/** Shut down communication with the autosampler. */
public void disconnect() {
if (m_reader != null) {
m_reader.quit();
m_reader.interrupt();
}
if (m_sender != null) {
m_sender.quit();
m_sender.interrupt();
}
if (m_statusPoller != null) {
m_statusPoller.quit();
m_statusPoller.interrupt();
}
if (m_CryoSocket != null) {
m_CryoSocket.disconnect();
m_CryoSocket = null;
}
}
/**
* Send a command to the cryobay.
*
* @param commandMessage The string to send to the cryobay.
* @return True if there is a connection to the cryobay
*/
public synchronized boolean sendToCryoBay(String command) {
if (m_sender == null) {
m_sender = new Sender(null, m_retries, this);
m_sender.start();
}
if (isConnected()) {
m_sender.addCommand(command);
// TODO: (Java 5) Release semaphore here
// m_sender.interrupt(); // Wake up the run() method
return true;
} else {
return false;
}
}
/**
* @param data Guaranteed to be non null
* @param offset
* @param length
*/
public void send(byte[] data, int offset, int length) throws Exception {
if (sender != null) {
byte[] copy = new byte[length];
System.arraycopy(data, offset, copy, 0, length);
sender.addToQueue(new Buffer(copy, 0, length));
} else _send(data, offset, length, true, true);
}
public void start() {
if (receiver != null) receiver.stop();
receiver = new Receiver(server.factory).start();
if (isSenderUsed()) {
if (sender != null) sender.stop();
sender = new Sender(server.factory, server.sendQueueSize()).start();
}
}
/**
* @param data Guaranteed to be non null
* @param offset
* @param length
*/
private void send(byte[] data, int offset, int length) throws Exception {
if (isSenderUsed()) {
// we need to copy the byte[] buffer here because the original buffer might get
// changed meanwhile
byte[] tmp = new byte[length];
System.arraycopy(data, offset, tmp, 0, length);
sender.addToQueue(tmp);
} else {
_send(data, offset, length, true);
}
}
/**
* Does the work for processReply.
*
* @see #processReply
*/
private void processReplyInEventThread(String what, boolean value) {
// Messages.postDebug("cryocmd", "CryoSocketControl.processReply("
// + what + ", " + value + ")");
if (debug) System.out.println("CryoSocketControl.gotReply: " + what);
if (what != null) {
m_sender.gotReply(value);
processStatus(what, value);
}
}
private void start(ThreadFactory f) {
// only start once....
if (active.compareAndSet(false, true)) {
connectionPeerReceiver = new ConnectionPeerReceiver(f);
connectionPeerReceiver.start();
if (isSenderUsed()) {
sender = new Sender(f, getSenderQueueSize());
sender.start();
}
}
}
public void close() throws IOException {
// can close even if start was never called...
send_lock.lock();
try {
connectionPeerReceiver.stop();
if (isSenderUsed()) {
sender.stop();
}
Util.close(sock);
Util.close(out);
Util.close(in);
} finally {
send_lock.unlock();
}
mapper.notifyConnectionClosed(peer_addr);
}
public void close() throws IOException {
send_lock.lock();
try {
Util.close(out, in, sock);
if (receiver != null) {
receiver.stop();
receiver = null;
}
if (sender != null) {
sender.stop();
sender = null;
}
} finally {
send_lock.unlock();
}
}
public boolean isOpen() {
return isConnected()
&& (!isSenderUsed() || sender.isRunning())
&& (connectionPeerReceiver != null && connectionPeerReceiver.isRunning());
}
/**
* Test if substrate is ready to send more packets.
*
* @return true if substrate is ready
*/
public boolean ready() {
return sndr.ready();
}
/**
* Send a packet.
*
* @param p is a packet to be sent
*/
public void send(Packet p) {
sndr.send(p);
}
/** Wait for Substrate to stop. */
public void join() throws Exception {
sndr.join();
rcvr.join();
}
/** Start Substrate running. */
public void start() {
sndr.start();
rcvr.start();
}