public EnrichedRegion(SmoothingWindow window) {
start = window.getStart();
stop = window.getStop();
}
// methods
public String getBed5(int scoreIndex) {
float score = bestWindow.getScores()[scoreIndex];
return chromosome + "\t" + start + "\t" + stop + "\t.\t" + score + "\t.";
}
// constructors
public EnrichedRegion(SmoothingWindow window, String chromosome) {
chromosome = this.chromosome = chromosome;
start = window.getStart();
stop = window.getStop();
bestWindow = window;
}