Beispiel #1
0
  // read all the missiles of the current id launcher
  protected void readMissilesForGivenLauncher(NodeList missiles, String idLauncher) {
    int launchTime, flyTime, damage;

    for (int i = 0; i < missiles.getLength(); i++) {
      Element missile = (Element) missiles.item(i);

      String id = missile.getAttribute("id");
      String destination = missile.getAttribute("destination");

      try {
        launchTime = Integer.parseInt(missile.getAttribute("launchTime"));
        flyTime = Integer.parseInt(missile.getAttribute("flyTime"));
        damage = Integer.parseInt(missile.getAttribute("damage"));

      } catch (NumberFormatException e) {
        launchTime = -1;
        flyTime = -1;
        damage = -1;
        System.out.println("ERROR reading from XML");
        // System.out.println(e.getStackTrace());
      }

      // create the thread of the missile
      createEnemyMissile(id, destination, launchTime, flyTime, damage, idLauncher);
    }
  }
Beispiel #2
0
  // read all defense missiles from given id
  protected void readDefensDestructoreMissiles(NodeList missiles, String whoLaunchMeId) {
    String targetId, destructTimeCheck;
    int destructTime;

    int size = missiles.getLength();
    for (int i = 0; i < size; i++) {
      Element missile = (Element) missiles.item(i);
      targetId = missile.getAttribute("id");

      destructTimeCheck = missile.getAttribute("destructAfterLaunch");

      if (destructTimeCheck.equals("")) destructTimeCheck = missile.getAttribute("destructTime");

      try {
        destructTime = Integer.parseInt(destructTimeCheck);

      } catch (NumberFormatException e) {
        destructTime = -1;
        // System.out.println(e.getStackTrace());
      }

      // create the thread of the missile
      createDefenseMissile(whoLaunchMeId, targetId, destructTime);
    }
  }
 /**
  * Unmarshall a Genotype instance from a given XML Element representation. Its population of
  * Chromosomes will be unmarshalled from the Chromosome sub-elements.
  *
  * @param a_activeConfiguration the current active Configuration object that is to be used during
  *     construction of the Genotype and Chromosome instances
  * @param a_xmlElement the XML Element representation of the Genotype
  * @return a new Genotype instance, complete with a population of Chromosomes, setup with the data
  *     from the XML Element representation
  * @throws ImproperXMLException if the given Element is improperly structured or missing data
  * @throws InvalidConfigurationException if the given Configuration is in an inconsistent state
  * @throws UnsupportedRepresentationException if the actively configured Gene implementation does
  *     not support the string representation of the alleles used in the given XML document
  * @throws GeneCreationException if there is a problem creating or populating a Gene instance
  * @author Neil Rotstan
  * @author Klaus Meffert
  * @since 1.0
  */
 public static Genotype getGenotypeFromElement(
     Configuration a_activeConfiguration, Element a_xmlElement)
     throws ImproperXMLException, InvalidConfigurationException,
         UnsupportedRepresentationException, GeneCreationException {
   // Sanity check. Make sure the XML element isn't null and that it
   // actually represents a genotype.
   if (a_xmlElement == null || !(a_xmlElement.getTagName().equals(GENOTYPE_TAG))) {
     throw new ImproperXMLException(
         "Unable to build Genotype instance from XML Element: "
             + "given Element is not a 'genotype' element.");
   }
   // Fetch all of the nested chromosome elements and convert them
   // into Chromosome instances.
   // ------------------------------------------------------------
   NodeList chromosomes = a_xmlElement.getElementsByTagName(CHROMOSOME_TAG);
   int numChromosomes = chromosomes.getLength();
   Population population = new Population(a_activeConfiguration, numChromosomes);
   for (int i = 0; i < numChromosomes; i++) {
     population.addChromosome(
         getChromosomeFromElement(a_activeConfiguration, (Element) chromosomes.item(i)));
   }
   // Construct a new Genotype with the chromosomes and return it.
   // ------------------------------------------------------------
   return new Genotype(a_activeConfiguration, population);
 }
  // Gets the specified XML Schema doc if one is mentioned in the file
  public static File getSchemaFile(Document xmlDoc) {
    /** @todo Must be an easier way of doing this... */
    logger.logComment("Getting schema file for: " + xmlDoc.getDocumentURI());

    NodeList nl = xmlDoc.getChildNodes();
    for (int j = 0; j < nl.getLength(); j++) {
      Node node = nl.item(j);
      logger.logComment("Type: " + node.getNodeType() + "Name: " + node.getNodeName());
      if (node.getNodeName().equals(XML_STYLESHEET_NODE)) {
        String nodeVal = node.getNodeValue();

        logger.logComment("Looking at: " + nodeVal);
        String xslFileName =
            nodeVal.substring(nodeVal.indexOf("href=\"") + 6, nodeVal.length() - 1);
        File xslFile = new File(xslFileName);
        return xslFile;
      }

      if (node.getAttributes().getLength() > 0) {
        logger.logComment("Attributes: " + node.getAttributes());
        if (node.getAttributes().getNamedItem(XML_SCHEMA_LOC_ATTR) != null) {
          String locString = node.getAttributes().getNamedItem(XML_SCHEMA_LOC_ATTR).getNodeValue();
          logger.logComment("Loc string: " + locString);
          String file = locString.split("\\s")[1];
          return new File(file);
        }
      }
    }
    logger.logError("No node found with name: " + XML_STYLESHEET_NODE);
    return null;
  }
  /*
   * Output this item. Then, if the element has child elements, output each.
   */
  private void outputItem(Element e, PrintWriter out) {
    int chk = 0;
    HashMap collection = new HashMap();
    String key = null;
    Element collectionElement = null;
    log.fine("outputing item for " + e.getAttribute("name") + ":   " + e.getAttribute("query"));
    out.println("<item>");
    out.println("<name>" + e.getAttribute("name") + "</name>");
    if (e.getTagName().equalsIgnoreCase("collection")) {

      // change made by NETTY (change collectionlist to collection)
      out.println(
          "<query>collection="
              + e.getAttribute("col_id")
              + "&amp;xsl=metadata_to_html_full</query>");
    } else {
      out.println(
          "<query>owner=" + e.getAttribute("query") + "&amp;xsl=metadata_to_html_full</query>");
    }
    // now output children

    NodeList children = e.getChildNodes();
    for (int i = 0; i < children.getLength(); i++) {
      Node child = children.item(i);
      if (child.getNodeType() == Node.ELEMENT_NODE) {
        chk++;
        outputItem((Element) child, out);
      }
    }

    out.println("</item>");
  }
  public ArrayList<String> parseXML() throws Exception {
    ArrayList<String> ret = new ArrayList<String>();

    handshake();

    URL url =
        new URL(
            "http://mangaonweb.com/page.do?cdn="
                + cdn
                + "&cpn=book.xml&crcod="
                + crcod
                + "&rid="
                + (int) (Math.random() * 10000));
    String page = DownloaderUtils.getPage(url.toString(), "UTF-8", cookies);

    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder builder = factory.newDocumentBuilder();
    InputSource is = new InputSource(new StringReader(page));
    Document d = builder.parse(is);
    Element doc = d.getDocumentElement();

    NodeList pages = doc.getElementsByTagName("page");
    total = pages.getLength();
    for (int i = 0; i < pages.getLength(); i++) {
      Element e = (Element) pages.item(i);
      ret.add(e.getAttribute("path"));
    }

    return (ret);
  }
Beispiel #7
0
  public static Element[] filterChildElements(Element parent, String ns, String lname) {
    /*
    way too noisy
            if (LOGGER.isDebugEnabled()) {
                StringBuilder buf = new StringBuilder(100);
                buf.append("XmlaUtil.filterChildElements: ");
                buf.append(" ns=\"");
                buf.append(ns);
                buf.append("\", lname=\"");
                buf.append(lname);
                buf.append("\"");
                LOGGER.debug(buf.toString());
            }
    */

    List<Element> elems = new ArrayList<Element>();
    NodeList nlst = parent.getChildNodes();
    for (int i = 0, nlen = nlst.getLength(); i < nlen; i++) {
      Node n = nlst.item(i);
      if (n instanceof Element) {
        Element e = (Element) n;
        if ((ns == null || ns.equals(e.getNamespaceURI()))
            && (lname == null || lname.equals(e.getLocalName()))) {
          elems.add(e);
        }
      }
    }
    return elems.toArray(new Element[elems.size()]);
  }
  // Lee la configuracion que se encuentra en conf/RegistryConf
  private void readConfXml() {
    try {
      File inputFile = new File("src/java/Conf/RegistryConf.xml");
      DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
      DocumentBuilder dBuilder = dbFactory.newDocumentBuilder();
      Document doc = dBuilder.parse(inputFile);
      doc.getDocumentElement().normalize();
      NodeList nList = doc.getElementsByTagName("RegistryConf");
      for (int i = 0; i < nList.getLength(); i++) {
        Node nNode = nList.item(i);
        if (nNode.getNodeType() == Node.ELEMENT_NODE) {
          Element eElement = (Element) nNode;
          RegistryConf reg = new RegistryConf();
          String aux;
          int idSensor;
          int value;
          aux = eElement.getElementsByTagName("idSensor").item(0).getTextContent();
          idSensor = Integer.parseInt(aux);
          reg.setIdSensor(idSensor);

          aux = eElement.getElementsByTagName("saveType").item(0).getTextContent();
          reg.setSaveTypeString(aux);

          aux = eElement.getElementsByTagName("value").item(0).getTextContent();
          value = Integer.parseInt(aux);
          reg.setValue(value);

          registryConf.add(reg);
          lastRead.put(idSensor, 0);
        }
      }
    } catch (Exception e) {
      e.printStackTrace();
    }
  }
 private void buildHierarchyDOM() {
   TransformerFactory factory = TransformerFactory.newInstance();
   StreamSource src =
       new StreamSource(
           this.getServletContext()
               .getResourceAsStream("/WEB-INF/classes/gpt/search/browse/ownerHierarchy.xml"));
   log.info("initializing src from stream " + src);
   try {
     Transformer t = factory.newTransformer();
     dom = new DOMResult();
     t.transform(src, dom);
     // now go thru tree, setting up the query attribute for each node
     Node tree = dom.getNode();
     NodeList children = tree.getChildNodes();
     log.info("dom tree contains " + children.getLength() + " nodes");
     for (int i = 0; i < children.getLength(); i++) {
       Node child = children.item(i);
       if (child.getNodeType() == Node.ELEMENT_NODE) {
         Element e = (Element) child;
         String query = computeQuery(e);
         e.setAttribute("query", query);
       }
     }
   } catch (Exception e) {
     log.severe("Could not init ownerHierarchy because exception thrown:");
     StringWriter sw = new StringWriter();
     e.printStackTrace(new PrintWriter(sw));
     log.severe(sw.toString());
   }
 }
Beispiel #10
0
  private static Header parseHeader(Node parent) throws XmlParserException {
    Header header = new Header();

    NodeList nodes = parent.getChildNodes();
    for (int nodeid = 0; nodeid < nodes.getLength(); ++nodeid) {
      Node node = nodes.item(nodeid);
      if (node.getNodeType() != Node.ELEMENT_NODE) continue;

      Element element = (Element) node;
      try {
        if (element.getTagName().equals("nrpeaks"))
          header.setNrPeaks(Integer.parseInt(element.getTextContent()));
        else if (element.getTagName().equals("date")) header.setDate(element.getTextContent());
        else if (element.getTagName().equals("owner")) header.setOwner(element.getTextContent());
        else if (element.getTagName().equals("description"))
          header.setDescription(element.getTextContent());
        else if (element.getTagName().equals("sets")) header.addSetInfos(parseSets(element));
        else if (element.getTagName().equals("measurements"))
          header.addMeasurementInfos(parseMeasurements(element));
        else if (element.getTagName().equals("annotations")) {
          Vector<Annotation> annotations = parseAnnotations(element);
          if (annotations != null)
            for (Annotation annotation : annotations) header.addAnnotation(annotation);
        }
      } catch (Exception e) {
        throw new XmlParserException(
            "Invalid value in header (" + element.getTagName() + "): '" + e.getMessage() + "'.");
      }
    }

    return header;
  }
 /*
  * If the element contains an attribute 'makeOnly' with a value of 'true',
  * create a child element before any existing children which will display a node
  * which will display only the elements records.
  * Compute the query attribute, which is the appended result of all of the children
  * appended to this element name. If noQuery=true. then do not generate a query term
  * for this element.
  */
 String computeQuery(Element e) {
   String query = "";
   if (!(e.getAttribute("noQuery").equalsIgnoreCase("true"))) {
     query = e.getAttribute("name");
   }
   String makeOnly = e.getAttribute("makeOnly");
   boolean madeOnly = false;
   NodeList children = e.getChildNodes();
   for (int i = 0; i < children.getLength(); i++) {
     Node child = children.item(i);
     if (child.getNodeType() == Node.ELEMENT_NODE) {
       if (makeOnly.equalsIgnoreCase("true") && !madeOnly) {
         // need to make an ...-Only node and populate it
         String onlyTagName = e.getTagName() + "-Only";
         Element only = ((Document) dom.getNode()).createElement(onlyTagName);
         only.setAttribute("name", e.getAttribute("name") + "-Only");
         only.setAttribute("query", e.getAttribute("name"));
         e.insertBefore(only, child);
         i++;
         madeOnly = true;
       }
       if (query.length() > 0) {
         query += ",";
       }
       query += computeQuery((Element) child);
     }
   }
   log.info("setting query for " + e.getNodeName() + "   " + query);
   e.setAttribute("query", query);
   return query;
 }
Beispiel #12
0
  private static MeasurementInfo parseMeasurement(Node parent) throws XmlParserException {
    String id = "";
    String label = "";
    String sampleid = "";
    Vector<FileInfo> files = null;
    Vector<ScanInfo> scans = null;

    NodeList nodes = parent.getChildNodes();
    for (int nodeid = 0; nodeid < nodes.getLength(); ++nodeid) {
      Node node = nodes.item(nodeid);
      if (node.getNodeType() != Node.ELEMENT_NODE) continue;

      Element element = (Element) node;
      if (element.getTagName().equals("id")) id = element.getTextContent();
      else if (element.getTagName().equals("label")) label = element.getTextContent();
      else if (element.getTagName().equals("sampleid")) sampleid = element.getTextContent();
      else if (element.getTagName().equals("scans")) scans = parseScans(node);
      else if (element.getTagName().equals("files")) files = parseFiles(node);
    }

    MeasurementInfo measurement = new MeasurementInfo(Integer.parseInt(id), sampleid);
    measurement.setLabel(label);
    measurement.addFileInfos(files);
    if (scans != null) measurement.addScanInfos(scans);

    return measurement;
  }
Beispiel #13
0
  private static SetInfo parseSet(Node parent) throws XmlParserException {
    String id = "";
    String type = "";
    String measurementids = null;

    NodeList nodes = parent.getChildNodes();
    Vector<SetInfo> sets = new Vector<SetInfo>();
    for (int nodeid = 0; nodeid < nodes.getLength(); ++nodeid) {
      Node node = nodes.item(nodeid);
      if (node.getNodeType() != Node.ELEMENT_NODE) continue;

      Element element = (Element) node;
      if (element.getTagName().equals("id")) id = element.getTextContent();
      else if (element.getTagName().equals("set")) sets.add(parseSet(element));
      else if (element.getTagName().equals("type")) type = element.getTextContent();
      else if (element.getTagName().equals("measurementids"))
        measurementids = element.getTextContent();
    }

    // create the set
    SetInfo set = new SetInfo(id, Integer.parseInt(type));
    if (measurementids != null) {
      int mids[] = ByteArray.toIntArray(Base64.decode(measurementids), ByteArray.ENDIAN_LITTLE, 32);
      for (int mid : mids) set.addMeasurementID(mid);
    }

    // add the children
    for (SetInfo s : sets) set.addChild(s);

    return set;
  }
Beispiel #14
0
  private LinkedHashMap[] obtenerMapeos(CliGol cliGol, NodeList variables, String[] excluye) {

    LinkedHashMap<String, Object> mapa = new LinkedHashMap<String, Object>();

    LinkedHashMap<String, String> puntos = new LinkedHashMap<String, String>();

    List<String> ex = Arrays.asList(excluye);

    for (int i = 0; i < variables.getLength(); i++) {

      String nom = variables.item(i).getNodeName();

      if (!ex.contains(nom)) {

        String golMapdijo = GolMap.xmlGol(nom);

        String val = null;
        if (golMapdijo != null) {
          val = buscaValEnCli(golMapdijo, cliGol);
          mapa.put(nom, val);

          puntos.put(nom, variables.item(i).getTextContent());
        }
      }
    }

    return new LinkedHashMap[] {mapa, puntos};
  }
 public static final Map parseFrame(Node node) {
   NodeList bones = node.getChildNodes();
   Map bone_infos = new HashMap();
   for (int i = 0; i < bones.getLength(); i++) {
     Node bone = bones.item(i);
     if (bone.getNodeName().equals("transform")) {
       String name = bone.getAttributes().getNamedItem("name").getNodeValue();
       float[] matrix = new float[16];
       matrix[0 * 4 + 0] = getAttrFloat(bone, "m00");
       matrix[0 * 4 + 1] = getAttrFloat(bone, "m01");
       matrix[0 * 4 + 2] = getAttrFloat(bone, "m02");
       matrix[0 * 4 + 3] = getAttrFloat(bone, "m03");
       matrix[1 * 4 + 0] = getAttrFloat(bone, "m10");
       matrix[1 * 4 + 1] = getAttrFloat(bone, "m11");
       matrix[1 * 4 + 2] = getAttrFloat(bone, "m12");
       matrix[1 * 4 + 3] = getAttrFloat(bone, "m13");
       matrix[2 * 4 + 0] = getAttrFloat(bone, "m20");
       matrix[2 * 4 + 1] = getAttrFloat(bone, "m21");
       matrix[2 * 4 + 2] = getAttrFloat(bone, "m22");
       matrix[2 * 4 + 3] = getAttrFloat(bone, "m23");
       matrix[3 * 4 + 0] = getAttrFloat(bone, "m30");
       matrix[3 * 4 + 1] = getAttrFloat(bone, "m31");
       matrix[3 * 4 + 2] = getAttrFloat(bone, "m32");
       matrix[3 * 4 + 3] = getAttrFloat(bone, "m33");
       bone_infos.put(name, matrix);
     }
   }
   return bone_infos;
 }
Beispiel #16
0
 public static void traverseAMLforObjectNames(
     HashMap partialMap, Node currentNode, HashMap ObjDef_LinkId, HashMap ModelId_ModelType) {
   if (currentNode.hasChildNodes()) {
     for (int i = 0; i < currentNode.getChildNodes().getLength(); i++) {
       Node currentChild = currentNode.getChildNodes().item(i);
       if (currentChild.getNodeName().equals("Group")) {
         traverseAMLforObjectNames(partialMap, currentChild, ObjDef_LinkId, ModelId_ModelType);
       }
       if (currentChild.getNodeName().equals("Model")) {
         if (currentChild.hasAttributes()) {
           String mid = currentChild.getAttributes().getNamedItem("Model.ID").getNodeValue();
           String type = currentChild.getAttributes().getNamedItem("Model.Type").getNodeValue();
           ModelId_ModelType.put(mid, type);
         }
         // traverseAMLforObjectNames(partialMap, currentChild,
         // ObjDef_LinkId);
       }
       if (currentChild.getNodeName().equals("ObjDef")) {
         String id = currentChild.getAttributes().getNamedItem("ObjDef.ID").getNodeValue();
         NodeList currentChildren = currentChild.getChildNodes();
         String ObjName = "";
         for (int k = 0; k < currentChildren.getLength(); k++) {
           Node Child = currentChildren.item(k);
           if (!Child.getNodeName().equals("AttrDef")) {
             continue;
           } else if (!Child.getAttributes()
               .getNamedItem("AttrDef.Type")
               .getNodeValue()
               .equals("AT_NAME")) {
             continue;
           } else if (Child.hasChildNodes()) {
             for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
               if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
                 continue;
               } else {
                 ObjName = getTextContent(Child.getChildNodes().item(l));
                 ObjName = ObjName.replaceAll("\n", "\\\\n");
                 break;
               }
             }
           }
         }
         partialMap.put(id, ObjName);
         for (int j = 0; j < currentChild.getAttributes().getLength(); j++) {
           if (currentChild.getAttributes().item(j).getNodeName().equals("LinkedModels.IdRefs")) {
             String links =
                 currentChild.getAttributes().getNamedItem("LinkedModels.IdRefs").getNodeValue();
             /*
              * if (links.indexOf(" ") > -1) {
              * Message.add("yes, yes, yes"); links =
              * links.substring(0, links.indexOf(" ")); }
              */
             ObjDef_LinkId.put(id, links);
           }
         }
       }
     }
   }
 }
 private Element getElement(String eltName) {
   NodeList nodeList = docElt.getElementsByTagName(eltName);
   if (nodeList.getLength() != 0) {
     Node node = nodeList.item(0);
     if (node instanceof Element) return (Element) node;
   }
   return null;
 }
 public static Element recuperarHijo(Element esteNodo, String tag) {
   Element xmlElement = null;
   if (esteNodo != null) {
     NodeList listaElem = esteNodo.getElementsByTagName(tag);
     if (listaElem != null) xmlElement = (Element) listaElem.item(0);
   }
   return xmlElement;
 }
Beispiel #19
0
 void lookup(String text) {
   NodeList nl = DOMInfoExtractor.locateNodes(document, ".//text()[contains(.,'" + text + "')]");
   System.out.println("find " + nl.getLength() + " items");
   FoundItem[] fis = new FoundItem[nl.getLength()];
   for (int i = 0; i < nl.getLength(); i++) {
     fis[i] = getFoundItem(nl.item(i), text);
   }
   foundList.setListData(fis);
 }
Beispiel #20
0
 private void removeNodes(NodeList nl) {
   int count = nl.getLength();
   for (int i = 0; i < count; i++) {
     Node node = nl.item(i);
     Node parent = node.getParentNode();
     if (parent == null) continue;
     parent.removeChild(node);
   }
 }
 public Vector getNodes(Element padre) {
   Vector vectorNode = new Vector();
   NodeList nodeList = padre.getChildNodes();
   for (int i = 0; i < nodeList.getLength(); i++) {
     Node node = nodeList.item(i);
     if (node.getNodeType() == Node.ELEMENT_NODE) vectorNode.add(node);
   }
   return vectorNode;
 }
Beispiel #22
0
 /**
  * Honey, can you just check on the kids? Thanks.
  *
  * <p>Internal function; not included in reference.
  */
 protected void checkChildren() {
   if (children == null) {
     NodeList kids = node.getChildNodes();
     int childCount = kids.getLength();
     children = new XML[childCount];
     for (int i = 0; i < childCount; i++) {
       children[i] = new XML(this, kids.item(i));
     }
   }
 }
 public static Vector recuperarHojasAsVector(Element esteNodo, String tag) {
   NodeList listaElem = esteNodo.getElementsByTagName(tag);
   Vector vector = new Vector();
   for (int i = 0; i < listaElem.getLength(); i++) {
     Element xmlElement = (Element) listaElem.item(i);
     Node xmlHoja = (Node) xmlElement.getChildNodes().item(0);
     vector.addElement(xmlHoja.getNodeValue());
   }
   return vector;
 }
Beispiel #24
0
  /**
   * Carries out preprocessing that makes JEuclid handle the document better.
   *
   * @param doc Document
   */
  static void preprocessForJEuclid(Document doc) {
    // underbrace and overbrace
    NodeList list = doc.getElementsByTagName("mo");
    for (int i = 0; i < list.getLength(); i++) {
      Element mo = (Element) list.item(i);
      String parentName = ((Element) mo.getParentNode()).getTagName();
      if (parentName == null) {
        continue;
      }
      if (parentName.equals("munder") && isTextChild(mo, "\ufe38")) {
        mo.setAttribute("stretchy", "true");
        mo.removeChild(mo.getFirstChild());
        mo.appendChild(doc.createTextNode("\u23df"));
      } else if (parentName.equals("mover") && isTextChild(mo, "\ufe37")) {
        mo.setAttribute("stretchy", "true");
        mo.removeChild(mo.getFirstChild());
        mo.appendChild(doc.createTextNode("\u23de"));
      }
    }

    // menclose for long division doesn't allow enough top padding. Oh, and
    // <mpadded> isn't implemented. And there isn't enough padding to left of
    // the bar either. Solve by adding an <mover> with just an <mspace> over#
    // the longdiv, contained within an mrow that adds a <mspace> before it.
    list = doc.getElementsByTagName("menclose");
    for (int i = 0; i < list.getLength(); i++) {
      Element menclose = (Element) list.item(i);
      // Only for longdiv
      if (!"longdiv".equals(menclose.getAttribute("notation"))) {
        continue;
      }
      Element mrow = doc.createElementNS(WebMathsService.NS, "mrow");
      Element mover = doc.createElementNS(WebMathsService.NS, "mover");
      Element mspace = doc.createElementNS(WebMathsService.NS, "mspace");
      Element mspaceW = doc.createElementNS(WebMathsService.NS, "mspace");
      boolean previousElement = false;
      for (Node previous = menclose.getPreviousSibling();
          previous != null;
          previous = previous.getPreviousSibling()) {
        if (previous.getNodeType() == Node.ELEMENT_NODE) {
          previousElement = true;
          break;
        }
      }
      if (previousElement) {
        mspaceW.setAttribute("width", "4px");
      }
      menclose.getParentNode().insertBefore(mrow, menclose);
      menclose.getParentNode().removeChild(menclose);
      mrow.appendChild(mspaceW);
      mrow.appendChild(mover);
      mover.appendChild(menclose);
      mover.appendChild(mspace);
    }
  }
Beispiel #25
0
  /**
   * ** Gets a virtual DBRecord from the specified remote service ** @param servReq The remote web
   * service ** @return The virtual DBRecord (cannot be saved or reloaded)
   */
  @SuppressWarnings("unchecked")
  public gDBR getVirtualDBRecord(final ServiceRequest servReq) throws DBException {
    String CMD_dbget = DBFactory.CMD_dbget;
    String TAG_Response = servReq.getTagResponse();
    String TAG_Record = DBFactory.TAG_Record;
    String ATTR_command = servReq.getAttrCommand();
    String ATTR_result = servReq.getAttrResult();

    /* send request / get response */
    Document xmlDoc = null;
    try {
      xmlDoc =
          servReq.sendRequest(
              CMD_dbget,
              new ServiceRequest.RequestBody() {
                public StringBuffer appendRequestBody(StringBuffer sb, int indent) {
                  return DBRecordKey.this.toRequestXML(sb, indent);
                }
              });
    } catch (IOException ioe) {
      Print.logException("Error", ioe);
      throw new DBException("Request read error", ioe);
    }

    /* parse 'GTSResponse' */
    Element gtsResponse = xmlDoc.getDocumentElement();
    if (!gtsResponse.getTagName().equalsIgnoreCase(TAG_Response)) {
      Print.logError("Request XML does not start with '%s'", TAG_Response);
      throw new DBException("Response XML does not begin eith '" + TAG_Response + "'");
    }

    /* request command/argument */
    String cmd = StringTools.trim(gtsResponse.getAttribute(ATTR_command));
    String result = StringTools.trim(gtsResponse.getAttribute(ATTR_result));
    if (StringTools.isBlank(result)) {
      result = StringTools.trim(gtsResponse.getAttribute("type"));
    }
    if (!result.equalsIgnoreCase("success")) {
      Print.logError("Response indicates failure");
      throw new DBException("Response does not indicate 'success'");
    }

    /* Record */
    NodeList rcdList = XMLTools.getChildElements(gtsResponse, TAG_Record);
    if (rcdList.getLength() <= 0) {
      Print.logError("No 'Record' tags");
      throw new DBException("GTSResponse does not contain any 'Record' tags");
    }
    Element rcdElem = (Element) rcdList.item(0);

    /* return DBRecord */
    gDBR dbr = (gDBR) DBFactory.parseXML_DBRecord(rcdElem);
    dbr.setVirtual(true);
    return dbr;
  }
 private static Collection<Node> getNodeMatching(Node body, String regexp) {
   final Collection<Node> nodes = new ArrayList<>();
   if (body.getNodeName().matches(regexp)) nodes.add(body);
   if (body.getChildNodes().getLength() == 0) return nodes;
   NodeList returnList = body.getChildNodes();
   for (int k = 0; k < returnList.getLength(); k++) {
     final Node node = returnList.item(k);
     nodes.addAll(getNodeMatching(node, regexp));
   }
   return nodes;
 }
Beispiel #27
0
 private static boolean isTextChild(Node parent, String text) {
   NodeList list = parent.getChildNodes();
   if (list.getLength() != 1) {
     return false;
   }
   Node child = list.item(0);
   if (child.getNodeType() != Node.TEXT_NODE) {
     return false;
   }
   return child.getNodeValue().equals(text);
 }
Beispiel #28
0
 public String getProperty(String pPropertyName) {
   String propertyValue = null;
   NodeList nodeList = mConfigFileDocument.getElementsByTagName(pPropertyName);
   int nodeListLength = nodeList.getLength();
   if (nodeListLength > 0) {
     Node firstChildNode = nodeList.item(nodeListLength - 1).getFirstChild();
     if (null != firstChildNode) {
       propertyValue = firstChildNode.getNodeValue();
     }
   }
   return (propertyValue);
 }
Beispiel #29
0
 private void appendXmlEntry(Document doc, Node opAppend) {
   NodeList targetNodes = findNodes(doc, opAppend);
   NodeList valueNodes = getValueNodes(opAppend);
   if (targetNodes == null) {
     return;
   }
   int targetNodesCount = targetNodes.getLength();
   for (int i = 0; i < targetNodesCount; i++) {
     Node target = targetNodes.item(i);
     appendNodes(doc, target, valueNodes);
   }
 }
Beispiel #30
0
  private static void parseIPeak(Node parent, IPeak peak) throws XmlParserException {
    // retrieve all the properties
    int scan = -1;
    double retentiontime = -1;
    double mass = -1;
    double intensity = -1;
    int patternid = -1;
    int measurementid = -1;
    //		String sha1 = null;
    Vector<Annotation> annotations = null;

    NodeList nodes = parent.getChildNodes();
    for (int nodeid = 0; nodeid < nodes.getLength(); ++nodeid) {
      Node node = nodes.item(nodeid);
      if (node.getNodeType() != Node.ELEMENT_NODE) continue;

      Element element = (Element) node;
      if (element.getTagName().equals("patternid"))
        patternid = Integer.parseInt(element.getTextContent());
      else if (element.getTagName().equals("measurementid"))
        measurementid = Integer.parseInt(element.getTextContent());
      else if (element.getTagName().equals("annotations")) annotations = parseAnnotations(element);
      else if (element.getTagName().equals("scan"))
        scan = Integer.parseInt(element.getTextContent());
      else if (element.getTagName().equals("retentiontime"))
        retentiontime = Double.parseDouble(element.getTextContent());
      else if (element.getTagName().equals("mass"))
        mass = Double.parseDouble(element.getTextContent());
      else if (element.getTagName().equals("intensity"))
        intensity = Double.parseDouble(element.getTextContent());
      //			else if (element.getTagName().equals("sha1sum"))
      //				sha1 = element.getTextContent();
    }

    // check whether obligatory values are missing
    if (mass == -1 || intensity == -1)
      throw new XmlParserException("Mass and/or intensity information is missing for IPeak.");

    peak.setScanID(scan);
    peak.setRetentionTime(retentiontime);
    peak.setMass(mass);
    peak.setIntensity(intensity);
    peak.setPatternID(patternid);
    peak.setMeasurementID(measurementid);

    if (annotations != null)
      for (Annotation annotation : annotations) peak.addAnnotation(annotation);

    // check whether
    //		if (sha1!=null && !sha1.equals(peak.sha1()))
    //			throw new XmlParserException("SHA1-sum for individual ipeak element does not match.");
  }