.out.println("Counting states");
// Find States and Labels
for (Pair pair : pairs) {
words.add(pair.word);
tags.add(pair.tag);
}
System.out.println("Finding transition probabilities");
System.out.println(pairs.size());
// Find tag transition probabilities
System.out.println("Counting ngrams");
countGrams(n, nGramCount, false);
if (n > 1) {
System.out.println("Counting n-1 grams");
countGrams(n - 1, nMinusOneGramCount, false);
}
// Find emission probabilities
System.out.println("Finding emission probabilities");
for (Pair pair : pairs) {
Util.tagWordCount(tagsMap, pair.word, pair.tag);
Util.wordTagCount(wordsMap, pair.word, pair.tag);
Util.incrementMap(wordCount, pair.word);
Util.incrementMap(tagCount, pair.tag);
}
Util.mostCommonTagMap(wordsMap, mostCommonTagMap);
mostCommonTag = Util.mostCommonTag(tagCount);
System.out.println((System.currentTimeMillis() - time) / 1000.0);
}
public static Set<String> getAlignmentSet(
String test_base, String test_foreign, EMTrainerIBM2Maps em, boolean order) {
// generate alignments in test sets
List<Instance> testData = PreProcessor.read(test_base, test_foreign);
HashSet<String> result = new HashSet<String>();
int k = 1;
for (Instance i : testData) {
int findex = 1;
for (String f : i.foreign) {
int l = i.base.size();
int m = i.foreign.size();
double tmax = em.qt(0, findex, l, m, f, EMTrainerIBM1._NULL);
int imax = 0;
int index = 1;
for (String e : i.base) {
double temp = em.qt(index, findex, l, m, f, e);
if (temp > tmax) {
tmax = temp;
imax = index;
}
index++;
}
if (order) {
result.add(k + " " + imax + " " + findex);
} else {
result.add(k + " " + findex + " " + imax);
}
findex++;
}
k++;
}
return result;
}
DefaultAsyncFile(
final VertxInternal vertx,
final String path,
String perms,
final boolean read,
final boolean write,
final boolean createNew,
final boolean flush,
final Context context)
throws Exception {
if (!read && !write) {
throw new FileSystemException("Cannot open file for neither reading nor writing");
}
this.vertx = vertx;
Path file = Paths.get(path);
HashSet<OpenOption> options = new HashSet<>();
if (read) options.add(StandardOpenOption.READ);
if (write) options.add(StandardOpenOption.WRITE);
if (createNew) options.add(StandardOpenOption.CREATE);
if (flush) options.add(StandardOpenOption.DSYNC);
if (perms != null) {
FileAttribute<?> attrs =
PosixFilePermissions.asFileAttribute(PosixFilePermissions.fromString(perms));
ch = AsynchronousFileChannel.open(file, options, vertx.getBackgroundPool(), attrs);
} else {
ch = AsynchronousFileChannel.open(file, options, vertx.getBackgroundPool());
}
this.context = context;
}
private static Set<Dependency> collectFromDependencyMonitor(
ThreadMXBean bean, Serializable locality, Map<Long, ThreadInfo> threadInfos) {
HashSet<Dependency> results = new HashSet<Dependency>();
// Convert the held resources into serializable dependencies
Set<Dependency<Serializable, Thread>> heldResources =
DependencyMonitorManager.getHeldResources();
for (Dependency<Serializable, Thread> dep : heldResources) {
Thread thread = dep.getDependsOn();
Serializable resource = dep.getDepender();
ThreadInfo info = threadInfos.get(thread.getId());
if (info == null) {
info = bean.getThreadInfo(thread.getId());
}
if (info != null) {
results.add(new Dependency(resource, new LocalThread(locality, info)));
}
}
Set<Dependency<Thread, Serializable>> blockedThreads =
DependencyMonitorManager.getBlockedThreads();
// Convert the blocked threads into serializable dependencies
for (Dependency<Thread, Serializable> dep : blockedThreads) {
Thread thread = dep.getDepender();
ThreadInfo info = threadInfos.get(thread.getId());
if (info == null) {
info = bean.getThreadInfo(thread.getId());
}
final Serializable resource = dep.getDependsOn();
results.add(new Dependency(new LocalThread(locality, info), resource));
}
return results;
}
/** Handler for the 'scoreboard teams join' command. */
protected void joinTeam(ICommandSender par1ICommandSender, String[] par2ArrayOfStr, int par3) {
Scoreboard scoreboard = this.getScoreboardFromWorldServer();
ScorePlayerTeam scoreplayerteam = scoreboard.func_96508_e(par2ArrayOfStr[par3++]);
HashSet hashset = new HashSet();
String s;
if (par1ICommandSender instanceof EntityPlayer && par3 == par2ArrayOfStr.length) {
s = getCommandSenderAsPlayer(par1ICommandSender).getEntityName();
scoreboard.addPlayerToTeam(s, scoreplayerteam);
hashset.add(s);
} else {
while (par3 < par2ArrayOfStr.length) {
s = func_96332_d(par1ICommandSender, par2ArrayOfStr[par3++]);
scoreboard.addPlayerToTeam(s, scoreplayerteam);
hashset.add(s);
}
}
if (!hashset.isEmpty()) {
notifyAdmins(
par1ICommandSender,
"commands.scoreboard.teams.join.success",
new Object[] {
Integer.valueOf(hashset.size()),
scoreplayerteam.func_96661_b(),
joinNiceString(hashset.toArray(new String[0]))
});
}
}
@SuppressWarnings({"rawtypes"})
@Test
public void testGetAttachemts() throws ParseException {
SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
// Date validAtDate = formatter.parse("8/26/2011");
Date validAtDate = new Date();
Date asOfDate = new Date();
System.out.println("TemporalReferenceGetAttachmentsTest.testGetAttachemts()");
System.out.println("--------------------------------------------------------");
portfolioBiz.setReference(true);
AttachmentSet<String> as = new AttachmentSetFactory().createAttachmentSet();
HashSet<String> set = new HashSet<String>();
set.add("a");
set.add("ab");
as.setAttachments(set);
long startTime = System.currentTimeMillis();
as.setGridPath("portfolio");
List<KeyMap> list = portfolioBiz.getAttachments(as, validAtDate.getTime());
long delta = System.currentTimeMillis() - startTime;
for (KeyMap keyMap : list) {
JsonLite jl = (JsonLite) keyMap;
System.out.println(jl.toString(2, true, false));
}
System.out.println();
System.out.println("Elapsed time (msec): " + delta);
System.out.println();
}
/**
* Add to the currentList Strings that are one character deletion away from the input string.
*
* @param word The misspelled word
* @param numSuggestions is the maximum number of suggestions to return
* @return the list of spelling suggestions
*/
@Override
public List<String> suggestions(String word, int numSuggestions) {
// initial variables
List<String> queue = new LinkedList<String>(); // String to explore
HashSet<String> visited =
new HashSet<
String>(); // to avoid exploring the same // string multiple times
List<String> retList = new LinkedList<String>(); // words to return
// insert first node
queue.add(word);
visited.add(word);
// TODO: Implement the remainder of this method, see assignment for algorithm
while ((!queue.isEmpty()) & (retList.size() != numSuggestions)) {
String current = ((LinkedList<String>) queue).removeFirst();
List<String> muta = distanceOne(current, true);
for (String m : muta) {
if (!visited.contains(m)) {
visited.add(m);
queue.add(m);
if (dict.isWord(m)) retList.add(m);
}
}
}
return retList;
}
/**
* Get all vertical and horizontal moves
*
* @param starting - starting coordinate
* @return all valid vertical and horizontal moves
*/
public HashSet<Coordinate> VHMoves(Coordinate start) {
HashSet<Coordinate> moves = new HashSet<Coordinate>();
int x = start.getXCoordinate();
int y = start.getYCoordinate();
// get north
while (y >= 0) {
moves.add(new Coordinate(start.getXCoordinate(), y));
y--;
}
x = start.getXCoordinate();
y = start.getYCoordinate();
// get south
while (y < this.y) {
moves.add(new Coordinate(start.getXCoordinate(), y));
y++;
}
x = start.getXCoordinate();
y = start.getYCoordinate();
// get east
while (x < this.x) {
moves.add(new Coordinate(x, start.getYCoordinate()));
x++;
}
x = start.getXCoordinate();
y = start.getYCoordinate();
// get west
while (x >= 0) {
moves.add(new Coordinate(x, start.getYCoordinate()));
x--;
}
moves.remove(start); // remove current location
return moves;
}
public static boolean processAddition(
final MMenu menuModel,
final ArrayList<MMenuElement> menuContributionsToRemove,
MMenuContribution menuContribution,
final HashSet<String> existingMenuIds,
HashSet<String> existingSeparatorNames) {
int idx = getIndex(menuModel, menuContribution.getPositionInParent());
if (idx == -1) {
return false;
}
for (MMenuElement item : menuContribution.getChildren()) {
if (item instanceof MMenu && existingMenuIds.contains(item.getElementId())) {
// skip this, it's already there
continue;
} else if (item instanceof MMenuSeparator
&& existingSeparatorNames.contains(item.getElementId())) {
// skip this, it's already there
continue;
}
MMenuElement copy = (MMenuElement) EcoreUtil.copy((EObject) item);
if (DEBUG) {
trace("addMenuContribution " + copy, menuModel.getWidget(), menuModel); // $NON-NLS-1$
}
menuContributionsToRemove.add(copy);
menuModel.getChildren().add(idx++, copy);
if (copy instanceof MMenu && copy.getElementId() != null) {
existingMenuIds.add(copy.getElementId());
} else if (copy instanceof MMenuSeparator && copy.getElementId() != null) {
existingSeparatorNames.add(copy.getElementId());
}
}
return true;
}
public void computeIndeterminates() {
HashMap<String, HashSet<PeptideHit>> scan2pep = new HashMap<String, HashSet<PeptideHit>>();
HashSet<PeptideHit> pepList;
for (PeptideHit p : peptideHits) {
String scan = p.getScanTuple();
if (scan2pep.containsKey(scan)) {
pepList = scan2pep.get(scan);
} else {
pepList = new HashSet<PeptideHit>();
scan2pep.put(scan, pepList);
}
pepList.add(p);
}
for (HashSet<PeptideHit> pepSet : scan2pep.values()) {
boolean indeterm = false;
if (pepSet.size() > 1) {
HashSet<String> pepSeqs = new HashSet<String>();
for (PeptideHit p : pepSet) {
pepSeqs.add(p.getSequence());
}
if (pepSeqs.size() > 1) indeterm = true;
}
for (PeptideHit p : pepSet) {
p.setIndeterminate(indeterm);
}
}
}
public ks.c bL(Parcel parcel) {
int j = com.google.android.gms.common.internal.safeparcel.a.B(parcel);
HashSet hashset = new HashSet();
int i = 0;
String s = null;
do {
if (parcel.dataPosition() < j) {
int k = com.google.android.gms.common.internal.safeparcel.a.A(parcel);
switch (com.google.android.gms.common.internal.safeparcel.a.ar(k)) {
default:
com.google.android.gms.common.internal.safeparcel.a.b(parcel, k);
break;
case 1: // '\001'
i = com.google.android.gms.common.internal.safeparcel.a.g(parcel, k);
hashset.add(Integer.valueOf(1));
break;
case 2: // '\002'
s = com.google.android.gms.common.internal.safeparcel.a.o(parcel, k);
hashset.add(Integer.valueOf(2));
break;
}
} else {
if (parcel.dataPosition() != j) {
throw new com.google.android.gms.common.internal.safeparcel.a.a(
(new StringBuilder()).append("Overread allowed size end=").append(j).toString(),
parcel);
}
return new ks.c(hashset, i, s);
}
} while (true);
}
private DefaultMutableTreeNode ProListToEquivTree(ArrayList<Protein> proList, String name) {
DefaultMutableTreeNode root, child;
int size = 0;
PeptideProteinNameSet pps = ProteinListToPPNSet(proList);
root = new DefaultMutableTreeNode(pps);
HashSet<String> usedProteins = new HashSet<String>();
for (Protein p : proList) {
if (!usedProteins.contains(p.getName())) {
if (p.getEquivalent().size() > 0) {
ArrayList<Protein> equivList = new ArrayList<Protein>();
equivList.add(p);
equivList.addAll(p.getEquivalent());
PeptideProteinNameSet ppsEquiv = ProteinListToPPNSet(equivList);
ppsEquiv.setName(p.getName() + " Group (" + equivList.size() + ")");
child = new DefaultMutableTreeNode(ppsEquiv);
size++;
for (Protein ps : equivList) {
child.add(new DefaultMutableTreeNode(ps));
usedProteins.add(ps.getName());
}
root.add(child);
} else {
root.add(new DefaultMutableTreeNode(p));
usedProteins.add(p.getName());
size++;
}
}
}
pps.setName(name + " (" + size + ")");
return root;
}
private static Set makeAtlasNames() {
HashSet var0 = new HashSet();
var0.add("/terrain.png");
var0.add("/gui/items.png");
var0.add("/ctm.png");
return var0;
}
private static HashSet<String> buildAppSignatureHashes() {
HashSet<String> set = new HashSet<String>();
set.add(FBR_HASH);
set.add(FBI_HASH);
set.add(FBL_HASH);
return set;
}
// @Override
public List<String> suggestions(String word, int numSuggestions) {
// initial variables
List<String> queue = new LinkedList<String>(); // String to explore
HashSet<String> visited = new HashSet<String>(); // to avoid exploring the same
// string multiple times
List<String> retList = new LinkedList<String>(); // words to return
// insert first node
queue.add(word);
visited.add(word);
while (queue != null && numSuggestions > 0) {
String curr = queue.remove(0);
for (String text : distanceOne(curr, true)) {
if (!visited.contains(text)) {
visited.add(text);
queue.add(text); // build the suggested list
retList.add(text);
numSuggestions--;
if (numSuggestions == 0) return retList;
}
}
}
return retList;
}
public static void validateItemLevelAquired(Item item) {
// This method should be called:
// 1) When an item gets obtained (Item.collect)
// 2) When an item gets upgraded (ScrollOfUpgrade, ScrollOfWeaponUpgrade, ShortSword,
// WandOfMagicMissile)
// 3) When an item gets identified
if (!item.levelKnown) {
return;
}
Badge badge = null;
if (!local.contains(Badge.ITEM_LEVEL_1) && item.level() >= 3) {
badge = Badge.ITEM_LEVEL_1;
local.add(badge);
}
if (!local.contains(Badge.ITEM_LEVEL_2) && item.level() >= 6) {
badge = Badge.ITEM_LEVEL_2;
local.add(badge);
}
if (!local.contains(Badge.ITEM_LEVEL_3) && item.level() >= 9) {
badge = Badge.ITEM_LEVEL_3;
local.add(badge);
}
if (!local.contains(Badge.ITEM_LEVEL_4) && item.level() >= 12) {
badge = Badge.ITEM_LEVEL_4;
local.add(badge);
}
displayBadge(badge);
}
/**
* The safest bike lane should have a safety weight no lower than the time weight of a flat
* street. This method divides the safety lengths by the length ratio of the safest street,
* ensuring this property.
*
* @param graph
*/
private void applyBikeSafetyFactor(Graph graph) {
_log.info(
GraphBuilderAnnotation.register(
graph,
Variety.GRAPHWIDE,
"Multiplying all bike safety values by " + (1 / bestBikeSafety)));
HashSet<Edge> seenEdges = new HashSet<Edge>();
for (Vertex vertex : graph.getVertices()) {
for (Edge e : vertex.getOutgoing()) {
if (!(e instanceof PlainStreetEdge)) {
continue;
}
PlainStreetEdge pse = (PlainStreetEdge) e;
if (!seenEdges.contains(e)) {
seenEdges.add(e);
pse.setBicycleSafetyEffectiveLength(
pse.getBicycleSafetyEffectiveLength() / bestBikeSafety);
}
}
for (Edge e : vertex.getIncoming()) {
if (!(e instanceof PlainStreetEdge)) {
continue;
}
PlainStreetEdge pse = (PlainStreetEdge) e;
if (!seenEdges.contains(e)) {
seenEdges.add(e);
pse.setBicycleSafetyEffectiveLength(
pse.getBicycleSafetyEffectiveLength() / bestBikeSafety);
}
}
}
}
public static void validateAllBagsBought(Item bag) {
Badge badge = null;
if (bag instanceof SeedPouch && !PixelDungeon.freeSeedPouch()) {
badge = Badge.BAG_BOUGHT_SEED_POUCH;
} else if (bag instanceof ScrollHolder && !PixelDungeon.freeScrollHolder()) {
badge = Badge.BAG_BOUGHT_SCROLL_HOLDER;
} else if (bag instanceof WandHolster && !PixelDungeon.freeWandHolster()) {
badge = Badge.BAG_BOUGHT_WAND_HOLSTER;
} else if (bag instanceof PotionBag && !PixelDungeon.freePotionBag()) {
badge = Badge.BAG_BOUGHT_POTION_BAG;
}
if (badge != null) {
local.add(badge);
if (!local.contains(Badge.ALL_BAGS_BOUGHT)
&& local.contains(Badge.BAG_BOUGHT_SCROLL_HOLDER)
&& local.contains(Badge.BAG_BOUGHT_SEED_POUCH)
&& local.contains(Badge.BAG_BOUGHT_WAND_HOLSTER)
&& local.contains(Badge.BAG_BOUGHT_POTION_BAG)) {
badge = Badge.ALL_BAGS_BOUGHT;
local.add(badge);
displayBadge(badge);
}
}
}
public int[] intersection(int[] nums1, int[] nums2) {
if (null == nums1 || null == nums2) {
return null;
}
HashSet<Integer> hash1 = new HashSet<>();
HashSet<Integer> resultHash = new HashSet<>();
for (int i = 0; i < nums1.length; i++) {
hash1.add(nums1[i]);
}
for (int i = 0; i < nums2.length; i++) {
if (hash1.contains(nums2[i])) {
resultHash.add(nums2[i]);
}
}
int size = resultHash.size();
int[] result = new int[size];
int index = 0;
for (Integer e : resultHash) {
result[index++] = e;
}
return result;
}
public static void validateVictory() {
Badge badge = Badge.VICTORY;
displayBadge(badge);
switch (Dungeon.hero.heroClass) {
case WARRIOR:
badge = Badge.VICTORY_WARRIOR;
break;
case MAGE:
badge = Badge.VICTORY_MAGE;
break;
case ROGUE:
badge = Badge.VICTORY_ROGUE;
break;
case HUNTRESS:
badge = Badge.VICTORY_HUNTRESS;
break;
}
local.add(badge);
if (!global.contains(badge)) {
global.add(badge);
saveNeeded = true;
}
if (global.contains(Badge.VICTORY_WARRIOR)
&& global.contains(Badge.VICTORY_MAGE)
&& global.contains(Badge.VICTORY_ROGUE)
&& global.contains(Badge.VICTORY_HUNTRESS)) {
badge = Badge.VICTORY_ALL_CLASSES;
displayBadge(badge);
}
}
public ArrayList<SchedulePiece> toSchedulePieces() {
if (isScheduleUpdated) {
// schedulePieces = null;
schedulePieces = new ArrayList<SchedulePiece>();
isScheduleUpdated = false;
// generate initial or additional schedule pieces
Collections.sort(scheduleRecords);
int previousTime = scheduleRecords.get(0).time;
HashSet<Integer> hset = new HashSet<Integer>();
hset.add(scheduleRecords.get(0).scIndex);
for (int index = 1; index < scheduleRecords.size(); index++) {
ScheduleRecord r = scheduleRecords.get(index);
// found the new piece?
if (r.time != previousTime) {
// finish and save the old piece
// schedulePieces.add(new SchedulePiece(r.time, (Integer[]) hset.toArray()));
schedulePieces.add(new SchedulePiece(previousTime, hset.toArray()));
previousTime = r.time;
}
if (r.isStart) hset.add(r.scIndex);
else hset.remove(r.scIndex);
}
// last piece
schedulePieces.add(new SchedulePiece(previousTime, hset.toArray()));
}
return schedulePieces;
}
static {
profs = new HashSet<String>();
profs.add("profs");
profs.add("instituteurs");
profs.add("professeurs");
profs.add("enseignants");
}
/**
* Sample and calculate the probability of hitting each type of marker (marker.class). Creates
* 'numReads' reads of size 'readLen' and count how many of them hit each marker type.
*/
CountByType randomSampling(int readLen, int numReads) {
CountByType countReads = new CountByType();
RandMarker randMarker = new RandMarker(snpEffectPredictor.getGenome());
for (int i = 0; i < numReads; i++) {
// Random read
Marker read = randMarker.rand(readLen);
// Where does it hit?
Markers regions = snpEffectPredictor.queryDeep(read);
HashSet<String> doneRegion = new HashSet<String>();
for (Marker m : regions) {
String mtype = markerTypes.getType(m);
String msubtype = markerTypes.getSubType(m);
if (!doneRegion.contains(mtype)) {
countReads.inc(mtype); // Count reads
doneRegion.add(mtype); // Do not count twice
}
if ((msubtype != null) && !doneRegion.contains(msubtype)) {
countReads.inc(msubtype); // Count reads
doneRegion.add(msubtype); // Do not count twice
}
}
}
return countReads;
}
/** Tests all expected tables were created. */
@Test
public void expectedTablesShouldBeCreated_ReturnsTrue() {
final HashSet<String> tableNameHashSet = new HashSet<>();
tableNameHashSet.add(ArticleDatabase.Tables.ARTICLES);
tableNameHashSet.add(ArticleDatabase.Tables.LINKED_ARTICLES);
tableNameHashSet.add(ArticleDatabase.Tables.REFERENCE_ARTICLES);
tableNameHashSet.add(ArticleDatabase.Tables.CATEGORIES);
tableNameHashSet.add(ArticleDatabase.Tables.PHOTOS);
tableNameHashSet.add(ArticleDatabase.Tables.VIDEOS);
cursor = db.rawQuery("SELECT name FROM sqlite_master WHERE type='table'", null);
assertTrue("Error: The database has not been created correctly", cursor.moveToFirst());
// Verify that the tables have been created
do {
tableNameHashSet.remove(cursor.getString(0));
} while (cursor.moveToNext());
assertTrue(
"Error: The database was created but it did not create all expected tables",
tableNameHashSet.isEmpty());
cursor.close();
}