/** Compares our trees, and triggers repairs for any ranges that mismatch. */
      public void run() {
        InetAddress local = FBUtilities.getLocalAddress();

        // restore partitioners (in case we were serialized)
        if (ltree.partitioner() == null) ltree.partitioner(StorageService.getPartitioner());
        if (rtree.partitioner() == null) rtree.partitioner(StorageService.getPartitioner());

        // compare trees, and collect differences
        differences.addAll(MerkleTree.difference(ltree, rtree));

        // choose a repair method based on the significance of the difference
        String format =
            "Endpoints " + local + " and " + remote + " %s for " + cfname + " on " + range;
        if (differences.isEmpty()) {
          logger.info(String.format(format, "are consistent"));
          completed(remote, cfname);
          return;
        }

        // non-0 difference: perform streaming repair
        logger.info(String.format(format, "have " + differences.size() + " range(s) out of sync"));
        try {
          performStreamingRepair();
        } catch (IOException e) {
          throw new RuntimeException(e);
        }
      }
 public static boolean testCommand(
     final Context context,
     final String command,
     final String contains,
     final List<String> arguments) {
   try {
     final List<String> commandAndArgs = new ArrayList<String>();
     commandAndArgs.add(command);
     commandAndArgs.addAll(arguments);
     final ProcessBuilder pb = new ProcessBuilder(commandAndArgs);
     logCommand(context, pb);
     final Process compilation = pb.start();
     final ConsumeStream result = ConsumeStream.start(compilation.getInputStream(), null);
     final ConsumeStream error = ConsumeStream.start(compilation.getErrorStream(), null);
     compilation.waitFor();
     result.join();
     error.join();
     return error.output.toString().contains(contains)
         || result.output.toString().contains(contains);
   } catch (IOException ex) {
     context.log(ex.getMessage());
     return false;
   } catch (InterruptedException ex) {
     context.log(ex.getMessage());
     return false;
   }
 }
  // Deze method maakt alle types activities aan
  public void makeActivities() {
    for (Course course : courses) {
      activities.addAll(createActivity(course, course.numberLectures, 0, "Hoorcollege", true));
      activities.addAll(
          createActivity(
              course, course.numberWorkGroups, course.maxStudentsGroups, "Werkcollege", false));
      activities.addAll(
          createActivity(
              course, course.numberPracticum, course.maxStudentsPracticum, "Practicum", false));
    }

    /*
    //Print alle Activities met bijbehorende studentnummers van studenten
    for (int i = 0; i < activities.size(); i++) {

        //Stukje code die studentNumber uit lijst van Student extraheert
        List studentList = activities.get(i).studentGroup;
        List<Integer> studentNumberList = new ArrayList<>();
        int studentNumber;
        for (int x = 0; x < studentList.size(); x++) {

            Student thisStudent = (Student) studentList.get(x);
            studentNumber = thisStudent.studentNumber;
            studentNumberList.add(studentNumber);
        }

       System.out.println(activities.get(i).course.name + " | Aantal " + activities.get(i).activity + ": " +
       activities.get(i).occurrence + " | Groep: " + activities.get(i).groupNumber + " | Aantal studenten: " + activities.get(i).studentGroup.size() + " | Studentnummers: " +
       studentNumberList);
    }
    */

    // System.out.println("Aantal Activities: " + activities.size());
  }
Beispiel #4
0
  void test(String[] opts, String className) throws Exception {
    count++;
    System.err.println("Test " + count + " " + Arrays.asList(opts) + " " + className);
    Path testSrcDir = Paths.get(System.getProperty("test.src"));
    Path testClassesDir = Paths.get(System.getProperty("test.classes"));
    Path classes = Paths.get("classes." + count);
    classes.createDirectory();

    Context ctx = new Context();
    PathFileManager fm = new JavacPathFileManager(ctx, true, null);
    JavaCompiler compiler = ToolProvider.getSystemJavaCompiler();
    List<String> options = new ArrayList<String>();
    options.addAll(Arrays.asList(opts));
    options.addAll(Arrays.asList("-verbose", "-XDverboseCompilePolicy", "-d", classes.toString()));
    Iterable<? extends JavaFileObject> compilationUnits =
        fm.getJavaFileObjects(testSrcDir.resolve(className + ".java"));
    StringWriter sw = new StringWriter();
    PrintWriter out = new PrintWriter(sw);
    JavaCompiler.CompilationTask t =
        compiler.getTask(out, fm, null, options, null, compilationUnits);
    boolean ok = t.call();
    System.err.println(sw.toString());
    if (!ok) {
      throw new Exception("compilation failed");
    }

    File expect = new File("classes." + count + "/" + className + ".class");
    if (!expect.exists()) throw new Exception("expected file not found: " + expect);
    long expectedSize = new File(testClassesDir.toString(), className + ".class").length();
    long actualSize = expect.length();
    if (expectedSize != actualSize)
      throw new Exception("wrong size found: " + actualSize + "; expected: " + expectedSize);
  }
  /**
   * Return a List of SA Fields for all the java fields in this class, including all inherited
   * fields. This includes hidden fields. Thus the returned list can contain fields with the same
   * name. Return an empty list if there are no fields. Only designed for use in a debugging system.
   */
  public List getAllFields() {
    // Contains a Field for each field in this class, including immediate
    // fields and inherited fields.
    List allFields = getImmediateFields();

    // transitiveInterfaces contains all interfaces implemented
    // by this class and its superclass chain with no duplicates.

    ObjArray interfaces = getTransitiveInterfaces();
    int n = (int) interfaces.getLength();
    for (int i = 0; i < n; i++) {
      InstanceKlass intf1 = (InstanceKlass) interfaces.getObjAt(i);
      if (Assert.ASSERTS_ENABLED) {
        Assert.that(intf1.isInterface(), "just checking type");
      }
      allFields.addAll(intf1.getImmediateFields());
    }

    // Get all fields in the superclass, recursively.  But, don't
    // include fields in interfaces implemented by superclasses;
    // we already have all those.
    if (!isInterface()) {
      InstanceKlass supr;
      if ((supr = (InstanceKlass) getSuper()) != null) {
        allFields.addAll(supr.getImmediateFields());
      }
    }

    return allFields;
  }
  public static void readExternal(
      final Element element,
      final List<ShelvedChangeList> changes,
      final List<ShelvedChangeList> recycled)
      throws InvalidDataException {
    changes.addAll(ShelvedChangeList.readChanges(element, false, true));

    recycled.addAll(ShelvedChangeList.readChanges(element, true, true));
  }
 @Override
 public List<String> getCandidates(String word) {
   List<String> suggestions = new ArrayList<>();
   List<List<String>> partList = splitter.getAllSplits(word);
   List<String> candidates = new ArrayList<>();
   for (List<String> parts : partList) {
     candidates.addAll(super.getCandidates(parts));
   }
   suggestions.addAll(candidates);
   return suggestions;
 }
Beispiel #8
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 @Override
 public List<DecompilerBasicBlock> getAllBasicBlocks() {
   List<DecompilerBasicBlock> blocks = new ArrayList<>();
   blocks.add(head);
   for (DecompilerBlock b : thenBranch) {
     blocks.addAll(b.getAllBasicBlocks());
   }
   for (DecompilerBlock b : elseBranch) {
     blocks.addAll(b.getAllBasicBlocks());
   }
   return blocks;
 }
Beispiel #9
0
 public static File[] getDirectoryListing(File dir) {
   SortedSet<File> dirSet = new TreeSet<File>();
   SortedSet<File> fileSet = new TreeSet<File>();
   File[] files = dir.listFiles();
   for (int i = 0; i < files.length; i++) {
     if (files[i].isDirectory()) dirSet.add(files[i]);
     else fileSet.add(files[i]);
   }
   List<File> fileList = new LinkedList<File>();
   fileList.addAll(dirSet);
   fileList.addAll(fileSet);
   return fileList.toArray(new File[] {});
 }
 private BundleInfo[] orderingInitialConfig(List setToInitialConfig) {
   List notToBeStarted = new LinkedList();
   List toBeStarted = new LinkedList();
   for (Iterator ite2 = setToInitialConfig.iterator(); ite2.hasNext(); ) {
     BundleInfo bInfo = (BundleInfo) ite2.next();
     if (bInfo.isMarkedAsStarted()) toBeStarted.add(bInfo);
     else notToBeStarted.add(bInfo);
   }
   setToInitialConfig.clear();
   setToInitialConfig.addAll(notToBeStarted);
   setToInitialConfig.addAll(toBeStarted);
   return Utils.getBundleInfosFromList(setToInitialConfig);
 }
Beispiel #11
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 private static <T> Pair<List<T>, List<T>> splitData(List<T> original, double splitForSecond) {
   List<T> first = new ArrayList<>();
   List<T> second = new ArrayList<>();
   if (splitForSecond > 0.0) {
     Collections.shuffle(original, new Random(0L));
     int numFirst = (int) ((1.0 - splitForSecond) * original.size());
     first.addAll(original.subList(0, numFirst));
     second.addAll(original.subList(numFirst, original.size()));
   } else {
     first.addAll(original);
     // second stays empty
   }
   return Tuples.pair(first, second);
 }
Beispiel #12
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 private static List<? extends StaticError> flattenErrors(Iterable<? extends StaticError> ex) {
   List<StaticError> result = new LinkedList<StaticError>();
   for (StaticError err : ex) {
     result.addAll(flattenErrors(err));
   }
   return result;
 }
  /**
   * Method removes a Spring bean definition from the XML application context file. Bean definition
   * is identified by its id or bean name.
   *
   * @param project
   * @param id
   */
  public void removeBeanDefinition(File configFile, Project project, String id) {
    Source xsltSource;
    Source xmlSource;
    try {
      xsltSource =
          new StreamSource(new ClassPathResource("transform/delete-bean.xsl").getInputStream());
      xsltSource.setSystemId("delete-bean");

      List<File> configFiles = new ArrayList<>();
      configFiles.add(configFile);
      configFiles.addAll(getConfigImports(configFile, project));

      for (File file : configFiles) {
        xmlSource = new StringSource(FileUtils.readToString(new FileInputStream(configFile)));

        // create transformer
        Transformer transformer = transformerFactory.newTransformer(xsltSource);
        transformer.setParameter("bean_id", id);

        // transform
        StringResult result = new StringResult();
        transformer.transform(xmlSource, result);
        FileUtils.writeToFile(format(result.toString(), project.getSettings().getTabSize()), file);
        return;
      }
    } catch (IOException e) {
      throw new ApplicationRuntimeException(UNABLE_TO_READ_TRANSFORMATION_SOURCE, e);
    } catch (TransformerException e) {
      throw new ApplicationRuntimeException(FAILED_TO_UPDATE_BEAN_DEFINITION, e);
    }
  }
Beispiel #14
0
 public String _path(String args[]) {
   List<String> list = new ArrayList<String>();
   for (int i = 1; i < args.length; i++) {
     list.addAll(Processor.split(args[i]));
   }
   return Processor.join(list, File.pathSeparator);
 }
Beispiel #15
0
 /** Finds the lexical items used to produce the highest scoring parse. */
 public List getMaxLexEntries() {
   List result = new LinkedList();
   for (ParseResult p : bestParses) {
     result.addAll(p.getLexEntries());
   }
   return result;
 }
Beispiel #16
0
 /** Finds the lexical items used to produce the highest scoring parse with semantics sem. */
 public List getMaxLexEntriesFor(Exp sem) {
   List result = new LinkedList();
   for (ParseResult p : findBestParses(allParses, sem)) {
     result.addAll(p.getLexEntries());
   }
   return result;
 }
Beispiel #17
0
  private static List<String> calcVCFGenotypeKeys(VariantContext vc) {
    Set<String> keys = new HashSet<String>();

    boolean sawGoodGT = false;
    boolean sawGoodQual = false;
    boolean sawGenotypeFilter = false;
    for (Genotype g : vc.getGenotypes().values()) {
      keys.addAll(g.getAttributes().keySet());
      if (g.isAvailable()) sawGoodGT = true;
      if (g.hasNegLog10PError()) sawGoodQual = true;
      if (g.isFiltered() && g.isCalled()) sawGenotypeFilter = true;
    }

    if (sawGoodQual) keys.add(VCFConstants.GENOTYPE_QUALITY_KEY);

    if (sawGenotypeFilter) keys.add(VCFConstants.GENOTYPE_FILTER_KEY);

    List<String> sortedList = ParsingUtils.sortList(new ArrayList<String>(keys));

    // make sure the GT is first
    if (sawGoodGT) {
      List<String> newList = new ArrayList<String>(sortedList.size() + 1);
      newList.add(VCFConstants.GENOTYPE_KEY);
      newList.addAll(sortedList);
      sortedList = newList;
    }

    return sortedList;
  }
  /** Loads streamhost address and ports from the proxies on the local server. */
  private void initStreamHosts() {
    List<Bytestream.StreamHost> streamHosts = new ArrayList<Bytestream.StreamHost>();
    Iterator it = proxies.iterator();
    IQ query;
    PacketCollector collector;
    Bytestream response;
    while (it.hasNext()) {
      String jid = it.next().toString();
      query =
          new IQ() {
            public String getChildElementXML() {
              return "<query xmlns=\"http://jabber.org/protocol/bytestreams\"/>";
            }
          };
      query.setType(IQ.Type.GET);
      query.setTo(jid);

      collector = connection.createPacketCollector(new PacketIDFilter(query.getPacketID()));
      connection.sendPacket(query);

      response = (Bytestream) collector.nextResult(SmackConfiguration.getPacketReplyTimeout());
      if (response != null) {
        streamHosts.addAll(response.getStreamHosts());
      }
      collector.cancel();
    }
    this.streamHosts = streamHosts;
  }
 /**
  * Obtain a new Node from a type that matches the given string. It will try to correctly detect
  * RealVar and constant nodes. The Node is cloned and initialized, so it can be used separatedly
  *
  * @param name The type of the requested Node. It must coincide with one of the class names of
  *     available Nodes, unless it represents a variable or constant terminal
  * @param currentGlobalDepth The depth of the requested Node in the Tree
  */
 public Node newNode(String name, int currentGlobalDepth) {
   System.out.println(name);
   Node outNode = null;
   if (name.startsWith("X")) {
     outNode = new RealVar(Integer.parseInt(name.substring("X".length(), name.length())));
   } else if (name.startsWith("angle")) {
     outNode = new Angle(Integer.parseInt(name.substring("angle".length(), name.length())));
   } else if (name.substring(0, 1).matches("\\d")) {
     outNode = new RealConstant(Double.parseDouble(name));
   } else if (name.equals("true")) {
     outNode = new LogicConstant(1);
   } else if (name.equals("false")) {
     outNode = new LogicConstant(0);
   } else {
     List<Node> all = new ArrayList<Node>();
     for (int i = 0; i < nodeSets.length; i++) {
       all.addAll(nodeSets[i].getAll());
     }
     for (Node n : all) {
       if (name.equals(n.name())) {
         try {
           outNode = (Node) n.clone();
         } catch (CloneNotSupportedException e) {
           Logger.log(e);
         }
         break;
       }
     }
   }
   outNode.setCurrentDepth(currentGlobalDepth);
   return outNode;
 }
 public List<TreeNode> getChildren() {
   List<TreeNode> lst = new ArrayList<TreeNode>();
   for (List<TreeNodeImpl> lst1 : childs.values()) {
     lst.addAll(lst1);
   }
   return lst;
 }
 ActiveFile(File f, List<Thread> list) {
   file = f;
   if (list != null) {
     threads.addAll(list);
   }
   threads.add(Thread.currentThread());
 }
 public static Either<CommandResult> runCommand(
     final Context context, final String command, final File path, final List<String> arguments) {
   try {
     final List<String> commandAndArgs = new ArrayList<String>();
     commandAndArgs.add(command);
     commandAndArgs.addAll(arguments);
     final ProcessBuilder pb = new ProcessBuilder(commandAndArgs);
     if (path != null) {
       pb.directory(path);
     }
     logCommand(context, pb);
     final Process compilation = pb.start();
     final ConsumeStream result = ConsumeStream.start(compilation.getInputStream(), context);
     final ConsumeStream error = ConsumeStream.start(compilation.getErrorStream(), context);
     final int exitCode = compilation.waitFor();
     result.join();
     error.join();
     if (result.exception != null) {
       return Either.fail(result.exception);
     }
     if (error.exception != null) {
       return Either.fail(error.exception);
     }
     return Either.success(
         new CommandResult(result.output.toString(), error.output.toString(), exitCode));
   } catch (IOException ex) {
     return Either.fail(ex);
   } catch (InterruptedException ex) {
     return Either.fail(ex);
   }
 }
  public boolean avrdude(Collection params) throws RunnerException {
    List commandDownloader = new ArrayList();
    commandDownloader.add("avrdude");

    // Point avrdude at its config file since it's in a non-standard location.
    if (Base.isMacOS()) {
      commandDownloader.add("-C" + "hardware/tools/avr/etc/avrdude.conf");
    } else if (Base.isWindows()) {
      String userdir = System.getProperty("user.dir") + File.separator;
      commandDownloader.add("-C" + userdir + "hardware/tools/avr/etc/avrdude.conf");
    } else {
      // ???: is it better to have Linux users install avrdude themselves, in
      // a way that it can find its own configuration file?
      commandDownloader.add("-C" + "hardware/tools/avrdude.conf");
    }

    if (Preferences.getBoolean("upload.verbose")) {
      commandDownloader.add("-v");
      commandDownloader.add("-v");
      commandDownloader.add("-v");
      commandDownloader.add("-v");
    } else {
      commandDownloader.add("-q");
      commandDownloader.add("-q");
    }
    // XXX: quick hack to chop the "atmega" off of "atmega8" and "atmega168",
    // then shove an "m" at the beginning.  won't work for attiny's, etc.
    commandDownloader.add(
        "-pm" + Preferences.get("boards." + Preferences.get("board") + ".build.mcu").substring(6));
    commandDownloader.addAll(params);

    return executeUploadCommand(commandDownloader);
  }
Beispiel #24
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 private static List<? extends StaticError> flattenErrors(StaticError ex) {
   List<StaticError> result = new LinkedList<StaticError>();
   if (ex instanceof MultipleStaticError) {
     for (StaticError err : (MultipleStaticError) ex) result.addAll(flattenErrors(err));
   } else result.add(new WrappedException(ex, Debug.stackTraceOn()));
   return result;
 }
Beispiel #25
0
  // Ast0.Block ---
  // Ast0.Stmt[] stmts;
  //
  // AG:
  //   code: {stmt.c}
  //
  static List<IR0.Inst> gen(Ast0.Block n) throws Exception {
    List<IR0.Inst> code = new ArrayList<IR0.Inst>();

    // ... need code ...
    for (Ast0.Stmt s : n.stmts) code.addAll(gen(s));
    return code;
  }
Beispiel #26
0
  public static List<Library> list(File folder) {
    List<Library> libraries = new ArrayList<Library>();
    List<File> librariesFolders = new ArrayList<File>();
    librariesFolders.addAll(discover(folder));

    for (File baseFolder : librariesFolders) {
      libraries.add(new Library(baseFolder));
    }

    // Support libraries inside of one level of subfolders? I believe this was
    // the compromise for supporting library groups, but probably a bad idea
    // because it's not compatible with the Manager.
    String[] folderNames = folder.list(junkFolderFilter);
    if (folderNames != null) {
      for (String subfolderName : folderNames) {
        File subfolder = new File(folder, subfolderName);

        if (!librariesFolders.contains(subfolder)) {
          List<File> discoveredLibFolders = discover(subfolder);
          for (File discoveredFolder : discoveredLibFolders) {
            libraries.add(new Library(discoveredFolder, subfolderName));
          }
        }
      }
    }
    return libraries;
  }
Beispiel #27
0
 // look up and apply coarts for given rels to each sign in result
 private void applyCoarts(List<String> coartRels, Collection<Sign> result) {
   List<Sign> inputSigns = new ArrayList<Sign>(result);
   result.clear();
   List<Sign> outputSigns = new ArrayList<Sign>(inputSigns.size());
   // for each rel, lookup coarts and apply to input signs, storing results in output signs
   for (Iterator<String> it = coartRels.iterator(); it.hasNext(); ) {
     String rel = it.next();
     Collection<String> preds = (Collection<String>) _coartRelsToPreds.get(rel);
     if (preds == null) continue; // not expected
     Collection<Sign> coartResult = getSignsFromRelAndPreds(rel, preds);
     if (coartResult == null) continue;
     for (Iterator<Sign> it2 = coartResult.iterator(); it2.hasNext(); ) {
       Sign coartSign = it2.next();
       // apply to each input
       for (int j = 0; j < inputSigns.size(); j++) {
         Sign sign = inputSigns.get(j);
         grammar.rules.applyCoart(sign, coartSign, outputSigns);
       }
     }
     // switch output to input for next iteration
     inputSigns.clear();
     inputSigns.addAll(outputSigns);
     outputSigns.clear();
   }
   // add results back
   result.addAll(inputSigns);
 }
Beispiel #28
0
  private void insertAfter(JPegStmt node, JPegStmt after) {
    // System.out.println("node: "+node);
    // System.out.println("after: "+after);
    //		System.out.println("succs of node: "+getSuccsOf(node));

    // this must be done first because the succs of node will be chanaged lately
    List succOfAfter = new ArrayList();
    succOfAfter.addAll(getSuccsOf(node));
    unitToSuccs.put(after, succOfAfter);

    Iterator succsIt = getSuccsOf(node).iterator();
    while (succsIt.hasNext()) {
      Object succ = succsIt.next();
      List pred = getPredsOf(succ);
      pred.remove(node);
      pred.add(after);
    }

    List succOfNode = new ArrayList();
    succOfNode.add(after);
    unitToSuccs.put(node, succOfNode);

    List predOfAfter = new ArrayList();
    predOfAfter.add(node);
    unitToPreds.put(after, predOfAfter);

    //	buildPredecessor(Chain pegChain);
  }
Beispiel #29
0
  /*
   * return 0 is success, otherwise failure
   */
  public final int runAdminCommandOnRemoteNode(
      Node thisNode, StringBuilder output, List<String> args, List<String> stdinLines)
      throws SSHCommandExecutionException, IllegalArgumentException, UnsupportedOperationException {

    String humanreadable = null;
    try {
      this.node = thisNode;
      dcomInfo = new DcomInfo(node);
      List<String> fullcommand = new ArrayList<String>();
      WindowsRemoteAsadmin asadmin = dcomInfo.getAsadmin();

      if (stdinLines != null && !stdinLines.isEmpty()) setupAuthTokenFile(fullcommand, stdinLines);

      fullcommand.addAll(args);
      humanreadable = dcomInfo.getNadminPath() + " " + commandListToString(fullcommand);

      // This is where the rubber meets the road...
      String out = asadmin.run(fullcommand);
      output.append(out);
      logger.info(Strings.get("remote.command.summary", humanreadable, out));
      return determineStatus(args);
    } catch (WindowsException ex) {
      throw new SSHCommandExecutionException(
          Strings.get("remote.command.error", ex.getMessage(), humanreadable), ex);
    } finally {
      teardownAuthTokenFile();
    }
  }
Beispiel #30
0
 // look up and apply coarts for w to each sign in result
 @SuppressWarnings("unchecked")
 private void applyCoarts(Word w, SignHash result) throws LexException {
   List<Sign> inputSigns = new ArrayList<Sign>(result.asSignSet());
   result.clear();
   List<Sign> outputSigns = new ArrayList<Sign>(inputSigns.size());
   // for each surface attr, lookup coarts and apply to input signs, storing results in output
   // signs
   for (Iterator<Pair<String, String>> it = w.getSurfaceAttrValPairs(); it.hasNext(); ) {
     Pair<String, String> p = it.next();
     String attr = (String) p.a;
     if (!_indexedCoartAttrs.contains(attr)) continue;
     String val = (String) p.b;
     Word coartWord = Word.createWord(attr, val);
     SignHash coartResult = getSignsFromWord(coartWord, null, null, null);
     for (Iterator<Sign> it2 = coartResult.iterator(); it2.hasNext(); ) {
       Sign coartSign = it2.next();
       // apply to each input
       for (int j = 0; j < inputSigns.size(); j++) {
         Sign sign = inputSigns.get(j);
         grammar.rules.applyCoart(sign, coartSign, outputSigns);
       }
     }
     // switch output to input for next iteration
     inputSigns.clear();
     inputSigns.addAll(outputSigns);
     outputSigns.clear();
   }
   // add results back
   result.addAll(inputSigns);
 }