public void save(File f) throws IOException {
PrintStream ps = new PrintStream(new FileOutputStream(f));
String[] genes = genes();
Vector<Map<String, Double>> maps = new Vector<Map<String, Double>>();
for (int j = 0; j < coefs.size(); j++) {
maps.add(coefs.get(j).geneValues(args.compare));
}
ps.print("gene");
for (int i = 0; i < coefs.size(); i++) {
ps.print(" " + keys.get(i));
}
ps.println();
for (int i = 0; i < genes.length; i++) {
ps.print(String.format("%s", genes[i]));
for (int j = 0; j < coefs.size(); j++) {
Map<String, Double> map = maps.get(j);
Double value = map.containsKey(genes[i]) ? map.get(genes[i]) : null;
ps.print(String.format(" %s", value != null ? String.format("%.2f", value) : "N/A"));
}
ps.println();
}
ps.println();
ps.close();
}
private void saveSqlScript(String fileName, String[] sql) throws FileNotFoundException {
FileOutputStream fileOutputStream = new FileOutputStream(fileName);
PrintStream printStream = new PrintStream(fileOutputStream);
for (int i = 0; i < sql.length; i++) {
printStream.println(sql[i] + getSqlDelimiter());
}
}
public static void println(double[] p, PrintStream ps) {
for (int i = 0; i < p.length; i++) {
ps.print(i > 0 ? " " : "");
ps.print(String.format("%.2f", p[i]));
}
ps.println();
}
public static synchronized void printDebugMsg(PrintStream out) {
if (DEBUG == false) {
return;
}
StringBuffer msg = new StringBuffer();
msg.append("debug message in " + SimpleConnectionPool.class.getName());
msg.append("\r\n");
msg.append("total count is connection pool: " + getConnectionCount());
msg.append("\r\n");
msg.append("not used connection count: " + getNotUsedConnectionCount());
msg.append("\r\n");
msg.append("used connection, count: " + getUsedConnectionCount());
out.println(msg);
Iterator iterator = m_usedUsedConnection.iterator();
while (iterator.hasNext()) {
ConnectionWrapper wrapper = (ConnectionWrapper) iterator.next();
wrapper.debugInfo.printStackTrace(out);
}
out.println();
}
/**
* ** Prints all the default values from <code>RTKey</code> and {@link RTConfig} ** to the
* specified <code>PrintStream</code>. Used for debugging/testing ** @param out The <code>
* PrintStream</code>
*/
public static void printDefaults(PrintStream out) {
/* print standard runtime entries */
Set<String> keyList = new OrderedSet<String>();
String keyGrp = null;
for (Iterator<Entry> v = RTKey.getRuntimeEntryMap().values().iterator(); v.hasNext(); ) {
Entry rtk = v.next();
if (rtk.isHelp()) {
out.println("");
out.println("# ===== " + rtk.getHelp());
} else {
Object dft = rtk.getDefault();
out.println("# --- " + rtk.getHelp());
out.println("# " + rtk.toString(dft));
String key = rtk.getKey();
keyList.add(key);
if (!key.equals(CONFIG_FILE) && RTConfig.hasProperty(key)) {
String val = RTConfig.getString(key, null);
// if ((val != null) && ((dft == null) || !val.equals(dft.toString()))) {
out.println(rtk.toString(val));
// }
}
}
}
/* orphaned entries */
RTProperties cmdLineProps = RTConfig.getConfigFileProperties();
if (cmdLineProps != null) {
boolean orphanHeader = false;
for (Iterator i = cmdLineProps.keyIterator(); i.hasNext(); ) {
Object k = i.next();
if (!k.equals(COMMAND_LINE_CONF) && !keyList.contains(k)) {
if (!orphanHeader) {
out.println("");
out.println("# ===== Other entries");
orphanHeader = true;
}
Object v = cmdLineProps.getProperty(k, null);
out.println(k + "=" + ((v != null) ? v : NULL_VALUE));
}
}
}
/* final blank line */
out.println("");
}
