private static Node deserializeNode(DataInput input) throws IOException {
int level = input.readUnsignedByte();
long value = input.readLong();
double weight = input.readDouble();
return new Node(value, level, weight);
}
void read(DataInput in) throws IOException {
setStartPc(in.readUnsignedShort());
setLength(in.readUnsignedShort());
setNameIndex(in.readUnsignedShort());
setTypeIndex(in.readUnsignedShort());
setLocal(in.readUnsignedShort());
}
@Override
public void fromData(DataInput in) throws IOException, ClassNotFoundException {
this.prId = in.readInt();
this.scope = Scope.fromOrdinal(in.readByte());
this.pAttrs = PartitionAttributesImpl.createFromData(in);
this.isDestroying = in.readBoolean();
this.isColocationComplete = in.readBoolean();
this.nodes = new VersionedArrayList();
InternalDataSerializer.invokeFromData(this.nodes, in);
this.partitionResolver = DataSerializer.readString(in);
this.colocatedWith = DataSerializer.readString(in);
this.fullPath = DataSerializer.readString(in);
this.ea = EvictionAttributesImpl.createFromData(in);
this.regionIdleTimeout = ExpirationAttributes.createFromData(in);
this.regionTimeToLive = ExpirationAttributes.createFromData(in);
this.entryIdleTimeout = ExpirationAttributes.createFromData(in);
this.entryTimeToLive = ExpirationAttributes.createFromData(in);
this.firstDataStoreCreated = in.readBoolean();
this.elderFPAs = DataSerializer.readObject(in);
if (this.elderFPAs == null) {
this.elderFPAs = new LinkedHashSet<FixedPartitionAttributesImpl>();
}
this.partitionListenerClassNames = DataSerializer.readArrayList(in);
this.gatewaySenderIds = DataSerializer.readObject(in);
if (this.gatewaySenderIds == null) {
this.gatewaySenderIds = Collections.emptySet();
}
}
public Set<String> read(DataInput s) throws IOException {
int count = s.readInt();
Set<String> result = new THashSet<String>(count);
while (count-- > 0) {
result.add(s.readUTF());
}
return result;
}
public void readFrom(DataInput in) throws Exception {
status = in.readInt();
classname = Bits.readString(in);
name = Bits.readString(in);
start_time = in.readLong();
stop_time = in.readLong();
failure_type = Bits.readString(in);
failure_msg = Bits.readString(in);
stack_trace = Bits.readString(in);
}
/**
* {@inheritDoc}
*
* @see Writable#readFields(DataInput)
*/
public void readFields(DataInput in) throws IOException {
BSONDecoder dec = new BSONDecoder();
BSONCallback cb = new BasicBSONCallback();
// Read the BSON length from the start of the record
int dataLen = in.readInt();
byte[] buf = new byte[dataLen];
in.readFully(buf);
dec.decode(buf, cb);
_doc = (BSONObject) cb.get();
log.info("Decoded a BSON Object: " + _doc);
}
@Override
public GeobufFeature deserialize(DataInput dataInput, int i) throws IOException {
int len = dataInput.readInt();
byte[] feat = new byte[len];
dataInput.readFully(feat);
Geobuf.Data data = Geobuf.Data.parseFrom(feat);
return new GeobufFeature(
data.getFeatureCollection().getFeatures(0),
data.getKeysList(),
Math.pow(10, data.getPrecision()));
}
@SuppressWarnings("unchecked")
void load(DataInput dis) throws IOException {
type = dis.readByte();
int size = dis.readInt();
list = new ArrayList<T>();
for (int i = 0; i < size; i++) {
Tag tag = Tag.newTag(type, null);
tag.load(dis);
list.add((T) tag);
}
}
public void readFrom(DataInput in) throws Exception {
type = in.readByte();
boolean isMergeView = in.readBoolean();
if (isMergeView) view = (View) Util.readStreamable(MergeView.class, in);
else view = (View) Util.readStreamable(View.class, in);
mbr = Util.readAddress(in);
mbrs = Util.readAddresses(in, ArrayList.class);
join_rsp = (JoinRsp) Util.readStreamable(JoinRsp.class, in);
my_digest = (Digest) Util.readStreamable(Digest.class, in);
merge_id = (MergeId) Util.readStreamable(MergeId.class, in);
merge_rejected = in.readBoolean();
useFlushIfPresent = in.readBoolean();
}
// Used for internal Hadoop purposes
// Describes how to read this node from across a network
public void readFields(DataInput in) throws IOException {
nodeid = in.readLong();
pageRank = in.readDouble();
long next = in.readLong();
ArrayList<Long> ins = new ArrayList<Long>();
while (next != -1) {
ins.add(next);
next = in.readLong();
}
outgoing = new long[ins.size()];
for (int i = 0; i < ins.size(); i++) {
outgoing[i] = ins.get(i);
}
}
public LocalVariableTable_attribute(ConstantPool constantPool, Visitable owner, DataInput in)
throws IOException {
super(constantPool, owner);
int byteCount = in.readInt();
Logger.getLogger(getClass()).debug("Attribute length: " + byteCount);
int localVariableTableLength = in.readUnsignedShort();
Logger.getLogger(getClass())
.debug("Reading " + localVariableTableLength + " local variable(s) ...");
for (int i = 0; i < localVariableTableLength; i++) {
Logger.getLogger(getClass()).debug("Local variable " + i + ":");
localVariables.add(new LocalVariable(this, in));
}
}
static Attribute define(ConstantPool cp, String name, int length, DataInput din)
throws IOException {
LineNumberTableAttr lineNumbers = new LineNumberTableAttr(cp);
int size = din.readUnsignedShort();
for (int i = 0; i < size; i++) {
int start_pc = din.readUnsignedShort();
int line_number = din.readUnsignedShort();
lineNumbers.addEntry(new FixedLocation(start_pc), line_number);
}
return lineNumbers;
}
public TreeRequest deserialize(DataInput dis, int version) throws IOException {
String sessId = dis.readUTF();
InetAddress endpoint = CompactEndpointSerializationHelper.deserialize(dis);
CFPair cfpair = new CFPair(dis.readUTF(), dis.readUTF());
Range<Token> range;
if (version > MessagingService.VERSION_07)
range = (Range<Token>) AbstractBounds.serializer().deserialize(dis, version);
else
range =
new Range<Token>(
StorageService.getPartitioner().getMinimumToken(),
StorageService.getPartitioner().getMinimumToken());
return new TreeRequest(sessId, endpoint, range, cfpair);
}
public void readFields(DataInput in) throws IOException {
// instance-specific
this.sampleStrs = new ArrayList<String>();
int numSamples = in.readInt();
for (int i = 0; i < numSamples; i++) {
sampleStrs.add(UTF8.readString(in).toString());
}
this.tokenClassIdentifier = in.readInt();
if (in.readBoolean()) {
this.tokenParameter = UTF8.readString(in);
} else {
this.tokenParameter = null;
}
this.schema = computeAvroSchema();
}
@Override
public void readFields(DataInput input) throws IOException {
byte[] tableNameBytes = Bytes.readByteArray(input);
PName tableName = new PNameImpl(tableNameBytes);
PTableType tableType = PTableType.values()[WritableUtils.readVInt(input)];
long sequenceNumber = WritableUtils.readVLong(input);
long timeStamp = input.readLong();
byte[] pkNameBytes = Bytes.readByteArray(input);
String pkName = pkNameBytes.length == 0 ? null : Bytes.toString(pkNameBytes);
int nColumns = WritableUtils.readVInt(input);
List<PColumn> columns = Lists.newArrayListWithExpectedSize(nColumns);
for (int i = 0; i < nColumns; i++) {
PColumn column = new PColumnImpl();
column.readFields(input);
columns.add(column);
}
Map<String, byte[][]> guidePosts = new HashMap<String, byte[][]>();
int size = WritableUtils.readVInt(input);
for (int i = 0; i < size; i++) {
String key = WritableUtils.readString(input);
int valueSize = WritableUtils.readVInt(input);
byte[][] value = new byte[valueSize][];
for (int j = 0; j < valueSize; j++) {
value[j] = Bytes.readByteArray(input);
}
guidePosts.put(key, value);
}
PTableStats stats = new PTableStatsImpl(guidePosts);
init(tableName, tableType, timeStamp, sequenceNumber, pkName, columns, stats);
}
public void readFields(DataInput in) throws IOException {
int numUnionElts = in.readInt();
this.unionTypes = new ArrayList<InferredType>();
for (int i = 0; i < numUnionElts; i++) {
unionTypes.add(InferredType.readType(in));
}
this.schema = computeAvroSchema();
}
/** Deserialize an unknown InferredType from the given input stream */
public static InferredType readType(DataInput in) throws IOException {
InferredType it = null;
byte b = in.readByte();
String name = in.readUTF();
if (b == BASE_TYPE) {
it = new BaseType(name);
} else if (b == STRUCT_TYPE) {
it = new StructType(name);
} else if (b == ARRAY_TYPE) {
it = new ArrayType(name);
} else if (b == UNION_TYPE) {
it = new UnionType(name);
} else {
throw new IOException("No type found: " + b);
}
it.readFields(in);
return it;
}
public void readFields(DataInput in) throws IOException {
isNode = in.readBoolean();
if (isNode) {
node = new PageRankNode();
node.readFields(in);
} else {
contribution = new Contribution();
contribution.readFields(in);
}
}
static Attribute define(ConstantPool cp, String name, int length, DataInput din)
throws IOException {
InnerClassesAttr innerClasses = new InnerClassesAttr(cp);
int size = din.readUnsignedShort();
for (int i = 0; i < size; i++) {
int inner_index = din.readUnsignedShort();
int outer_index = din.readUnsignedShort();
int name_index = din.readUnsignedShort();
int af = din.readUnsignedShort();
ConstantClassInfo inner;
if (inner_index == 0) {
inner = null;
} else {
inner = (ConstantClassInfo) cp.getConstant(inner_index);
}
ConstantClassInfo outer;
if (outer_index == 0) {
outer = null;
} else {
outer = (ConstantClassInfo) cp.getConstant(outer_index);
}
ConstantUTFInfo innerName;
if (name_index == 0) {
innerName = null;
} else {
innerName = (ConstantUTFInfo) cp.getConstant(name_index);
}
Info info = new Info(inner, outer, innerName, af);
innerClasses.mInnerClasses.add(info);
}
return innerClasses;
}
/**
* Reads a subpopulation in binary form, from the format generated by writeSubpopulation(...). If
* the number of individuals is not identical, the individuals array will be deleted and replaced
* with a new array, and a warning will be generated as individuals will have to be created using
* newIndividual(...) rather than readIndividual(...)
*/
public void readSubpopulation(final EvolutionState state, final DataInput dataInput)
throws IOException {
int numIndividuals = dataInput.readInt();
if (numIndividuals != individuals.length) {
state.output.warnOnce(
"On reading subpopulation from binary stream, the subpopulation size was incorrect.\n"
+ "Had to resize and use newIndividual() instead of readIndividual().");
individuals = new Individual[numIndividuals];
for (int i = 0; i < individuals.length; i++)
individuals[i] = species.newIndividual(state, dataInput);
} else
for (int i = 0; i < individuals.length; i++) individuals[i].readIndividual(state, dataInput);
}
public void readFrom(DataInput in) throws Exception {
type = Type.values()[in.readByte()];
// We can't use Util.readObject since it's size is limited to 2^15-1
try {
short first = in.readShort();
if (first == -1) {
object = Util.readGenericStreamable(in);
} else {
ByteBuffer bb = ByteBuffer.allocate(4);
bb.putShort(first);
bb.putShort(in.readShort());
int size = bb.getInt(0);
byte[] bytes = new byte[size];
in.readFully(bytes, 0, size);
object = Util.objectFromByteBuffer(bytes);
}
} catch (IOException e) {
throw e;
} catch (Exception e) {
throw new IOException("Exception encountered while serializing execution request", e);
}
request = in.readLong();
}
public static QuantileDigest deserialize(DataInput input) {
try {
double maxError = input.readDouble();
double alpha = input.readDouble();
QuantileDigest result = new QuantileDigest(maxError, alpha);
result.landmarkInSeconds = input.readLong();
result.min = input.readLong();
result.max = input.readLong();
result.totalNodeCount = input.readInt();
Deque<Node> stack = new ArrayDeque<>();
for (int i = 0; i < result.totalNodeCount; i++) {
int flags = input.readByte();
Node node = deserializeNode(input);
if ((flags & Flags.HAS_RIGHT) != 0) {
node.right = stack.pop();
}
if ((flags & Flags.HAS_LEFT) != 0) {
node.left = stack.pop();
}
stack.push(node);
result.weightedCount += node.weightedCount;
if (node.weightedCount >= ZERO_WEIGHT_THRESHOLD) {
result.nonZeroNodeCount++;
}
}
if (!stack.isEmpty()) {
Preconditions.checkArgument(
stack.size() == 1, "Tree is corrupted. Expected a single root node");
result.root = stack.pop();
}
return result;
} catch (IOException e) {
throw Throwables.propagate(e);
}
}
public void readFrom(DataInput in) throws Exception {
type = in.readByte();
short len = in.readShort();
version = new byte[len];
in.readFully(version);
}
public void readFields(DataInput in) throws IOException {
super.readFields(in);
score = in.readFloat();
}
@Override
public void readFrom(DataInput in) throws Exception {
super.readFrom(in);
threadId = in.readLong();
}
public void readGenotype(final EvolutionState state, final DataInput dataInput)
throws IOException {
int len = dataInput.readInt();
if (genome == null || genome.length != len) genome = new boolean[len];
for (int x = 0; x < genome.length; x++) genome[x] = dataInput.readBoolean();
}
/** Read a {@link Writable}, {@link String}, primitive type, or an array of the preceding. */
@SuppressWarnings("unchecked")
public static Object readObject(DataInput in, ObjectWritable objectWritable, Configuration conf)
throws IOException {
String className = UTF8.readString(in);
Class<?> declaredClass = PRIMITIVE_NAMES.get(className);
if (declaredClass == null) {
declaredClass = loadClass(conf, className);
}
Object instance;
if (declaredClass.isPrimitive()) { // primitive types
if (declaredClass == Boolean.TYPE) { // boolean
instance = Boolean.valueOf(in.readBoolean());
} else if (declaredClass == Character.TYPE) { // char
instance = Character.valueOf(in.readChar());
} else if (declaredClass == Byte.TYPE) { // byte
instance = Byte.valueOf(in.readByte());
} else if (declaredClass == Short.TYPE) { // short
instance = Short.valueOf(in.readShort());
} else if (declaredClass == Integer.TYPE) { // int
instance = Integer.valueOf(in.readInt());
} else if (declaredClass == Long.TYPE) { // long
instance = Long.valueOf(in.readLong());
} else if (declaredClass == Float.TYPE) { // float
instance = Float.valueOf(in.readFloat());
} else if (declaredClass == Double.TYPE) { // double
instance = Double.valueOf(in.readDouble());
} else if (declaredClass == Void.TYPE) { // void
instance = null;
} else {
throw new IllegalArgumentException("Not a primitive: " + declaredClass);
}
} else if (declaredClass.isArray()) { // array
int length = in.readInt();
instance = Array.newInstance(declaredClass.getComponentType(), length);
for (int i = 0; i < length; i++) {
Array.set(instance, i, readObject(in, conf));
}
} else if (declaredClass == String.class) { // String
instance = UTF8.readString(in);
} else if (declaredClass.isEnum()) { // enum
instance = Enum.valueOf((Class<? extends Enum>) declaredClass, UTF8.readString(in));
} else { // Writable
Class instanceClass = null;
String str = UTF8.readString(in);
instanceClass = loadClass(conf, str);
Writable writable = WritableFactories.newInstance(instanceClass, conf);
writable.readFields(in);
instance = writable;
if (instanceClass == NullInstance.class) { // null
declaredClass = ((NullInstance) instance).declaredClass;
instance = null;
}
}
if (objectWritable != null) { // store values
objectWritable.declaredClass = declaredClass;
objectWritable.instance = instance;
}
return instance;
}