@Override
public Response saveGraph(
final String graphSeed, final String username, final String timeStamp, final String graph) {
if (requireAuthentication && (authenticatorHelper.getUsername() == null)) {
// The user needs to be authenticated.
logger.error("User must be logged in to save a graph.");
return Response.status(200).entity("Unable to save, you must be logged in. ").build();
} else {
String authenticatedUsername = username;
try {
if (ValidationUtils.isValid(authenticatorHelper.getUsername())) {
authenticatedUsername = authenticatorHelper.getUsername();
// final G_User byUsername =
// userDataAccess.getByUsername(authenticatedUsername);
// byUsername.getId();
} else {
logger.debug("User was not authenticated");
}
} catch (final Exception e) {
logger.error("Error getting user information during rest call: ", e);
// e.printStackTrace();
}
final G_PersistedGraph pg = new G_PersistedGraph();
pg.setCreated(DateTime.now().getMillis());
pg.setModified(DateTime.now().getMillis());
pg.setGraphSeed(graphSeed);
pg.setUserName(authenticatedUsername);
pg.setGraphJSONdata(graph);
logger.debug("seed: " + graphSeed);
logger.debug("json: " + graph);
final G_PersistedGraph saveGraph = wdao.saveGraph(pg);
if (saveGraph != null) {
return Response.status(200)
.entity("Saved " + graphSeed + " as " + saveGraph.getId())
.build();
} else {
return Response.status(200).entity("Unable to save " + graphSeed).build();
}
}
}
public static ArrayList<File> getFilesRecursively(final String path, final String ext)
throws IOException {
final File folder = new File(path);
final File[] listOfFiles = folder.listFiles();
final ArrayList<File> theFiles = new ArrayList<File>();
for (final File currentFile : listOfFiles) {
final String name = currentFile.getName();
if (currentFile.isDirectory()) {
// logger.debug("Directory name is " +
// currentFile.getAbsolutePath());
theFiles.addAll(getFilesRecursively(currentFile.getAbsolutePath(), ext));
} else {
// logger.debug("File name is " + currentFile.getName());
if (ValidationUtils.isValid(ext)) {
// it's a file and we care about the extension
if (name.contains(".")) {
if (name.startsWith(".")) {
// ignore these temp files
logger.debug("Ignoring file " + name);
} else {
final String currentExt = getFileExtension(name);
logger.debug("current Ext is " + currentExt);
if (("." + ext).equalsIgnoreCase(currentExt)) {
logger.debug("Adding file " + name);
theFiles.add(currentFile);
}
}
} else {
// what do do with files that have no period?
logger.debug("Ignoring file " + name);
}
} else {
// Just add the file
logger.debug("Adding file " + name);
theFiles.add(currentFile);
}
}
}
return theFiles;
}
@Override
public V_CSGraph getProperties(
final String type,
final String[] value,
final String maxDegree,
final String maxNodes,
final String maxEdgesPerNode,
final boolean bipartite,
final boolean leafNodes,
final boolean showNameNodes,
final boolean showIcons,
final boolean useSaved) {
logger.debug("-------");
logger.debug("get property graph for type " + type);
logger.debug("Value " + StringUtils.toString(value));
logger.debug("Degrees " + maxDegree);
logger.debug("LeafNodes " + leafNodes);
logger.debug("Max Nodes " + maxNodes);
logger.debug("Max Edges " + maxEdgesPerNode);
logger.debug("LeafNodes " + leafNodes);
logger.debug("Bipartite " + bipartite);
logger.debug("showNameNodes " + showNameNodes);
logger.debug("useSaved " + useSaved);
final int maxDegreeInt = FastNumberUtils.parseIntWithCheck(maxDegree, 6);
final int maxNodesInt = FastNumberUtils.parseIntWithCheck(maxNodes, 1000);
final int maxEdgesPerNodeInt = FastNumberUtils.parseIntWithCheck(maxEdgesPerNode, 100);
V_CSGraph m = null;
if (requireAuthentication && (authenticatorHelper.getUsername() == null)) {
// The user needs to be authenticated.
m = new V_CSGraph();
m.setIntStatus(1);
final String errorMessage = "You must be authenticated in order to get the graph.";
m.setStrStatus(errorMessage);
m.setUserId("Unknown");
m.setUserName("Unknown");
} else {
// Either we don't need authentication or the user is
// authenticated.
String userId = null;
String username = authenticatorHelper.getUsername();
if (requireAuthentication) {
if (ValidationUtils.isValid(username)) {
try {
final G_User byUsername = userDataAccess.getByUsername(username);
userId = byUsername.getId();
} catch (final Exception e) {
logger.error("Error getting user information during rest call: ", e);
// e.printStackTrace();
}
} else {
logger.debug("User was not authenticated");
}
}
if (ValidationUtils.isValid(value) && !"null".equals(value[0])) {
final String firstValue = value[0];
final G_GraphViewEvent gve = new G_GraphViewEvent();
gve.setReportId(firstValue);
gve.setUserId(userId);
gve.setUserName(username);
gve.setTimeInitiated(DateTime.now().getMillis());
if (useSaved) {
try {
// TODO: fix which key is going to be used as the seed
final G_PersistedGraph existingGraph =
wdao.getExistingGraph(firstValue, userId, username);
final ObjectMapper mapper = new ObjectMapper();
if (existingGraph != null) {
m = mapper.readValue(existingGraph.getGraphJSONdata(), V_CSGraph.class);
if (m == null) {
logger.error(
"Could not parse existing graph from a previous save, will regenerate.");
} else {
gve.setReportType("Existing");
loggingDao.recordGraphViewEvent(gve);
m.setStrStatus(
"This graph was previously saved on "
+ DataFormatConstants.formatDate(existingGraph.getModified()));
m.createPositionMapping(); // necessary for
// preset layout in
// Cytoscape 3.2.9
}
} else {
logger.info("Could not find previously saved graph, will regenerate");
}
} catch (final Exception e) {
logger.error("Error building graph at rest service: ", e);
}
}
// If pulling from cache didn't work, get a new graph
if (m == null) {
V_GenericGraph g = null;
try {
final V_GraphQuery q = new V_GraphQuery();
for (final String v : value) {
q.addSearchIds(StringUtils.split(v, ','));
}
q.setDirected(false);
q.setMaxNodes(maxNodesInt);
q.setMaxEdgesPerNode(maxEdgesPerNodeInt);
q.setMaxHops(maxDegreeInt);
q.setUserId(userId);
q.setUsername(username);
gve.setQueryObject(q);
gve.setReportType("New");
loggingDao.recordGraphViewEvent(gve);
g = propertyGraphBuilder.buildFromSubGraphs(q);
// g = propertyGraphBuilder.makeGraphResponse(q);
g.setUserId(userId);
g.setUsername(username);
m = new V_CSGraph(g, true);
} catch (final Exception e) {
logger.error("Error building graph at rest service: ", e);
}
}
} else {
m = new V_CSGraph();
String errorMessage;
m.setUserId(userId);
m.setUserName(username);
if (useSaved) {
errorMessage =
"Tried to recover an existing graph, but no valid id was provided to the server: ["
+ StringUtils.toString(value)
+ "]";
} else {
errorMessage =
"Tried to generate a new graph, but no valid id was provided to the server: ["
+ StringUtils.toString(value)
+ "]";
}
logger.error(errorMessage);
m.setIntStatus(1);
m.setStrStatus(errorMessage);
}
}
return m;
}