Beispiel #1
0
  public void run(String arg) {
    ImagePlus imp = WindowManager.getCurrentImage();
    if (imp == null) {
      IJ.noImage();
      return;
    }

    ImageStack stack1 = imp.getStack();
    String fileName = imp.getTitle();
    int endslice = stack1.getSize();

    ImagePlus imp2 = duplicateStack(imp);
    imp2.show();
    String duplicateName = imp2.getTitle();
    // IJ.showMessage("Box",fileName);
    ImageStack stack2 = imp2.getStack();
    stack1.deleteSlice(1);
    stack2.deleteSlice(endslice);

    String calculatorstring =
        ("image1='"
            + fileName
            + "' operation=Subtract image2="
            + imp2.getTitle()
            + " create stack");

    IJ.run("Image Calculator...", calculatorstring);
    ImagePlus imp3 = WindowManager.getCurrentImage();
    imp3.setTitle(fileName + " DeltaF up");
    imp2.getWindow().close();
    imp.getWindow().close();
  }
Beispiel #2
0
 // at the very end - show output image (if the is a separate one)
 private void showOutput() {
   if (interrupted) return;
   if (outStack != null) {
     outImp = new ImagePlus(TITLE_PREFIX[processType] + imp.getShortTitle(), outStack);
     int[] d = imp.getDimensions();
     outImp.setDimensions(d[2], d[3], d[4]);
     for (int i = 1; i <= imp.getStackSize(); i++)
       outStack.setSliceLabel(imp.getStack().getSliceLabel(i), i);
   }
   if (outImageType != BYTE_OVERWRITE) {
     ImageProcessor ip = outImp.getProcessor();
     if (!Prefs.blackBackground) ip.invertLut();
     ip.resetMinAndMax();
     outImp.show();
   }
 }