/**
* Looks for the parameter table which matches the center, subcenter and table version from the
* tables array. If this is the first time asking for this table, then the parameters for this
* table have not been read in yet, so this is done as well.
*
* @param center - integer from PDS octet 5, representing Center.
* @param subcenter - integer from PDS octet 26, representing Subcenter
* @param tableVersion - integer from PDS octet 4, representing Parameter Table Version
* @return GribPDSParamTable matching center, subcenter, and number
* @throws NotSupportedException no table found
*/
public static GribPDSParamTable getParameterTable(int center, int subcenter, int tableVersion)
throws NotSupportedException {
String key = center + "_" + subcenter + "_" + tableVersion;
if (center == -1) { // non existent table
logger.error("GribPDSParamTable: non existent table for center, subcenter, table = " + key);
return null;
}
GribPDSParamTable table = tableMap.get(key);
if (table != null) return table;
table = readParameterTable(center, subcenter, tableVersion, true);
if (table == null) {
logger.error("GribPDSParamTable: cannot find table for center, subcenter, table " + key);
throw new NotSupportedException(
"Could not find a table entry for GRIB file with center: "
+ center
+ " subCenter: "
+ subcenter
+ " number: "
+ tableVersion);
}
tableMap.put(key, table);
return table;
}
/**
* Method to get a resource. href:
* http://howtodoinjava.com/spring/spring-core/how-to-load-external-resources-files-into-spring-context/
*
* @param fileNameOrUri the {@link Object} to convert to {@link Resource} must be a {@link
* File},{@link URI},{@link URL},{@link Path},{@link String},{@link InputStream}
* @param clazz the {@link Class} for reference to the resource folder.
* @param classLoader the {@link ClassLoader} for load the resources.
* @return the {@link Resource}.
*/
private static Resource getResourceSpringAsResource(
Object fileNameOrUri, @Nullable Class<?> clazz, @Nullable ClassLoader classLoader) {
try {
Resource yourfile;
// if File
if (fileNameOrUri instanceof File && ((File) fileNameOrUri).exists()) {
yourfile = new org.springframework.core.io.FileSystemResource(((File) fileNameOrUri));
}
// if URL
else if (org.springframework.util.ResourceUtils.isUrl(String.valueOf(fileNameOrUri))
|| fileNameOrUri instanceof URL) {
if (fileNameOrUri instanceof URL) {
yourfile = new org.springframework.core.io.UrlResource((URL) fileNameOrUri);
} else {
yourfile = new org.springframework.core.io.UrlResource(String.valueOf(fileNameOrUri));
}
// if Path or URI
} else if (fileNameOrUri instanceof Path || fileNameOrUri instanceof URI) {
if (fileNameOrUri instanceof Path && Files.exists((Path) fileNameOrUri)) {
yourfile = new org.springframework.core.io.PathResource((Path) fileNameOrUri);
} else {
yourfile = new org.springframework.core.io.PathResource((URI) fileNameOrUri);
}
/* }else if(fileNameOrUri instanceof Class){
org.springframework.core.io.ClassRelativeResourceLoader relativeResourceLoader =
new org.springframework.core.io.ClassRelativeResourceLoader((Class<?>) fileNameOrUri);
yourfile = relativeResourceLoader.getResource("")
*/
// if InputStream
} else if (fileNameOrUri instanceof InputStream) {
yourfile = new org.springframework.core.io.InputStreamResource((InputStream) fileNameOrUri);
} else if (fileNameOrUri instanceof byte[]) {
yourfile = new org.springframework.core.io.ByteArrayResource((byte[]) fileNameOrUri);
// if String path toa file or String of a URI
} else if (fileNameOrUri instanceof String) {
if (classLoader != null) {
yourfile =
new org.springframework.core.io.ClassPathResource(
String.valueOf(fileNameOrUri), classLoader);
} else if (clazz != null) {
yourfile =
new org.springframework.core.io.ClassPathResource(
String.valueOf(fileNameOrUri), clazz);
} else {
yourfile =
new org.springframework.core.io.ClassPathResource(String.valueOf(fileNameOrUri));
}
} else {
logger.error(
"Can't load the resource for the Object with Class:"
+ fileNameOrUri.getClass().getName());
return null;
}
return yourfile;
} catch (IOException e) {
logger.error(e.getMessage(), e);
return null;
}
}
public boolean load(String abspath) {
abspath = abspath.replace('\\', '/');
File rcFile = new File(abspath);
if (!rcFile.exists() || !rcFile.canRead()) {
return false;
}
if (showlog) log.debug("Loading rc file: " + abspath);
try (BufferedReader rdr =
new BufferedReader(new InputStreamReader(new FileInputStream(rcFile), CDM.UTF8))) {
for (int lineno = 1; ; lineno++) {
URL url = null;
String line = rdr.readLine();
if (line == null) break;
// trim leading blanks
line = line.trim();
if (line.length() == 0) continue; // empty line
if (line.charAt(0) == '#') continue; // check for comment
// parse the line
if (line.charAt(0) == LTAG) {
int rindex = line.indexOf(RTAG);
if (rindex < 0) return false;
if (showlog) log.error("Malformed [url] at " + abspath + "." + lineno);
String surl = line.substring(1, rindex);
try {
url = new URL(surl);
} catch (MalformedURLException mue) {
if (showlog) log.error("Malformed [url] at " + abspath + "." + lineno);
}
line = line.substring(rindex + 1);
// trim again
line = line.trim();
}
// Get the key,value part
String[] pieces = line.split("\\s*=\\s*");
assert (pieces.length == 1 || pieces.length == 2);
// Create the triple
String value = "1";
if (pieces.length == 2) value = pieces[1].trim();
Triple triple = new Triple(pieces[0].trim(), value, url);
List<Triple> list = triplestore.get(triple.key);
if (list == null) list = new ArrayList<Triple>();
Triple prev = addtriple(list, triple);
triplestore.put(triple.key, list);
}
} catch (FileNotFoundException fe) {
if (showlog) log.debug("Loading rc file: " + abspath);
return false;
} catch (IOException ioe) {
if (showlog) log.error("File " + abspath + ": IO exception: " + ioe.getMessage());
return false;
}
return true;
}
/**
* Utility to save the string content to a file
*
* @param filename String
* @param content
*/
public static void saveFileContent(String filename, String content) {
try (OutputStreamWriter w =
new OutputStreamWriter(new FileOutputStream(filename), "ISO-8859-1")) {
w.write(content);
w.flush();
} catch (IOException ioe) {
logger.error("", ioe);
} catch (Exception ex) {
logger.error("", ex);
}
}
public static boolean saveFile(
HttpServlet servlet,
String contentPath,
String path,
HttpServletRequest req,
HttpServletResponse res) {
// @todo Need to use logServerAccess() below here.
boolean debugRequest = Debug.isSet("SaveFile");
if (debugRequest) log.debug(" saveFile(): path= " + path);
String filename = contentPath + path; // absolute path
File want = new File(filename);
// backup current version if it exists
int version = getBackupVersion(want.getParent(), want.getName());
String fileSave = filename + "~" + version;
File file = new File(filename);
if (file.exists()) {
try {
IO.copyFile(filename, fileSave);
} catch (IOException e) {
log.error(
"saveFile(): Unable to save copy of file "
+ filename
+ " to "
+ fileSave
+ "\n"
+ e.getMessage());
return false;
}
}
// save new file
try {
OutputStream out = new BufferedOutputStream(new FileOutputStream(filename));
IO.copy(req.getInputStream(), out);
out.close();
if (debugRequest) log.debug("saveFile(): ok= " + filename);
res.setStatus(HttpServletResponse.SC_CREATED);
log.info(UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_CREATED, -1));
return true;
} catch (IOException e) {
log.error(
"saveFile(): Unable to PUT file " + filename + " to " + fileSave + "\n" + e.getMessage());
return false;
}
}
/**
* Method use OpenCsv Library for
*
* @param fileInputCsv the File CSV to parse.
* @param separator the char separator.
* @return the List of Bean parsed from the CSV file.
*/
public static List<String[]> parseCSVFileAsList(File fileInputCsv, char separator) {
try {
List<String[]> records;
// read all lines at once
try ( // create CSVReader object
CSVReader reader = new CSVReader(new FileReader(fileInputCsv), separator)) {
// read all lines at once
records = reader.readAll();
Iterator<String[]> iterator = records.iterator();
records.clear();
// skip header row
iterator.next();
while (iterator.hasNext()) {
String[] record = iterator.next();
records.add(record);
}
}
return records;
} catch (IOException e) {
logger.error(
"Can't parse the CSV file:" + fileInputCsv.getAbsolutePath() + " -> " + e.getMessage(),
e);
return new ArrayList<>();
}
}
private void initRSTA(String syntaxstyle) {
rsTextArea.setCodeFoldingEnabled(true);
rsTextArea.setAntiAliasingEnabled(true);
// rsTextArea.setSyntaxEditingStyle(SyntaxConstants.SYNTAX_STYLE_JAVA);
rsTextArea.setSyntaxEditingStyle(syntaxstyle);
rTextScrollPane1.setFoldIndicatorEnabled(true);
rTextScrollPane1.setLineNumbersEnabled(true);
// Create a toolbar with searching options.
nextButton.setActionCommand("FindNext");
nextButton.addActionListener(this);
searchField.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
nextButton.doClick(0);
}
});
prevButton.setActionCommand("FindPrev");
prevButton.addActionListener(this);
try {
// Theme theme =
// Theme.load(getClass().getResourceAsStream("/jeplus/gui/themes/eclipse.xml"));
Theme theme = Theme.load(new FileInputStream("RSyntaxTheme.xml"));
theme.apply(rsTextArea);
} catch (IOException ioe) { // Never happens
logger.error("Failed to apply theme from RSyntaxTheme.xml. Default is used.", ioe);
}
setFont(rsTextArea, rsTextArea.getFont().deriveFont(13f));
}
public void create(Project project) {
Assert.isNull(
projectService.findProject(project.getName()),
"project [" + project.getName() + "] has exist");
MongoTemplate template = project.fetchMongoTemplate();
Assert.notNull(template, "mongo uri is not access");
Assert.notNull(template.getDb(), "mongo uri is not access");
Assert.isTrue(
project.fetchMongoTemplate().collectionExists(project.getLogCollection()),
" [" + project.getLogCollection() + "] 日志表不存在");
try {
List<Task> taskList = Lists.newArrayList();
logger.debug("init task count:{}", project.getTasks().size());
for (Task _task : project.getTasks()) {
Task task = getTemplateTask(_task);
Task tempTask = renderTemplateTask(task, project);
if (tempTask != null) taskList.add(tempTask);
}
project.setTasks(taskList);
} catch (Exception e) {
logger.error("", e);
throw new IllegalArgumentException("自动添加监控脚本错误:" + e.getMessage());
}
projectService.saveProject(project);
}
/**
* Utility to load content of a file into a String object
*
* @param filename String
* @return String
*/
public static String getFileContent(String filename) {
String content = null;
try (BufferedReader r =
new BufferedReader(new InputStreamReader(new FileInputStream(filename), "ISO-8859-1"))) {
String line = r.readLine();
StringBuilder buf = new StringBuilder();
while (line != null) {
buf.append(line).append('\n');
line = r.readLine();
}
content = buf.toString();
} catch (IOException ioe) {
logger.error("", ioe);
} catch (Exception ex) {
logger.error("", ex);
}
return content;
}
public static File getResourceSpringAsFile(String pathRelativeToFileOnResourceFolder) {
try {
//noinspection ConstantConditions
return getResourceSpringAsResource(pathRelativeToFileOnResourceFolder, null, null).getFile();
} catch (IOException e) {
logger.error(e.getMessage(), e);
return null;
}
}
/**
* Method to get the String array of the columns of a CSV File.
*
* @param contentWithHeaders the {@link List} of {@link String} array of the content of the csv.
* @return a String Array of the columns.
*/
public static String[] getHeaders(List<String[]> contentWithHeaders) {
String[] columns = new String[0];
try {
String[] headers = contentWithHeaders.get(0);
if (headers.length <= 1) {
throw new Exception("Can't find the delimiter with openCSV try with Univicity method.");
}
} catch (Exception e) {
logger.error("Can't find the Headers on the content", e);
}
return columns;
}
/**
* Send given content string as the HTTP response.
*
* @param contents the string to return as the HTTP response.
* @param res the HttpServletResponse
* @throws IOException if an I/O error occurs while writing the response.
*/
public static void returnString(String contents, HttpServletResponse res) throws IOException {
try {
ServletOutputStream out = res.getOutputStream();
IO.copy(new ByteArrayInputStream(contents.getBytes()), out);
log.info(
UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_OK, contents.length()));
} catch (IOException e) {
log.error(" IOException sending string: ", e);
log.info(UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_NOT_FOUND, 0));
res.sendError(HttpServletResponse.SC_NOT_FOUND, "Problem sending string: " + e.getMessage());
}
}
/**
* ************************************************************************ Sends an error to the
* client.
*
* @param t The exception that caused the problem.
* @param res The <code>HttpServletResponse</code> for the client.
*/
public static void handleException(Throwable t, HttpServletResponse res) {
try {
String message = t.getMessage();
if (message == null) message = "NULL message " + t.getClass().getName();
if (Debug.isSet("trustedMode")) { // security issue: only show stack if trusted
ByteArrayOutputStream bs = new ByteArrayOutputStream();
PrintStream ps = new PrintStream(bs);
t.printStackTrace(ps);
message = new String(bs.toByteArray());
}
log.info(
UsageLog.closingMessageForRequestContext(
HttpServletResponse.SC_BAD_REQUEST, message.length()));
log.error("handleException", t);
t.printStackTrace(); // debugging - log.error not showing stack trace !!
if (!res.isCommitted()) res.sendError(HttpServletResponse.SC_BAD_REQUEST, message);
} catch (Throwable e) {
log.error("handleException() had problem reporting Exception", e);
t.printStackTrace();
}
}
private double getTime(StructureMembers.Member timeVar, StructureData sdata) {
if (timeVar == null) return 0.0;
if ((timeVar.getDataType() == DataType.CHAR) || (timeVar.getDataType() == DataType.STRING)) {
String time = sdata.getScalarString(timeVar);
CalendarDate date = CalendarDateFormatter.isoStringToCalendarDate(null, time);
if (date == null) {
log.error("Cant parse date - not ISO formatted, = " + time);
return 0.0;
}
return date.getMillis() / 1000.0;
} else {
return sdata.convertScalarDouble(timeVar);
}
}
/**
* Method to write a CSV List of Array of String to System Console..
*
* @param content the List of Array of String to convert.
* @param separator the char separator.
*/
public static void writeCSVDataToConsole(List<String[]> content, char separator) {
try {
Writer writer = new OutputStreamWriter(System.out, StringUtilities.UTF_8);
CSVWriter csvWriter;
if (StringUtilities.NULL_CHAR2 == separator) {
csvWriter =
new CSVWriter(writer, CSVWriter.DEFAULT_SEPARATOR, CSVWriter.NO_QUOTE_CHARACTER);
} else {
csvWriter = new CSVWriter(writer, separator, CSVWriter.NO_QUOTE_CHARACTER);
}
csvWriter.writeAll(content, false);
csvWriter.close();
} catch (IOException e) {
logger.error("Can't write the CSV to Console -> " + e.getMessage(), e);
}
}
/**
* Method to get the String array of the columns of a CSV File.
*
* @param fileCSV the File CSV.
* @param hasFirstLine if true the first line of CSV File contains the columns name.
* @return a String Array of the columns.
*/
public static String[] getHeaders(File fileCSV, boolean hasFirstLine) {
String[] columns = new String[0];
try {
CSVReader reader = new CSVReader(new FileReader(fileCSV));
columns = reader.readNext(); // assuming first read
if (!hasFirstLine) {
int columnCount = 0;
if (columns != null) columnCount = columns.length;
columns = new String[columnCount];
for (int i = 0; i < columnCount; i++) {
columns[i] = "Column#" + i;
}
}
} catch (IOException e) {
logger.error("Can't find the Headers on the CSV File", e);
}
return columns;
}
/**
* Method to write a CSV Data List of Beans to a String.
*
* @param beans the List of Beans to convert.
* @param separator the char separator.
* @param <T> the generic variable.
* @return the String content of the List of Beans.
*/
public static <T> String writeCSVDataToStringWithBeans(List<T> beans, char separator) {
try {
Writer writer = new StringWriter();
try (CSVWriter csvWriter = new CSVWriter(writer, separator)) {
List<String[]> data = toStringArray(beans);
csvWriter.writeAll(data);
}
return writer.toString();
} catch (IOException e) {
logger.error(
"Can't write the CSV String from the Bean:"
+ beans.get(0).getClass().getName()
+ " -> "
+ e.getMessage(),
e);
return "";
}
}
public static String readResource(Resource resource) {
try {
/* org.springframework.core.io.Resource resource =
new org.springframework.core.io.ClassPathResource(fileLocationInClasspath);*/
BufferedReader br =
new BufferedReader(new InputStreamReader(resource.getInputStream()), 1024);
StringBuilder stringBuilder = new StringBuilder();
String line;
while ((line = br.readLine()) != null) {
stringBuilder.append(line).append('\n');
}
br.close();
return stringBuilder.toString();
} catch (Exception e) {
logger.error(e.getMessage(), e);
return null;
}
}
/**
* Method to write a CSV Data List of Array of String to a String.
*
* @param content the List of Array of String to convert.
* @param separator the char separator.
* @return the String content of the List of Beans.
*/
public static String writeCSVDataToString(List<String[]> content, char separator) {
try {
Writer writer = new StringWriter();
CSVWriter csvWriter;
if (StringUtilities.NULL_CHAR2 == separator) {
csvWriter =
new CSVWriter(writer, CSVWriter.DEFAULT_SEPARATOR, CSVWriter.NO_QUOTE_CHARACTER);
} else {
csvWriter = new CSVWriter(writer, separator, CSVWriter.NO_QUOTE_CHARACTER);
}
csvWriter.writeAll(content);
csvWriter.close();
return writer.toString();
} catch (IOException e) {
logger.error("Can't write the CSV String -> " + e.getMessage(), e);
return "";
}
}
/**
* Method to write a CSV File from List of Array of String.
*
* @param content the List of Array of String to convert.
* @param separator the char separator.
* @param fileOutputCsv the output File Csv to create.
* @return the File Csv created.
*/
public static File writeCSVDataToFile(
List<String[]> content, char separator, File fileOutputCsv) {
try {
Writer writer =
new FileWriter(fileOutputCsv, true); // the true value make append the result...
CSVWriter csvWriter;
if (StringUtilities.NULL_CHAR2 == separator) {
csvWriter =
new CSVWriter(writer, CSVWriter.DEFAULT_SEPARATOR, CSVWriter.NO_QUOTE_CHARACTER);
} else {
csvWriter = new CSVWriter(writer, separator, CSVWriter.NO_QUOTE_CHARACTER);
}
csvWriter.writeAll(content);
csvWriter.close();
return fileOutputCsv;
} catch (IOException e) {
logger.error("Can't write the CSV to File:" + fileOutputCsv + " -> " + e.getMessage(), e);
return null;
}
}
public static File getResourceAsFile(String name, Class<?> thisClass) {
ClassLoader classLoader = thisClass.getClassLoader();
try {
//noinspection ConstantConditions
// String path = classLoader.getResource("").getPath();
// ///C:/Users/tenti/Desktop/Projects/gate-basic/target/test-classes/
return new File(classLoader.getResource(name).getFile());
} catch (NullPointerException e) {
try {
// return new
// File(Thread.currentThread().getContextClassLoader().getResource(name).getFile());
// ClassLoader classLoader = Config.class.getClassLoader();
// URL resource = classLoader.getResource(name);
// String path = Paths.get(resource.toURI()).toAbsolutePath().toString();
File file = null;
URL url = null;
if (classLoader != null) {
url = classLoader.getResource(name);
}
if (url == null) {
url = ClassLoader.getSystemResource(name);
}
if (url != null) {
try {
file = new File(url.toURI());
} catch (URISyntaxException e5) {
file = new File(url.getPath());
}
}
if (file == null) {
file = getResourceAsFileFromBuildFolder(name);
}
// return new File(path);
return file;
} catch (NullPointerException | IOException e2) {
logger.error(e2.getMessage(), e2);
return new File("");
}
}
}
/**
* Method use OpenCsv Library for
*
* @param columnMapping Map allow the user to pass the column Names to a Field Names of the Class.
* @param fileInputCsv the File CSV to parse.
* @param <T> the generic variable.
* @return the List of Bean parsed from the CSV file.
*/
public static <T> List<T> parseCSVFileAsList(
Map<String, String> columnMapping, File fileInputCsv) {
try {
HeaderColumnNameTranslateMappingStrategy<T> beanStrategy =
new HeaderColumnNameTranslateMappingStrategy<>();
// beanStrategy.setType(clazz); //deprecated
/*Map<String, String> columnMapping = new HashMap<>();
columnMapping.put("ID", "id");
columnMapping.put("Name", "name");
columnMapping.put("Role", "role");*/
beanStrategy.setColumnMapping(columnMapping);
CsvToBean<T> csvToBean = new CsvToBean<>();
CSVReader reader = new CSVReader(new FileReader(fileInputCsv));
return csvToBean.parse(beanStrategy, reader);
} catch (IOException e) {
logger.error(
"Can't parse the CSV file:" + fileInputCsv.getAbsolutePath() + " -> " + e.getMessage(),
e);
return new ArrayList<>();
}
}
public Task renderTemplateTask(Task task, Project project) {
try {
Task task1 = new Task();
task1.setCron(task.getCron());
task1.setName(task.getName());
task1.setTimeout(task.getTimeout());
Writer out = new StringWriter();
File file = getTemplateFile(task1.getName());
String temp = FileUtils.readFileToString(file, "utf-8");
Map map = Maps.newHashMap();
map.put("project", project);
Context context = new VelocityContext(map);
velocityEngine.evaluate(context, out, this.getClass().getName(), temp);
task1.setScript(out.toString());
return task1;
} catch (Exception e) {
logger.error("init task from template fail:", e);
return null;
}
}
private static int getBackupVersion(String dirName, String fileName) {
int maxN = 0;
File dir = new File(dirName);
if (!dir.exists()) return -1;
String[] files = dir.list();
if (null == files) return -1;
for (String name : files) {
if (name.indexOf(fileName) < 0) continue;
int pos = name.indexOf('~');
if (pos < 0) continue;
String ver = name.substring(pos + 1);
int n = 0;
try {
n = Integer.parseInt(ver);
} catch (NumberFormatException e) {
log.error("Format Integer error on backup filename= " + ver);
}
maxN = Math.max(n, maxN);
}
return maxN + 1;
}
/**
* Method to get the content of a comma separated file (.csv,.input,.txt)
*
* @param CSV the File comma separated.
* @param noHeaders if true jump the first line of the content.
* @return the List of Array of the content of the File comma separated.
*/
public static List<String[]> parseCSVFileAsList(File CSV, boolean noHeaders) {
List<String[]> content;
try {
CSVReader reader1 = new CSVReader(new FileReader(CSV));
content = reader1.readAll();
/* List<String[]> myDatas = reader1.readAll();
String[] lineI = myDatas.get(i);
for (String[] line : myDatas) {
for (String value : line) {
//do stuff with value
}
}*/
if (noHeaders) content.remove(0);
if (content.get(0).length <= 1) {
logger.warn(
"Attention: You haven't parsed correctly the CSV file with OpenCSV API try with Univocity Method");
}
return content;
} catch (IOException e) {
logger.error("Can't find the CSV File:" + e.getMessage(), e);
return null;
}
}
/**
* Method use OpenCsv Library for
*
* @param clazz the Class of the Bean.
* @param fileInputCsv the File CSV to parse.
* @param separator the char separator.
* @param <T> the generic variable.
* @return the List of Bean parsed from the CSV file.
*/
public static <T> List<T> parseCSVFileAsList(Class<T> clazz, File fileInputCsv, char separator) {
try {
List<T> beans;
try ( // create CSVReader object
CSVReader reader = new CSVReader(new FileReader(fileInputCsv), separator)) {
beans = new ArrayList<>();
// read line by line
String[] record;
// skip header row
String[] headers = reader.readNext();
// read content
while ((record = reader.readNext()) != null) {
T t = ReflectionUtilities.invokeConstructor(clazz);
for (int i = 0; i < record.length; i++) {
String nameMethod = "set" + org.apache.commons.lang3.StringUtils.capitalize(headers[i]);
// invoke setter method
if (ReflectionUtilities.checkMethod(clazz, nameMethod)) {
ReflectionUtilities.invokeSetter(t, nameMethod, record[i]);
} else {
logger.warn(
"Not exists the Method with name:"
+ nameMethod
+ " on the Bean:"
+ t.getClass().getName());
}
}
beans.add(t);
}
}
return beans;
} catch (IOException e) {
logger.error(
"Can't parse the CSV file:" + fileInputCsv.getAbsolutePath() + " -> " + e.getMessage(),
e);
return new ArrayList<>();
}
}
private static ApplicationContext loadApplicationContextSpring(
Class<?> thisClass, String... filePaths) {
ApplicationContext context = new GenericApplicationContext();
// Clean the path for load the context...
for (int i = 0; i < filePaths.length; i++) {
if (filePaths[i].startsWith(File.separator) || filePaths[i].startsWith("/")) {
filePaths[i] = filePaths[i].substring(1, filePaths[i].length());
}
}
// This container loads the definitions of the beans from an XML file.
// Here you do not need to provide the full path of the XML file but
// you need to set CLASSPATH properly because this container will look
// bean configuration XML file in CLASSPATH.
// You can force with the fileSystem using "file:" instead of "classpath:".
try {
context = new ClassPathXmlApplicationContext(filePaths, true);
} catch (Exception e0) {
try {
if (e0.getCause().getMessage().contains("has already been set")) {
logger.warn(e0.getMessage() + "->" + e0.getCause());
}
} catch (java.lang.NullPointerException e) {
/*do nothing*/
}
try {
context = new ClassPathXmlApplicationContext(filePaths, true);
} catch (Exception e1) {
if (thisClass != null) {
try {
context = new ClassPathXmlApplicationContext(filePaths, thisClass);
} catch (Exception e2) {
try {
// This container loads the definitions of the beans from an XML file.
// Here you need to provide the full path of the XML bean configuration file to the
// constructor.
// You can force with file: property to the class file.
List<String> files = new ArrayList<>();
for (String spath : filePaths) {
Path path = getResourceAsFile(spath, thisClass).toPath();
if (Files.exists(path) && path.toRealPath() != null) {
files.add(path.toAbsolutePath().toString());
} else {
logger.warn("The resource with path:" + path.toString() + " not exists");
}
}
if (!files.isEmpty()) {
context =
new FileSystemXmlApplicationContext(
files.toArray(new String[files.size()]), true);
} else {
logger.warn("The paths used are reference 0 resources return NULL value");
return null;
}
} catch (Exception e3) {
logger.error(e3.getMessage(), e3);
}
}
} else {
logger.error(e1.getMessage(), e1);
}
}
}
return context;
}
public void doGet(HttpServletRequest request, HttpServletResponse response) {
log.info("doGet(): " + UsageLog.setupRequestContext(request));
// System.out.printf("opendap doGet: req=%s%n%s%n", ServletUtil.getRequest(request),
// ServletUtil.showRequestDetail(this, request));
String path = null;
ReqState rs = getRequestState(request, response);
try {
path = request.getPathInfo();
log.debug("doGet path={}", path);
if (thredds.servlet.Debug.isSet("showRequestDetail"))
log.debug(ServletUtil.showRequestDetail(this, request));
if (path == null) {
log.info(
"doGet(): "
+ UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_NOT_FOUND, -1));
response.sendError(HttpServletResponse.SC_NOT_FOUND);
return;
}
if (baseURI == null) { // first time, set baseURI
URI reqURI = ServletUtil.getRequestURI(request);
// Build base URI from request (rather than hard-coding "/thredds/dodsC/").
String baseUriString = request.getContextPath() + request.getServletPath() + "/";
baseURI = reqURI.resolve(baseUriString);
log.debug("doGet(): baseURI was set = {}", baseURI);
}
if (path.endsWith("latest.xml")) {
DataRootHandler.getInstance().processReqForLatestDataset(this, request, response);
return;
}
// Redirect all catalog requests at the root level.
if (path.equals("/") || path.equals("/catalog.html") || path.equals("/catalog.xml")) {
ServletUtil.sendPermanentRedirect(ServletUtil.getContextPath() + path, request, response);
return;
}
// Make sure catalog requests match a dataRoot before trying to handle.
if (path.endsWith("/") || path.endsWith("/catalog.html") || path.endsWith("/catalog.xml")) {
if (!DataRootHandler.getInstance().hasDataRootMatch(path)) {
log.info(
"doGet(): "
+ UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_NOT_FOUND, -1));
response.sendError(HttpServletResponse.SC_NOT_FOUND);
return;
}
if (!DataRootHandler.getInstance().processReqForCatalog(request, response))
log.error(
"doGet(): "
+ UsageLog.closingMessageForRequestContext(
ServletUtil.STATUS_FORWARD_FAILURE, -1));
return;
}
if (rs != null) {
String dataSet = rs.getDataSet();
String requestSuffix = rs.getRequestSuffix();
if ((dataSet == null) || dataSet.equals("/") || dataSet.equals("")) {
doGetDIR(rs);
} else if (requestSuffix.equalsIgnoreCase("blob")) {
doGetBLOB(rs);
} else if (requestSuffix.equalsIgnoreCase("close")) {
doClose(rs);
} else if (requestSuffix.equalsIgnoreCase("dds")) {
doGetDDS(rs);
} else if (requestSuffix.equalsIgnoreCase("das")) {
doGetDAS(rs);
} else if (requestSuffix.equalsIgnoreCase("ddx")) {
doGetDDX(rs);
} else if (requestSuffix.equalsIgnoreCase("dods")) {
doGetDAP2Data(rs);
} else if (requestSuffix.equalsIgnoreCase("asc")
|| requestSuffix.equalsIgnoreCase("ascii")) {
doGetASC(rs);
} else if (requestSuffix.equalsIgnoreCase("info")) {
doGetINFO(rs);
} else if (requestSuffix.equalsIgnoreCase("html")
|| requestSuffix.equalsIgnoreCase("htm")) {
doGetHTML(rs);
} else if (requestSuffix.equalsIgnoreCase("ver")
|| requestSuffix.equalsIgnoreCase("version")
|| dataSet.equalsIgnoreCase("/version")
|| dataSet.equalsIgnoreCase("/version/")) {
doGetVER(rs);
} else if (dataSet.equalsIgnoreCase("/help")
|| dataSet.equalsIgnoreCase("/help/")
|| dataSet.equalsIgnoreCase("/" + requestSuffix)
|| requestSuffix.equalsIgnoreCase("help")) {
doGetHELP(rs);
} else {
sendErrorResponse(response, HttpServletResponse.SC_BAD_REQUEST, "Unrecognized request");
return;
}
} else {
sendErrorResponse(response, HttpServletResponse.SC_BAD_REQUEST, "Unrecognized request");
return;
}
log.info(UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_OK, -1));
// plain ol' 404
} catch (FileNotFoundException e) {
sendErrorResponse(response, HttpServletResponse.SC_NOT_FOUND, e.getMessage());
// DAP2Exception bad url
} catch (BadURLException e) {
log.info(UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_BAD_REQUEST, -1));
response.setStatus(HttpServletResponse.SC_BAD_REQUEST);
dap2ExceptionHandler(e, rs);
// all other DAP2Exception
} catch (DAP2Exception de) {
int status =
(de.getErrorCode() == DAP2Exception.NO_SUCH_FILE)
? HttpServletResponse.SC_NOT_FOUND
: HttpServletResponse.SC_BAD_REQUEST;
if ((de.getErrorCode() != DAP2Exception.NO_SUCH_FILE) && (de.getErrorMessage() != null))
log.debug(de.getErrorMessage());
log.info(UsageLog.closingMessageForRequestContext(status, -1));
response.setStatus(status);
dap2ExceptionHandler(de, rs);
// parsing, usually the CE
} catch (ParseException pe) {
log.info(UsageLog.closingMessageForRequestContext(HttpServletResponse.SC_BAD_REQUEST, -1));
response.setStatus(HttpServletResponse.SC_BAD_REQUEST);
parseExceptionHandler(pe, response);
// 403 - request too big
} catch (UnsupportedOperationException e) {
sendErrorResponse(response, HttpServletResponse.SC_FORBIDDEN, e.getMessage());
} catch (java.net.SocketException e) {
log.info("SocketException: " + e.getMessage(), e);
log.info(UsageLog.closingMessageForRequestContext(ServletUtil.STATUS_CLIENT_ABORT, -1));
} catch (IOException e) {
String eName =
e.getClass().getName(); // dont want compile time dependency on ClientAbortException
if (eName.equals("org.apache.catalina.connector.ClientAbortException")) {
log.debug("ClientAbortException: " + e.getMessage());
log.info(UsageLog.closingMessageForRequestContext(ServletUtil.STATUS_CLIENT_ABORT, -1));
return;
}
log.error("path= " + path, e);
sendErrorResponse(response, HttpServletResponse.SC_INTERNAL_SERVER_ERROR, e.getMessage());
// everything else
} catch (Throwable t) {
log.error("path= " + path, t);
t.printStackTrace();
sendErrorResponse(response, HttpServletResponse.SC_INTERNAL_SERVER_ERROR, t.getMessage());
}
}
/** Read parameter table. */
private void readParameterTable() {
if (path == null) {
logger.error("GribPDSParamTable: unknown path for " + this);
return;
}
try {
InputStream is = GribResourceReader.getInputStream(path);
if (is == null) {
logger.error("GribPDSParamTable: error getInputStream on " + this);
return;
}
BufferedReader br = new BufferedReader(new InputStreamReader(is));
// Read first line that has center, subcenter, and version of table
String line = br.readLine();
if (debug) System.out.println(line);
String[] tableDefArr = line.split(":");
/* LOOK - why not test values ?
center = Integer.parseInt(tableDefArr[1].trim());
subcenter = Integer.parseInt(tableDefArr[2].trim());
number = Integer.parseInt(tableDefArr[3].trim());
if ((center != center_id) && (subcenter != subcenter_id)
&& (number != table_number)) {
throw new java.io.IOException(
"parameter table header values do not "
+ " match values in GRIB file. Possible error in lookup table.");
}
*/
HashMap<String, GridParameter> tmpParameters =
new HashMap<String, GridParameter>(); // thread safe - temp hash
// rdg - added the 0 line length check to cover the case of blank lines at
// the end of the parameter table file.
while ((line = br.readLine()) != null) {
if ((line.length() == 0) || line.startsWith("#")) {
continue;
}
GridParameter parameter = new GridParameter();
tableDefArr = line.split(":");
parameter.setNumber(Integer.parseInt(tableDefArr[0].trim()));
parameter.setName(tableDefArr[1].trim());
// check to see if unit defined, if not, parameter is undefined
if (tableDefArr[2].indexOf('[') == -1) {
// Undefined unit
parameter.setDescription(tableDefArr[2].trim());
parameter.setUnit(tableDefArr[2].trim());
} else {
String[] arr2 = tableDefArr[2].split("\\[");
parameter.setDescription(makeValidDesc(arr2[0].trim()));
// System.out.println( "Desc ="+ parameter.getDescription());
// Remove "]"
parameter.setUnit(arr2[1].substring(0, arr2[1].lastIndexOf(']')).trim());
}
tmpParameters.put(Integer.toString(parameter.getNumber()), parameter);
if (debug)
System.out.println(
parameter.getNumber() + " " + parameter.getDescription() + " " + parameter.getUnit());
}
this.parameters = tmpParameters; // thread safe
} catch (IOException ioError) {
logger.warn(
"An error occurred in GribPDSParamTable while trying to open the parameter table "
+ filename
+ " : "
+ ioError);
}
}
protected void logServerError(
String message, Exception exception, ContainerRequestContext requestContext) {
logger.error(message, exception);
}