/**
* This Class is used to Add/Edit data in the database.
*
* @author gautam_shetty
*/
public class CommonAddEditAction extends SecureAction {
/** LOGGER Logger - Generic LOGGER. */
private static final Logger LOGGER = Logger.getCommonLogger(CommonAddEditAction.class);
/**
* Overrides the execute method of Action class. Adds / Updates the data in the database.
*
* @param mapping ActionMapping
* @param form ActionForm
* @param request HttpServletRequest
* @param response HttpServletResponse
* @return ActionForward
* @throws Exception Exception
*/
public ActionForward executeSecureAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
LOGGER.info("in execute method");
BaseAddEditAction addEditAction;
AbstractActionForm abstractForm = (AbstractActionForm) form;
ActionForward actionfwd;
try {
if (!isTokenValid(request)) {
actionfwd = mapping.findForward(Constants.FAILURE);
ActionErrors actionErrors = new ActionErrors();
ActionError actionError =
new ActionError("errors.item", "Invalid request for add/edit operation");
actionErrors.add(ActionErrors.GLOBAL_ERROR, actionError);
saveErrors(request, actionErrors);
} else {
resetToken(request);
if (abstractForm.isAddOperation()) {
addEditAction = new CommonAddAction();
} else {
addEditAction = new CommonEdtAction();
}
actionfwd = addEditAction.executeXSS(mapping, abstractForm, request, response);
}
} catch (ApplicationException applicationException) {
LOGGER.error("Common Add/Edit failed.." + applicationException.getCustomizedMsg());
ActionErrors actionErrors = new ActionErrors();
ActionError actionError =
new ActionError("errors.item", applicationException.getCustomizedMsg());
actionErrors.add(ActionErrors.GLOBAL_ERROR, actionError);
saveErrors(request, actionErrors);
actionfwd = mapping.findForward(Constants.FAILURE);
}
return actionfwd;
}
}
/**
* Overrides the execute method of Action class. Adds / Updates the data in the database.
*
* @param mapping ActionMapping
* @param form ActionForm
* @param request HttpServletRequest
* @param response HttpServletResponse
* @return ActionForward
* @throws Exception Exception
*/
public ActionForward executeSecureAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
LOGGER.info("in execute method");
BaseAddEditAction addEditAction;
AbstractActionForm abstractForm = (AbstractActionForm) form;
ActionForward actionfwd;
try {
if (!isTokenValid(request)) {
actionfwd = mapping.findForward(Constants.FAILURE);
ActionErrors actionErrors = new ActionErrors();
ActionError actionError =
new ActionError("errors.item", "Invalid request for add/edit operation");
actionErrors.add(ActionErrors.GLOBAL_ERROR, actionError);
saveErrors(request, actionErrors);
} else {
resetToken(request);
if (abstractForm.isAddOperation()) {
addEditAction = new CommonAddAction();
} else {
addEditAction = new CommonEdtAction();
}
actionfwd = addEditAction.executeXSS(mapping, abstractForm, request, response);
}
} catch (ApplicationException applicationException) {
LOGGER.error("Common Add/Edit failed.." + applicationException.getCustomizedMsg());
ActionErrors actionErrors = new ActionErrors();
ActionError actionError =
new ActionError("errors.item", applicationException.getCustomizedMsg());
actionErrors.add(ActionErrors.GLOBAL_ERROR, actionError);
saveErrors(request, actionErrors);
actionfwd = mapping.findForward(Constants.FAILURE);
}
return actionfwd;
}
/**
* Populates all the fields from the domain object to the form bean.
*
* @param abstractDomain An AbstractDomain Object
*/
@Override
public void setAllValues(AbstractDomainObject abstractDomain) {
super.setAllValues(abstractDomain);
final TissueSpecimenReviewEventParameters tissueSpecimenReviewParametersObject =
(TissueSpecimenReviewEventParameters) abstractDomain;
this.neoplasticCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getNeoplasticCellularityPercentage());
this.necrosisPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getNecrosisPercentage());
this.lymphocyticPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getLymphocyticPercentage());
this.totalCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getTotalCellularityPercentage());
this.histologicalQuality =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getHistologicalQuality());
logger.debug("this.neoplasticCellularityPercentage : " + this.neoplasticCellularityPercentage);
logger.debug("this.necrosisPercentage : " + this.necrosisPercentage);
logger.debug("this.lymphocyticPercentage : " + this.lymphocyticPercentage);
logger.debug("this.totalCellularityPercentage : " + this.totalCellularityPercentage);
}
/** @author hrishikesh_rajpathak */
public class PopularCategoryCache {
private static PopularCategoryCache popularCategoryCache = null;
private static Collection<CategoryPopularity> popularCategories;
private static final Logger logger =
edu.wustl.common.util.logger.Logger.getLogger(CommonUtils.class);
/**
* Method to get singleton instance of PopularCategoryCache
*
* @return singleton object of PopularCategoryCache
*/
public static synchronized PopularCategoryCache getInstance() {
if (popularCategoryCache == null) {
popularCategoryCache = new PopularCategoryCache();
}
return popularCategoryCache;
}
/** Private constructor for singleton class */
private PopularCategoryCache() {
cachePopularCategories();
}
/**
* Gets all the popular categories from database and sets it as the value of
* "popularCategoriesCollection"
*/
private void cachePopularCategories() {
CategoryBusinessInterface categoryOperations =
(CategoryBusinessInterface)
CommonUtils.getBusinessInterface(
EjbNamesConstants.CATEGORY_BEAN, CategoryHomeInterface.class);
try {
popularCategories = categoryOperations.getPopularCategories();
} catch (RemoteException e) {
logger.error(e.getStackTrace());
CommonUtils.handleException(e, NewWelcomePanel.getMainFrame(), true, true, true, true);
}
}
/** @return Returns the popularCategoriesCollection. */
public Collection<CategoryPopularity> getPopularCategories() {
return popularCategories;
}
}
/**
* This class has functions to read PrintServiceImplementor Properties file.
*
* @author falguni sachde
*/
public final class PropertyHandler {
/** Generic logger. */
private static final Logger logger = Logger.getCommonLogger(PropertyHandler.class);
/** printimplClass Properties. */
private static Properties printimplClassProperties = null;
/** private constructor. */
private PropertyHandler() {}
/**
* @param path path.
* @throws Exception Exception
*/
public static void init(String path) throws Exception {
try {
final String absolutePath =
CommonServiceLocator.getInstance().getPropDirPath() + File.separator + path;
final InputStream inpurStream = new FileInputStream(new File(absolutePath));
printimplClassProperties = new Properties();
printimplClassProperties.load(inpurStream);
/*printimplClassProperties = new Properties();
printimplClassProperties.
load(PropertyHandler.class.getClassLoader().getResourceAsStream(path));*/
} catch (final Exception e) {
PropertyHandler.logger.error(e.getMessage(), e);
}
}
/**
* Description:This method takes the property name as String argument and returns the properties
* value as String.
*
* @param propertyName name of property Key
* @return String property value
* @throws Exception Exception
*/
public static String getValue(String propertyName) throws Exception {
if (printimplClassProperties == null) {
init("PrintServiceImplementor.properties");
}
return (String) printimplClassProperties.get(propertyName);
}
}
/**
* Common class which is a thread to stop caties servers depending on there port.
*
* @author vijay_pande
*/
public class StopServer extends Thread {
/** logger. */
private final transient Logger logger = Logger.getCommonLogger(StopServer.class);
/** port. */
private final String port;
/**
* Constructor for the class.
*
* @param port key to fetch port number from catissueCore-properties.xml file
*/
public StopServer(String port) {
super();
this.port = port;
}
/**
* Default method for the thread, which listen to socket and stop current thread when recieve any
* responce.
*/
@Override
public void run() {
try {
// get port number for server from catissueCore-properties.xml file
final int port = Integer.parseInt(CaTIESProperties.getValue(this.port));
final ServerSocket serv = new ServerSocket(port);
BufferedReader bufferedReader;
final Socket sock = serv.accept();
bufferedReader = new BufferedReader(new InputStreamReader(sock.getInputStream()));
new PrintWriter(new OutputStreamWriter(sock.getOutputStream()), true);
bufferedReader.readLine();
this.logger.info("Stopping server");
bufferedReader.close();
sock.close();
// close server socket
serv.close();
// stop server
System.exit(0);
} catch (final Exception e) {
this.logger.error("Error stopping server " + e.getMessage(), e);
e.printStackTrace();
}
}
}
/** @author mandar_deshmukh This Class handles the Tissue Specimen Review event parameters. */
public class TissueSpecimenReviewEventParametersForm extends SpecimenEventParametersForm {
private static final long serialVersionUID = 1L;
/** logger Logger - Generic logger. */
private static Logger logger =
Logger.getCommonLogger(TissueSpecimenReviewEventParametersForm.class);
/** Percentage of histologically evident neoplastic cells present in the tissue specimen. */
protected String neoplasticCellularityPercentage;
/** Percentage of specimen that is histologically necrotic. */
protected String necrosisPercentage;
/** Percentage of histologically evident lymphocytes in the tissue specimen. */
protected String lymphocyticPercentage;
/**
* Percentage of total cellularity of the specimen. Note that TOTCELL-NEOCELL-LYMPHCELL= %
* cellularity of other stromal, etc. cell types. Also Note that 100-TOTCELL-NECROSIS= % of tissue
* containing a cellular material.
*/
protected String totalCellularityPercentage;
/**
* Name : Virender Mehta Reviewer: Sachin Lale Bug ID: defaultValueConfiguration_BugID Patch
* ID:defaultValueConfiguration_BugID_16 Description: Configuration for default value for
* Histological Quality
*/
/** Histological Quality of the specimen. */
protected String histologicalQuality =
(String) DefaultValueManager.getDefaultValue(Constants.DEFAULT_HISTOLOGICAL_QUALITY);
/**
* Returns the percentage of histologically evident neoplastic cells present in the tissue
* specimen.
*
* @return The percentage of histologically evident neoplastic cells present in the tissue
* specimen.
* @see #setNeoplasticCellularityPercentage(double)
*/
public String getNeoplasticCellularityPercentage() {
return this.neoplasticCellularityPercentage;
}
/**
* Sets the percentage of histologically evident neoplastic cells present in the specimen.
*
* @param neoplasticCellularityPercentage the percentage of histologically evident neoplastic
* cells present in the specimen.
* @see #getNeoplasticCellularityPercentage()
*/
public void setNeoplasticCellularityPercentage(String neoplasticCellularityPercentage) {
this.neoplasticCellularityPercentage = neoplasticCellularityPercentage;
}
/**
* Returns the percentage of specimen that is histologically necrotic.
*
* @return The percentage of specimen that is histologically necrotic.
* @see #setNecrosisPercentage(double)
*/
public String getNecrosisPercentage() {
return this.necrosisPercentage;
}
/**
* Sets the percentage of specimen that is histologically necrotic.
*
* @param necrosisPercentage the percentage of specimen that is histologically necrotic.
* @see #getNecrosisPercentage()
*/
public void setNecrosisPercentage(String necrosisPercentage) {
this.necrosisPercentage = necrosisPercentage;
}
/**
* Returns the percentage of histologically evident lymphocytes in the tissue specimen.
*
* @return The percentage of histologically evident lymphocytes in the tissue specimen.
* @see #setLymphocyticPercentage(double)
*/
public String getLymphocyticPercentage() {
return this.lymphocyticPercentage;
}
/**
* Sets the percentage of histologically evident lymphocytes in the tissue specimen.
*
* @param lymphocyticPercentage the percentage of histologically evident lymphocytes in the tissue
* specimen.
* @see #getLymphocyticPercentage()
*/
public void setLymphocyticPercentage(String lymphocyticPercentage) {
this.lymphocyticPercentage = lymphocyticPercentage;
}
/**
* Returns the total cellularity percentage.
*
* @return The total cellularity percentage.
* @see #setTotalCellularityPercentage(double)
*/
public String getTotalCellularityPercentage() {
return this.totalCellularityPercentage;
}
/**
* Sets the total cellularity percentage.
*
* @param totalCellularityPercentage the total cellularity percentage.
* @see #getTotalCellularityPercentage()
*/
public void setTotalCellularityPercentage(String totalCellularityPercentage) {
this.totalCellularityPercentage = totalCellularityPercentage;
}
/**
* Returns Histological Quality of the specimen.
*
* @return Histological Quality of the specimen.
* @see #setHistologicalQuality(String)
*/
public String getHistologicalQuality() {
return this.histologicalQuality;
}
/**
* Sets Histological Quality of the specimen.
*
* @param histologicalQuality Histological Quality of the specimen.
* @see #getHistologicalQuality()
*/
public void setHistologicalQuality(String histologicalQuality) {
this.histologicalQuality = histologicalQuality;
}
// ----- SUPERCLASS METHODS
/** @return TISSUE_SPECIMEN_REVIEW_EVENT_PARAMETERS_FORM_ID */
@Override
public int getFormId() {
return Constants.TISSUE_SPECIMEN_REVIEW_EVENT_PARAMETERS_FORM_ID;
}
/**
* Populates all the fields from the domain object to the form bean.
*
* @param abstractDomain An AbstractDomain Object
*/
@Override
public void setAllValues(AbstractDomainObject abstractDomain) {
super.setAllValues(abstractDomain);
final TissueSpecimenReviewEventParameters tissueSpecimenReviewParametersObject =
(TissueSpecimenReviewEventParameters) abstractDomain;
this.neoplasticCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getNeoplasticCellularityPercentage());
this.necrosisPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getNecrosisPercentage());
this.lymphocyticPercentage =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getLymphocyticPercentage());
this.totalCellularityPercentage =
CommonUtilities.toString(
tissueSpecimenReviewParametersObject.getTotalCellularityPercentage());
this.histologicalQuality =
CommonUtilities.toString(tissueSpecimenReviewParametersObject.getHistologicalQuality());
logger.debug("this.neoplasticCellularityPercentage : " + this.neoplasticCellularityPercentage);
logger.debug("this.necrosisPercentage : " + this.necrosisPercentage);
logger.debug("this.lymphocyticPercentage : " + this.lymphocyticPercentage);
logger.debug("this.totalCellularityPercentage : " + this.totalCellularityPercentage);
}
/**
* Overrides the validate method of ActionForm.
*
* @return error ActionErrors instance
* @param mapping Actionmapping instance
* @param request HttpServletRequest instance
*/
@Override
public ActionErrors validate(ActionMapping mapping, HttpServletRequest request) {
final ActionErrors errors = super.validate(mapping, request);
final Validator validator = new Validator();
try {
// // checks the neoplasticCellularityPercentage
if (!Validator.isEmpty(this.neoplasticCellularityPercentage)
&& !validator.isDouble(this.neoplasticCellularityPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"tissuespecimenrevieweventparameters.neoplasticcellularitypercentage")));
}
//
// // checks the necrosisPercentage
if (!Validator.isEmpty(this.necrosisPercentage)
&& !validator.isDouble(this.necrosisPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"tissuespecimenrevieweventparameters.necrosispercentage")));
}
//
// // checks the lymphocyticPercentage
if (!Validator.isEmpty(this.lymphocyticPercentage)
&& !validator.isDouble(this.lymphocyticPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"tissuespecimenrevieweventparameters.lymphocyticpercentage")));
}
//
// // checks the totalCellularityPercentage
if (!Validator.isEmpty(this.totalCellularityPercentage)
&& !validator.isDouble(this.totalCellularityPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"tissuespecimenrevieweventparameters.totalcellularitypercentage")));
}
//
// // checks the histologicalQuality
// if (!validator.isValidOption(histologicalQuality) )
// {
// errors.add(ActionErrors.GLOBAL_ERROR, new
// ActionError("errors.item.required",ApplicationProperties.getValue("tissuespecimenrevieweventparameters.histologicalquality")));
// }
//
} catch (final Exception excp) {
TissueSpecimenReviewEventParametersForm.logger.error(excp.getMessage(), excp);
excp.printStackTrace();
}
return errors;
}
/** Resets the values of all the fields. */
@Override
protected void reset() {
// super.reset();
// this.necrosisPercentage = null;
// this.neoplasticCellularityPercentage = null;
// this.lymphocyticPercentage = null;
// this.totalCellularityPercentage = null;
// this.histologicalQuality = null;
}
@Override
public void setAddNewObjectIdentifier(String arg0, Long arg1) {
// TODO Auto-generated method stub
}
}
/**
* This bean handles user based operations
*
* @author hrishikesh_rajpathak
*/
public class UserBean extends AbstractStatelessSessionBean implements UserBusinessInterface {
private static final long serialVersionUID = -9088505042791608055L;
Logger logger = edu.wustl.common.util.logger.Logger.getLogger(UserBean.class);
/**
* Insert given user as a new user in database
*
* @param dref
* @param idP
* @return User that has been inserted
* @throws RemoteException
*/
public UserInterface insertUser(String serializedDCR) throws RemoteException {
String usersGridId = AuthenticationUtility.getUsersGridId(serializedDCR);
User user = new User(usersGridId, null, false);
return new UserOperations().insertUser(user);
}
/**
* Update present user in database
*
* @param user
* @throws RemoteException
*/
public void updateUser(UserInterface user) throws RemoteException {
new UserOperations().updateUser(user);
}
/**
* Get a map of entity group name vs related list of service urls for the given user
*
* @param user
* @return Service Urls for a user
* @throws DynamicExtensionsSystemException
* @throws DynamicExtensionsApplicationException
* @throws RemoteException
*/
public Map<String, List<String>> getServiceUrlsForUser(UserInterface user)
throws DynamicExtensionsSystemException, DynamicExtensionsApplicationException,
RemoteException {
return new UserOperations().getServiceURLsForUser(user);
}
/* (non-Javadoc)
* @see edu.wustl.cab2b.common.ejb.user.UserBusinessInterface#getUserByName(java.lang.String)
* If user not found, it returns null
*/
/**
* Get user by user name. If user of that name not found in database, it returns null.
*
* @param dref
* @param idP
* @return
* @throws RemoteException
*/
public UserInterface getUserByName(String serializedDCR) throws RemoteException {
String usersGridId = AuthenticationUtility.getUsersGridId(serializedDCR);
return new UserOperations().getUserByName(usersGridId);
}
/**
* Returns globus credential
*
* @param dref
* @param idP
* @return
* @throws RemoteException
*/
public GlobusCredential getGlobusCredential(String serializedDCR) throws RemoteException {
return AuthenticationUtility.getGlobusCredential(serializedDCR);
}
/** @return Anonymous User */
public UserInterface getAnonymousUser() throws RemoteException {
return new UserOperations().getUserByName("Anonymous");
}
}
/** @author sagar_baldwa */
public class ComboDataBizLogic extends CatissueDefaultBizLogic {
private final transient Logger logger = Logger.getCommonLogger(ComboDataBizLogic.class);
/**
* This method would return the Clinical Diagnosis List
*
* @return List which contains the Clinical Diagnosis Data
* @throws BizLogicException
* @throws BizLogicException
*/
public List getClinicalDiagnosisList(String query, boolean showSubset) throws BizLogicException {
// populating clinical Diagnosis field
final List<NameValueBean> clinicalDiagnosisList = new ArrayList();
final String sourceObjectName = PermissibleValueImpl.class.getName();
final String[] selectColumnName = {"value"};
DAO dao = null;
try {
new DefaultBizLogic();
dao = this.openDAOSession(null);
String hql =
"Select PermissibleValueImpl.value from edu.wustl.common.cde.PermissibleValueImpl "
+ "PermissibleValueImpl WHERE LOWER(PermissibleValueImpl.value) like LOWER('%"
+ query
+ "%') AND PermissibleValueImpl.cde.publicId = 'Clinical_Diagnosis_PID' "
+ "order by PermissibleValueImpl.value desc";
List dataList = dao.executeQuery(hql);
clinicalDiagnosisList.add(
new NameValueBean(Constants.SELECT_OPTION, "" + Constants.SELECT_OPTION_VALUE));
if (showSubset) {
clinicalDiagnosisList.add(
new NameValueBean(Constants.SHOW_SUBSET + "start", Constants.SHOW_SUBSET));
}
int cnt = 1;
final Iterator<String> iterator = dataList.iterator();
while (iterator.hasNext()) {
final String clinicaDiagnosisvalue = iterator.next();
if (clinicaDiagnosisvalue.toString().toLowerCase().startsWith(query.toLowerCase())) {
clinicalDiagnosisList.add(
1, new NameValueBean(clinicaDiagnosisvalue, clinicaDiagnosisvalue));
cnt++;
} else {
clinicalDiagnosisList.add(
cnt, new NameValueBean(clinicaDiagnosisvalue, clinicaDiagnosisvalue));
}
}
if (showSubset) {
clinicalDiagnosisList.add(
new NameValueBean(Constants.SHOW_SUBSET + "end", Constants.SHOW_SUBSET));
}
this.closeDAOSession(dao);
} catch (final DAOException exp) {
this.logger.error(exp.getMessage(), exp);
exp.printStackTrace();
throw this.getBizLogicException(exp, exp.getErrorKeyName(), exp.getMsgValues());
} finally {
this.closeDAOSession(dao);
}
return clinicalDiagnosisList;
}
/**
* This method fetches the required number of records from Clinical Diagnosis List and poplulates
* in the Combo Box on UI.
*
* @param limitFetch is the limit to fetch and display the Clinical Diagnosis records in Combo Box
* on UI
* @param startFetch is the position from where you fetch the Clinical Diagnosis data from the
* List
* @param query holds the string which the user has typed down in combo box for autocomplete
* feature
* @return JSONObject which holds the list to eb poplulated on UI front
*/
public JSONObject getClinicalDiagnosisData(
Integer limitFetch,
Integer startFetch,
String query,
Collection<NameValueBean> clinicalDiagnosisBean,
String showOption) {
JSONObject jsonObject = null;
JSONArray jsonArray = null;
try {
jsonArray = new JSONArray();
jsonObject = new JSONObject();
final List<NameValueBean> clinicalDiagnosisList;
boolean showSubset = false;
if (!clinicalDiagnosisBean.isEmpty() && Constants.SHOW_ALL_VALUES.equals(showOption)) {
showSubset = true;
}
if (clinicalDiagnosisBean == null
|| clinicalDiagnosisBean.isEmpty()
|| Constants.SHOW_ALL_VALUES.equals(showOption)) {
clinicalDiagnosisList = this.getClinicalDiagnosisList(query, showSubset);
} else {
clinicalDiagnosisList = (List<NameValueBean>) clinicalDiagnosisBean;
}
jsonObject.put("totalCount", new Integer(clinicalDiagnosisList.size()));
final ListIterator<NameValueBean> iterator =
clinicalDiagnosisList.listIterator(startFetch + 1);
final Integer total = limitFetch + startFetch;
// 1st record in List has value -1, so startFetch is incremented and
// made to fetch data from 2nd element from the List
startFetch++;
boolean flag = false;
while (startFetch < total + 1) {
if (iterator.hasNext()) {
final NameValueBean nameValueBean = iterator.next();
if (nameValueBean.getName().toLowerCase().contains(query.toLowerCase())
|| query == null) {
final JSONObject innerJsonObject = new JSONObject();
// nameValueBean = (NameValueBean) iterator.next();
innerJsonObject.put("id", nameValueBean.getName());
innerJsonObject.put("field", nameValueBean.getValue());
jsonArray.put(innerJsonObject);
flag = true;
} else if (flag) {
break;
}
}
startFetch++;
}
jsonObject.put("row", jsonArray);
} catch (final Exception e) {
this.logger.error(e.getMessage(), e);
e.printStackTrace();
// System.out.println(e);
}
return jsonObject;
}
}
/** The Class CreateSpecimenTemplateForm. */
public class CreateSpecimenTemplateForm extends AbstractActionForm {
/** serial version id. */
private static final long serialVersionUID = 1L;
/** logger Logger - Generic logger. */
private static Logger logger = Logger.getCommonLogger(CreateSpecimenTemplateForm.class);
/** Display Name. */
protected String displayName;
/** Type of specimen. e.g. Tissue, Molecular, Cell, Fluid */
protected String className;
/** Sub Type of specimen. e.g. Serum, Plasma, Blood, Fresh Tissue etc. */
protected String type;
/** Anatomic site from which the specimen was derived. */
private String tissueSite;
/** For bilateral sites, left or right. */
private String tissueSide;
/**
* Histopathological character of the specimen e.g. Non-Malignant, Malignant, Non-Malignant
* Diseased, Pre-Malignant.
*/
private String pathologicalStatus;
/** The storage location for specimen. */
private String storageLocationForSpecimen;
/** The storage location for aliquot specimen. */
private String storageLocationForAliquotSpecimen;
/** Concentration of specimen. */
protected String concentration = "0";
/** Amount of Specimen. */
protected String quantity;
/**
* A historical information about the specimen i.e. whether the specimen is a new specimen or a
* derived specimen or an aliquot.
*/
private String lineage;
/** Unit of specimen. */
protected String unit;
/** A number that tells how many aliquots to be created. */
private String noOfAliquots;
/** Initial quantity per aliquot. */
private String quantityPerAliquot;
/** Collection of aliquot specimens derived from this specimen. */
protected Collection aliquotSpecimenCollection;
/** Collection of derive specimens derived from this specimen. */
protected Collection deriveSpecimenCollection;
/** The collection event id. */
private long collectionEventId; // Mandar : CollectionEvent 10-July-06
/** The collection event specimen id. */
private long collectionEventSpecimenId;
/** The collection event user id. */
private long collectionEventUserId;
/** The collection user name. */
private String collectionUserName = null;
/**
* Gets the collection user name.
*
* @return collectionUserName
*/
public String getCollectionUserName() {
return this.collectionUserName;
}
/**
* Sets the collection user name.
*
* @param collectionUserName collectionUserName
*/
public void setCollectionUserName(String collectionUserName) {
this.collectionUserName = collectionUserName;
}
/** The received event id. */
private long receivedEventId;
/** The received event specimen id. */
private long receivedEventSpecimenId;
/** The received event user id. */
private long receivedEventUserId;
/** The received user name. */
private String receivedUserName = null;
/**
* Gets the received user name.
*
* @return receivedUserName
*/
public String getReceivedUserName() {
return this.receivedUserName;
}
/**
* Sets the received user name.
*
* @param receivedUserName receivedUserName
*/
public void setReceivedUserName(String receivedUserName) {
this.receivedUserName = receivedUserName;
}
/** The collection event collection procedure. */
private String collectionEventCollectionProcedure;
/** The collection event container. */
private String collectionEventContainer;
/** The received event received quality. */
private String receivedEventReceivedQuality;
/** The no of derive specimen. */
private int noOfDeriveSpecimen;
/** The derive specimen values. */
private Map deriveSpecimenValues = new LinkedHashMap();
/** The node key. */
private String nodeKey = null;
/**
* Gets the class name.
*
* @return the class name
*/
public String getClassName() {
return this.className;
}
/**
* Sets the class name.
*
* @param className the new class name
*/
public void setClassName(String className) {
this.className = className;
}
/**
* Gets the type.
*
* @return the type
*/
public String getType() {
return this.type;
}
/**
* Sets the type.
*
* @param type the new type
*/
public void setType(String type) {
this.type = type;
}
/**
* Gets the tissue site.
*
* @return the tissue site
*/
public String getTissueSite() {
return this.tissueSite;
}
/**
* Sets the tissue site.
*
* @param tissueSite the new tissue site
*/
public void setTissueSite(String tissueSite) {
this.tissueSite = tissueSite;
}
/**
* Gets the concentration.
*
* @return the concentration
*/
public String getConcentration() {
return this.concentration;
}
/**
* Sets the concentration.
*
* @param concentration the new concentration
*/
public void setConcentration(String concentration) {
this.concentration = concentration;
}
/**
* Gets the quantity.
*
* @return the quantity
*/
public String getQuantity() {
return this.quantity;
}
/**
* Sets the quantity.
*
* @param quantity the new quantity
*/
public void setQuantity(String quantity) {
this.quantity = quantity;
}
/**
* Gets the no of aliquots.
*
* @return the no of aliquots
*/
public String getNoOfAliquots() {
return this.noOfAliquots;
}
/**
* Sets the no of aliquots.
*
* @param noOfAliquots the new no of aliquots
*/
public void setNoOfAliquots(String noOfAliquots) {
this.noOfAliquots = noOfAliquots;
if (noOfAliquots != null && noOfAliquots.equals("0")) {
this.noOfAliquots = "";
}
}
/**
* Gets the quantity per aliquot.
*
* @return the quantity per aliquot
*/
public String getQuantityPerAliquot() {
return this.quantityPerAliquot;
}
/**
* Sets the quantity per aliquot.
*
* @param quantityPerAliquot the new quantity per aliquot
*/
public void setQuantityPerAliquot(String quantityPerAliquot) {
this.quantityPerAliquot = quantityPerAliquot;
}
/**
* Gets the collection event collection procedure.
*
* @return the collection event collection procedure
*/
public String getCollectionEventCollectionProcedure() {
return this.collectionEventCollectionProcedure;
}
/**
* Sets the collection event collection procedure.
*
* @param collectionEventCollectionProcedure the new collection event collection procedure
*/
public void setCollectionEventCollectionProcedure(String collectionEventCollectionProcedure) {
this.collectionEventCollectionProcedure = collectionEventCollectionProcedure;
}
/**
* Gets the collection event container.
*
* @return the collection event container
*/
public String getCollectionEventContainer() {
return this.collectionEventContainer;
}
/**
* Sets the collection event container.
*
* @param collectionEventContainer the new collection event container
*/
public void setCollectionEventContainer(String collectionEventContainer) {
this.collectionEventContainer = collectionEventContainer;
}
/**
* Gets the received event received quality.
*
* @return the received event received quality
*/
public String getReceivedEventReceivedQuality() {
return this.receivedEventReceivedQuality;
}
/**
* Sets the received event received quality.
*
* @param receivedEventReceivedQuality the new received event received quality
*/
public void setReceivedEventReceivedQuality(String receivedEventReceivedQuality) {
this.receivedEventReceivedQuality = receivedEventReceivedQuality;
}
/**
* Gets the no of derive specimen.
*
* @return the no of derive specimen
*/
public int getNoOfDeriveSpecimen() {
return this.noOfDeriveSpecimen;
}
/**
* Sets the no of derive specimen.
*
* @param noOfDeriveSpecimen the new no of derive specimen
*/
public void setNoOfDeriveSpecimen(int noOfDeriveSpecimen) {
this.noOfDeriveSpecimen = noOfDeriveSpecimen;
}
/**
* Gets the derive specimen value.
*
* @param key the key
* @return the derive specimen value
*/
public Object getDeriveSpecimenValue(String key) {
return this.deriveSpecimenValues.get(key);
}
/**
* Sets the derive specimen value.
*
* @param key the key
* @param value the value
*/
public void setDeriveSpecimenValue(String key, Object value) {
if (this.isMutable()) {
if (this.deriveSpecimenValues == null) {
this.deriveSpecimenValues = new LinkedHashMap();
}
this.deriveSpecimenValues.put(key, value);
}
}
/**
* Gets the derive specimen values.
*
* @return the derive specimen values
*/
public Map getDeriveSpecimenValues() {
return this.deriveSpecimenValues;
}
/**
* Sets the derive specimen values.
*
* @param deriveSpecimenValues the new derive specimen values
*/
public void setDeriveSpecimenValues(Map deriveSpecimenValues) {
this.deriveSpecimenValues = deriveSpecimenValues;
}
/**
* Gets the all derive specimen valuess.
*
* @return Returns the values.
*/
public Collection getAllDeriveSpecimenValuess() {
return this.deriveSpecimenValues.values();
}
/* (non-Javadoc)
* @see edu.wustl.common.actionForm.AbstractActionForm#getFormId()
*/
@Override
public int getFormId() {
// TODO Auto-generated method stub
return 0;
}
/* (non-Javadoc)
* @see edu.wustl.common.actionForm.AbstractActionForm#reset()
*/
@Override
protected void reset() {}
/* (non-Javadoc)
* @see edu.wustl.common.actionForm.IValueObject#setAllValues(edu.wustl.common.domain.AbstractDomainObject)
*/
public void setAllValues(AbstractDomainObject arg0) {
// TODO Auto-generated method stub
}
/**
* Gets the lineage.
*
* @return the lineage
*/
public String getLineage() {
return this.lineage;
}
/**
* Sets the lineage.
*
* @param lineage the new lineage
*/
public void setLineage(String lineage) {
this.lineage = lineage;
}
/**
* Gets the aliquot specimen collection.
*
* @return the aliquot specimen collection
*/
public Collection getAliquotSpecimenCollection() {
return this.aliquotSpecimenCollection;
}
/**
* Sets the aliquot specimen collection.
*
* @param aliquotSpecimenCollection the new aliquot specimen collection
*/
public void setAliquotSpecimenCollection(Collection aliquotSpecimenCollection) {
this.aliquotSpecimenCollection = aliquotSpecimenCollection;
}
/**
* Gets the derive specimen collection.
*
* @return the derive specimen collection
*/
public Collection getDeriveSpecimenCollection() {
return this.deriveSpecimenCollection;
}
/**
* Sets the derive specimen collection.
*
* @param deriveSpecimenCollection the new derive specimen collection
*/
public void setDeriveSpecimenCollection(Collection deriveSpecimenCollection) {
this.deriveSpecimenCollection = deriveSpecimenCollection;
}
/**
* Gets the display name.
*
* @return the display name
*/
public String getDisplayName() {
return this.displayName;
}
/**
* Sets the display name.
*
* @param displayName the new display name
*/
public void setDisplayName(String displayName) {
this.displayName = displayName;
}
/**
* Gets the unit.
*
* @return the unit
*/
public String getUnit() {
return this.unit;
}
/**
* Sets the unit.
*
* @param unit the new unit
*/
public void setUnit(String unit) {
this.unit = unit;
}
/**
* Gets the collection event id.
*
* @return the collection event id
*/
public long getCollectionEventId() {
return this.collectionEventId;
}
/**
* Sets the collection event id.
*
* @param collectionEventId the new collection event id
*/
public void setCollectionEventId(long collectionEventId) {
this.collectionEventId = collectionEventId;
}
/**
* Gets the collection event specimen id.
*
* @return the collection event specimen id
*/
public long getCollectionEventSpecimenId() {
return this.collectionEventSpecimenId;
}
/**
* Gets the collection event user id.
*
* @return the collection event user id
*/
public long getCollectionEventUserId() {
return this.collectionEventUserId;
}
/**
* Sets the collection event specimen id.
*
* @param collectionEventSpecimenId the new collection event specimen id
*/
public void setCollectionEventSpecimenId(long collectionEventSpecimenId) {
this.collectionEventSpecimenId = collectionEventSpecimenId;
}
/**
* Gets the received event id.
*
* @return the received event id
*/
public long getReceivedEventId() {
return this.receivedEventId;
}
/**
* Sets the collection event user id.
*
* @param collectionEventUserId the new collection event user id
*/
public void setCollectionEventUserId(long collectionEventUserId) {
this.collectionEventUserId = collectionEventUserId;
}
/**
* Sets the received event id.
*
* @param receivedEventId the new received event id
*/
public void setReceivedEventId(long receivedEventId) {
this.receivedEventId = receivedEventId;
}
/**
* Sets the received event specimen id.
*
* @param receivedEventSpecimenId the new received event specimen id
*/
public void setReceivedEventSpecimenId(long receivedEventSpecimenId) {
this.receivedEventSpecimenId = receivedEventSpecimenId;
}
/**
* Gets the received event user id.
*
* @return the received event user id
*/
public long getReceivedEventUserId() {
return this.receivedEventUserId;
}
/**
* Gets the received event specimen id.
*
* @return the received event specimen id
*/
public long getReceivedEventSpecimenId() {
return this.receivedEventSpecimenId;
}
/**
* Sets the received event user id.
*
* @param receivedEventUserId the new received event user id
*/
public void setReceivedEventUserId(long receivedEventUserId) {
this.receivedEventUserId = receivedEventUserId;
}
/**
* Gets the storage location for specimen.
*
* @return the storage location for specimen
*/
public String getStorageLocationForSpecimen() {
return this.storageLocationForSpecimen;
}
/**
* Sets the storage location for specimen.
*
* @param storageLocationForSpecimen the new storage location for specimen
*/
public void setStorageLocationForSpecimen(String storageLocationForSpecimen) {
this.storageLocationForSpecimen = storageLocationForSpecimen;
}
/**
* Gets the storage location for aliquot specimen.
*
* @return the storage location for aliquot specimen
*/
public String getStorageLocationForAliquotSpecimen() {
return this.storageLocationForAliquotSpecimen;
}
/**
* Sets the storage location for aliquot specimen.
*
* @param storageLocationForAliquotSpecimen the new storage location for aliquot specimen
*/
public void setStorageLocationForAliquotSpecimen(String storageLocationForAliquotSpecimen) {
this.storageLocationForAliquotSpecimen = storageLocationForAliquotSpecimen;
}
/**
* Gets the tissue side.
*
* @return the tissue side
*/
public String getTissueSide() {
return this.tissueSide;
}
/**
* Sets the tissue side.
*
* @param tissueSide the new tissue side
*/
public void setTissueSide(String tissueSide) {
this.tissueSide = tissueSide;
}
/**
* Gets the pathological status.
*
* @return the pathological status
*/
public String getPathologicalStatus() {
return this.pathologicalStatus;
}
/**
* Sets the pathological status.
*
* @param pathologicalStatus the new pathological status
*/
public void setPathologicalStatus(String pathologicalStatus) {
this.pathologicalStatus = pathologicalStatus;
}
/* (non-Javadoc)
* @see org.apache.struts.action.ActionForm#validate(org.apache.struts.action.ActionMapping, javax.servlet.http.HttpServletRequest)
*/
public ActionErrors validate(ActionMapping mapping, HttpServletRequest request) {
final ActionErrors errors = new ActionErrors();
final Validator validator = new Validator();
double aliquotQuantity = 0;
double initialQuantity = 0;
try {
if (validator.isEmpty(this.className)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.type")));
}
// if(this.labelGenType.equals("2") && validator.isEmpty(this.labelFormat))
// {
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "collectionProtocol.labelformat", ApplicationProperties
// .getValue("collectionProtocol.labelformat")));
// }
if (validator.isEmpty(this.type)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.subType")));
}
final List specimenClassList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_SPECIMEN_CLASS, null);
if (!Validator.isEnumeratedValue(specimenClassList, this.className)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.type")));
}
if (!Validator.isEnumeratedValue(AppUtility.getSpecimenTypes(this.className), this.type)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.subType")));
}
if (!validator.isEmpty(this.quantity)) {
try {
this.quantity = new BigDecimal(this.quantity).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(this.quantity, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.quantity")));
}
} else {
if (!validator.isNumeric(this.quantity, 0)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.info(exp.getMessage(), exp);
exp.printStackTrace();
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
} else {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
if (!this.quantityPerAliquot.equals("")) {
if (this.quantityPerAliquot != null && this.quantityPerAliquot.trim().length() != 0) {
try {
this.quantityPerAliquot = new BigDecimal(this.quantityPerAliquot).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(this.quantityPerAliquot.trim())) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
} else {
if (!validator.isPositiveNumeric(this.quantityPerAliquot.trim(), 1)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
exp.printStackTrace();
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
}
}
if (!this.noOfAliquots.equals("")) {
this.noOfAliquots = AppUtility.isValidCount(this.noOfAliquots, errors);
if (!validator.isNumeric(this.noOfAliquots, 1)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("specimenArrayAliquots.noOfAliquots")));
} else {
try {
if (this.quantityPerAliquot.equals("")) {
if (this.quantity.equals("0") || this.quantity.equals("0")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.invalid", ApplicationProperties.getValue("specimen.quantity")));
} else {
aliquotQuantity =
Double.parseDouble(this.quantity) / Double.parseDouble(this.noOfAliquots);
initialQuantity =
Double.parseDouble(this.quantity)
- (aliquotQuantity * Double.parseDouble(this.noOfAliquots));
}
} else {
aliquotQuantity = Double.parseDouble(this.quantityPerAliquot);
initialQuantity = Double.parseDouble(this.quantity);
initialQuantity =
initialQuantity - (aliquotQuantity * Double.parseDouble(this.noOfAliquots));
}
if (initialQuantity < 0) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.invalid",
ApplicationProperties.getValue("cpbasedentry.quantityperaliquot")));
}
// if(this.labelGenTypeForAliquot.equals("2") &&
// validator.isEmpty(this.labelFormatForAliquot))
// {
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "sp.req.aliquot.labelformat", ApplicationProperties
// .getValue("sp.req.aliquot.labelformat")));
// }
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
}
}
if (this.tissueSite.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.tissueSite")));
}
if (this.tissueSide.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.tissueSide")));
}
if (this.noOfAliquots != null && !this.noOfAliquots.equals("")) {
if (!this.storageLocationForAliquotSpecimen.equals("Auto")
&& !this.storageLocationForAliquotSpecimen.equals("Manual")
&& !this.storageLocationForAliquotSpecimen.equals("Virtual")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("cpbasedentry.aliquotstoragelocation")));
}
}
if (!this.storageLocationForSpecimen.equals("Auto")
&& !this.storageLocationForSpecimen.equals("Manual")
&& !this.storageLocationForSpecimen.equals("Virtual")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("cpbasedentry.specimenstoragelocation")));
}
if (this.pathologicalStatus.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("specimen.pathologicalStatus")));
}
final List tissueSiteList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_TISSUE_SITE, null);
if (!Validator.isEnumeratedValue(tissueSiteList, this.tissueSite)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.tissueSite")));
}
final List tissueSideList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_TISSUE_SIDE, null);
if (!Validator.isEnumeratedValue(tissueSideList, this.tissueSide)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.tissueSide")));
}
final List pathologicalStatusList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_PATHOLOGICAL_STATUS, null);
if (!Validator.isEnumeratedValue(pathologicalStatusList, this.pathologicalStatus)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid",
ApplicationProperties.getValue("specimen.pathologicalStatus")));
}
if ((this.collectionEventUserId) == 0L) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError("errors.item.required", "Collection Event's user"));
}
// checks the collectionProcedure
if (!validator.isValidOption(this.getCollectionEventCollectionProcedure())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.collectionprocedure");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.item.required", message));
}
final List procedureList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_COLLECTION_PROCEDURE, null);
if (!Validator.isEnumeratedValue(
procedureList, this.getCollectionEventCollectionProcedure())) {
final String message = ApplicationProperties.getValue("cpbasedentry.collectionprocedure");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
// Container validation
if (!validator.isValidOption(this.getCollectionEventContainer())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.container");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.item.required", message));
}
final List containerList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_CONTAINER, null);
if (!Validator.isEnumeratedValue(containerList, this.getCollectionEventContainer())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.container");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
if ((this.receivedEventUserId) == 0L) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError("errors.item.required", "Received Event's user"));
}
final List qualityList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_RECEIVED_QUALITY, null);
if (!Validator.isEnumeratedValue(qualityList, this.receivedEventReceivedQuality)) {
final String message = ApplicationProperties.getValue("cpbasedentry.receivedquality");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
if (this.className.equals(Constants.MOLECULAR)) {
if (!validator.isDouble(this.concentration, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.concentration")));
}
}
if (this.noOfDeriveSpecimen >= 1) {
boolean bSpecimenClass = false;
boolean bSpecimenType = false;
// boolean validateLabel = false;
// boolean labelGenType = false;
// boolean labelFormat = false;
final Map deriveSpecimenMap = this.deriveSpecimenMap();
final Iterator it = deriveSpecimenMap.keySet().iterator();
while (it.hasNext()) {
final String key = (String) it.next();
String mapValue = (String) deriveSpecimenMap.get(key);
if (!bSpecimenClass) {
if (key.indexOf("specimenClass") != -1 && !validator.isValidOption(mapValue)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.selected",
ApplicationProperties.getValue("collectionprotocol.specimenclass")));
bSpecimenClass = true;
}
}
// if(!labelGenType)
// {
// if ((key.indexOf("_labelGenType")) != -1 && mapValue != null)
// {
// if (mapValue.equals("2"))
// {
// validateLabel=true;
// labelGenType = true;
// }
// }
//
// }
// if(!labelFormat && labelGenType)
// {
// if(validateLabel && (key.indexOf("_labelFormat")) != -1 &&
// validator.isEmpty(mapValue))
// {
// labelFormat = true;
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "sp.req.derivative.labelformat", ApplicationProperties
// .getValue("sp.req.derivative.labelformat")));
// }
// }
if ((key.indexOf("_concentration")) != -1 && mapValue != null) {
mapValue = new BigDecimal(mapValue).toPlainString();
if (!validator.isDouble(mapValue, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("specimen.concentration")));
}
}
if (!bSpecimenType) {
if (key.indexOf("specimenType") != -1 && !validator.isValidOption(mapValue)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.selected",
ApplicationProperties.getValue("collectionprotocol.specimetype")));
bSpecimenType = true;
}
}
if ((key.indexOf("_quantity")) != -1) {
if (!validator.isEmpty(mapValue)) {
try {
mapValue = new BigDecimal(mapValue).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(mapValue, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("specimen.quantity")));
}
} else {
if (!validator.isNumeric(mapValue, 0)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"cpbasedentry.derivedspecimen.quantity")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("cpbasedentry.derivedspecimen.quantity")));
}
} else {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("cpbasedentry.derivedspecimen.quantity")));
}
}
}
}
} catch (final Exception excp) {
CreateSpecimenTemplateForm.logger.error(excp.getMessage(), excp);
excp.printStackTrace();
}
return errors;
}
/**
* Derive specimen map.
*
* @return the map
*/
public Map deriveSpecimenMap() {
int iCount;
boolean genLabel = false;
final Map deriveSpecimenMap = new LinkedHashMap<String, String>();
for (iCount = 1; iCount <= this.noOfDeriveSpecimen; iCount++) {
String key = null;
key = "DeriveSpecimenBean:" + iCount + "_specimenClass";
final String specimenClass = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, specimenClass);
key = "DeriveSpecimenBean:" + iCount + "_id";
final String id = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, id);
key = "DeriveSpecimenBean:" + iCount + "_specimenType";
final String specimenType = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, specimenType);
key = "DeriveSpecimenBean:" + iCount + "_quantity";
final String quantity = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, quantity);
key = "DeriveSpecimenBean:" + iCount + "_concentration";
final String conc = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, conc);
key = "DeriveSpecimenBean:" + iCount + "_storageLocation";
final String storageLocation = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, storageLocation);
key = "DeriveSpecimenBean:" + iCount + "_labelFormat";
final String labelFormat = (String) this.deriveSpecimenValues.get(key);
deriveSpecimenMap.put(key, labelFormat);
}
return deriveSpecimenMap;
}
/**
* Gets the node key.
*
* @return the node key
*/
public String getNodeKey() {
return this.nodeKey;
}
/**
* Sets the node key.
*
* @param nodeKey the new node key
*/
public void setNodeKey(String nodeKey) {
this.nodeKey = nodeKey;
}
/* (non-Javadoc)
* @see edu.wustl.common.actionForm.AbstractActionForm#setAddNewObjectIdentifier(java.lang.String, java.lang.Long)
*/
@Override
public void setAddNewObjectIdentifier(String arg0, Long arg1) {
// TODO Auto-generated method stub
}
/** For SCG labeling,this will be exposed through API and not in the model. */
private String labelFormat;
/**
* For SCG labeling,this will be exposed through API and not in the model.
*
* @return the label format
*/
public String getLabelFormat() {
return this.labelFormat;
}
/**
* For SCG labeling,this will be exposed through API and not in the model.
*
* @param labelFormat the label format
*/
public void setLabelFormat(String labelFormat) {
this.labelFormat = labelFormat;
}
/**
* Gets the label format for aliquot.
*
* @return the label format for aliquot
*/
public String getLabelFormatForAliquot() {
return labelFormatForAliquot;
}
/**
* Sets the label format for aliquot.
*
* @param labelFormatForAliquot the new label format for aliquot
*/
public void setLabelFormatForAliquot(String labelFormatForAliquot) {
this.labelFormatForAliquot = labelFormatForAliquot;
}
/** The label format for aliquot. */
private String labelFormatForAliquot;
}
/**
* StorageContainerHDAO is used to add Storage Container information into the database using
* Hibernate.
*
* @author Vaishali_Khandelwal
*/
public class SimilarContainerBizLogic extends StorageContainerBizLogic {
private final transient Logger logger = Logger.getCommonLogger(SimilarContainerBizLogic.class);
/**
* Saves the storageContainer object in the database.
*
* @param dao : dao
* @param obj The storageType object to be saved.
* @param sessionDataBean The session in which the object is saved.
* @throws BizLogicException : BizLogicException
*/
@Override
protected void insert(Object obj, DAO dao, SessionDataBean sessionDataBean)
throws BizLogicException {
final StorageContainer container = (StorageContainer) obj;
container.setActivityStatus(Status.ACTIVITY_STATUS_ACTIVE.toString());
final List contList = new ArrayList();
final int noOfContainers = container.getNoOfContainers().intValue();
final Map simMap = container.getSimilarContainerMap();
// --- common values for all similar containers ---
new StorageTypeBizLogic().loadStorageType(dao, container);
this.logger.debug(simMap);
final int checkButton = Integer.parseInt((String) simMap.get("checkedButton"));
// int checkButton = 1;
try {
for (int i = 1; i <= noOfContainers; i++) {
final String simContPrefix = "simCont:" + i + "_";
final String IdKey = simContPrefix + "Id";
final String parentContNameKey = simContPrefix + "parentContName";
final String contName = (String) simMap.get(simContPrefix + "name");
String barcode = (String) simMap.get(simContPrefix + "barcode");
if (barcode != null && barcode.equals("")) // this is done
// because barcode
// is empty string
// set by struts
{ // but barcode in DB is unique but can be null.
barcode = null;
}
final StorageContainer cont = new StorageContainer(container);
if (checkButton == 1) // site
{
final String siteId = (String) simMap.get(simContPrefix + "siteId");
final String siteName = (String) simMap.get(simContPrefix + "siteName");
final Site site = new Site();
/**
* Start: Change for API Search --- Jitendra 06/10/2006 In Case of Api Search, previoulsy
* it was failing since there was default class level initialization on domain object. For
* example in User object, it was initialized as protected String lastName=""; So we
* removed default class level initialization on domain object and are initializing in
* method setAllValues() of domain object. But in case of Api Search, default values will
* not get set since setAllValues() method of domainObject will not get called. To avoid
* null pointer exception, we are setting the default values same as we were setting in
* setAllValues() method of domainObject.
*/
ApiSearchUtil.setSiteDefault(site);
site.setId(new Long(siteId));
site.setName(siteName);
cont.setSite(site);
new SiteBizLogic().loadSite(dao, cont);
} else
// parentContainer
{
StorageContainer parentContainer = null;
final String parentId = (String) simMap.get(simContPrefix + "parentContainerId");
final String posOne = (String) simMap.get(simContPrefix + "positionDimensionOne");
final String posTwo = (String) simMap.get(simContPrefix + "positionDimensionTwo");
final Object object =
dao.retrieveById(StorageContainer.class.getName(), new Long(parentId));
if (object != null) {
parentContainer = (StorageContainer) object;
cont.setSite(parentContainer.getSite());
}
final IFactory factory = AbstractFactoryConfig.getInstance().getBizLogicFactory();
final StorageContainerBizLogic storageContainerBizLogic =
(StorageContainerBizLogic) factory.getBizLogic(Constants.STORAGE_CONTAINER_FORM_ID);
storageContainerBizLogic.checkContainer(
dao,
StorageContainerUtil.setparameterList(
parentContainer.getId().toString(), posOne, posTwo, false),
sessionDataBean,
null);
ContainerPosition cntPos = cont.getLocatedAtPosition();
if (cntPos == null) {
cntPos = new ContainerPosition();
}
cntPos.setPositionDimensionOne(new Integer(posOne));
cntPos.setPositionDimensionTwo(new Integer(posTwo));
cntPos.setOccupiedContainer(cont);
cntPos.setParentContainer(parentContainer);
cont.setLocatedAtPosition(cntPos);
// Have to set Site object for parentContainer
SiteBizLogic siteBiz = new SiteBizLogic();
siteBiz.loadSite(dao, parentContainer);
siteBiz.loadSiteFromContainerId(dao, parentContainer);
cntPos.setPositionDimensionOne(new Integer(posOne));
cntPos.setPositionDimensionTwo(new Integer(posTwo));
cntPos.setOccupiedContainer(cont);
cont.setLocatedAtPosition(cntPos);
cont.setSite(parentContainer.getSite());
this.logger.debug("^^>> " + parentContainer.getSite());
simMap.put(parentContNameKey, parentContainer.getName());
}
// StorageContainer cont = new StorageContainer();
cont.setName(contName); // <<----
cont.setBarcode(barcode); // <<----
// by falguni
// Storage container label generator
// Call Storage container label generator if its specified to
// use automatic label generator
if (edu.wustl.catissuecore.util.global.Variables.isStorageContainerLabelGeneratorAvl) {
LabelGenerator storagecontLblGenerator;
storagecontLblGenerator =
LabelGeneratorFactory.getInstance(
Constants.STORAGECONTAINER_LABEL_GENERATOR_PROPERTY_NAME);
try {
storagecontLblGenerator.setLabel(cont);
} catch (LabelGenException e) {
this.logger.error(e.getMessage(), e);
}
}
simMap.put(simContPrefix + "name", cont.getName());
this.logger.debug(
"cont.getCollectionProtocol().size() " + cont.getCollectionProtocolCollection().size());
cont.setActivityStatus("Active");
dao.insert(cont.getCapacity());
dao.insert(cont);
contList.add(cont);
container.setId(cont.getId());
simMap.put(IdKey, cont.getId().toString());
}
} catch (final DAOException daoExp) {
this.logger.error(daoExp.getMessage(), daoExp);
daoExp.printStackTrace();
throw this.getBizLogicException(daoExp, daoExp.getErrorKeyName(), daoExp.getMsgValues());
} catch (final NameGeneratorException e) {
this.logger.error(e.getMessage(), e);
e.printStackTrace();
throw this.getBizLogicException(e, "utility.error", "");
}
}
/**
* @param obj : obj
* @param dao : dao
* @param sessionDataBean : sessionDataBean
* @throws BizLogicException : BizLogicException
*/
@Override
public synchronized void postInsert(Object obj, DAO dao, SessionDataBean sessionDataBean)
throws BizLogicException {
final StorageContainer container = (StorageContainer) obj;
try {
final int noOfContainers = container.getNoOfContainers().intValue();
final Map simMap = container.getSimilarContainerMap();
final int checkButton = Integer.parseInt((String) simMap.get("checkedButton"));
for (int i = 1; i <= noOfContainers; i++) {
final String simContPrefix = "simCont:" + i + "_";
final String contName = (String) simMap.get(simContPrefix + "name");
final String identifier = (String) simMap.get(simContPrefix + "Id");
final StorageContainer cont = new StorageContainer(container);
// Logger.out.info("contName:" + contName);
cont.setId(new Long(identifier));
cont.setName(contName); // by falguni ...Container name is
// generated via label generator.
if (checkButton == 2) {
final String parentId = (String) simMap.get(simContPrefix + "parentContainerId");
final String posOne = (String) simMap.get(simContPrefix + "positionDimensionOne");
final String posTwo = (String) simMap.get(simContPrefix + "positionDimensionTwo");
final String parentContName = (String) simMap.get(simContPrefix + "parentContName");
final StorageContainer parentContainer = new StorageContainer();
parentContainer.setId(new Long(parentId));
parentContainer.setName(parentContName);
final ContainerPosition cntPos = cont.getLocatedAtPosition();
cntPos.setPositionDimensionOne(new Integer(posOne));
cntPos.setPositionDimensionTwo(new Integer(posTwo));
cntPos.setOccupiedContainer(cont);
cntPos.setParentContainer(parentContainer);
// cont.setParent(parentContainer); // <<----
}
}
} catch (final Exception e) {
this.logger.error(e.getMessage(), e);
e.printStackTrace();
}
super.postInsert(obj, dao, sessionDataBean);
}
/**
* Overriding the parent class's method to validate the enumerated attribute values
*
* @param obj : obj
* @param dao : dao
* @param operation : operation
* @throws BizLogicException : BizLogicException
* @return boolean
*/
@Override
protected boolean validate(Object obj, DAO dao, String operation) throws BizLogicException {
try {
final StorageContainer container = (StorageContainer) obj;
final Map similarContainerMap = container.getSimilarContainerMap();
final String containerPrefixKey = "simCont:";
final String parentContainerId = "_parentContainerId";
final List positionsToBeAllocatedList = new ArrayList();
final List usedPositionsList = new ArrayList();
for (int i = 1; i <= container.getNoOfContainers().intValue(); i++) {
StorageContainerUtil.prepareContainerMap(
dao,
similarContainerMap,
containerPrefixKey,
positionsToBeAllocatedList,
usedPositionsList,
i,
parentContainerId);
}
/*for (int i = 0; i < positionsToBeAllocatedList.size(); i++)
{
StorageContainerUtil.allocatePositionToSingleContainerOrSpecimen(
positionsToBeAllocatedList.get(i), similarContainerMap, usedPositionsList,
containerPrefixKey, parentContainerId);
}*/
if (container.getNoOfContainers().intValue() > 1 && similarContainerMap.size() > 0) {
for (int i = 1; i <= container.getNoOfContainers().intValue(); i++) {
final int checkedButtonStatus =
Integer.parseInt((String) similarContainerMap.get("checkedButton"));
final String siteId = (String) similarContainerMap.get("simCont:" + i + "_siteId");
if (checkedButtonStatus == 2 || siteId == null) {
final String parentContId =
(String) similarContainerMap.get("simCont:" + i + "_parentContainerId");
final String positionDimensionOne =
(String) similarContainerMap.get("simCont:" + i + "_positionDimensionOne");
final String positionDimensionTwo =
(String) similarContainerMap.get("simCont:" + i + "_positionDimensionTwo");
if (parentContId.equals("-1")
|| positionDimensionOne.equals("-1")
|| positionDimensionTwo.equals("-1")) {
throw this.getBizLogicException(
null,
"errors.item.required",
ApplicationProperties.getValue("similarcontainers.location"));
}
} else {
if (siteId.equals("-1")) {
throw this.getBizLogicException(
null,
"errors.item.required",
ApplicationProperties.getValue("storageContainer.site"));
}
}
}
}
} catch (final ApplicationException exp) {
this.logger.error(exp.getMessage(), exp);
exp.printStackTrace();
throw this.getBizLogicException(exp, exp.getErrorKeyName(), exp.getMsgValues());
}
return true;
}
/**
* Called from DefaultBizLogic to get ObjectId for authorization check (non-Javadoc)
*
* @param dao : dao
* @param domainObject : domainObject
* @return String
* @see edu.wustl.common.bizlogic.DefaultBizLogic#getObjectId(edu.wustl.common.dao.DAO,
* java.lang.Object)
*/
@Override
public String getObjectId(DAO dao, Object domainObject) {
final StringBuffer stringBuffer = new StringBuffer();
stringBuffer.append(Site.class.getName());
try {
if (domainObject instanceof StorageContainer) {
final StorageContainer storageContainer = (StorageContainer) domainObject;
final Map similarContainerMap = storageContainer.getSimilarContainerMap();
final Object keys[] = similarContainerMap.keySet().toArray();
final Set<Long> scIds = new HashSet<Long>();
final Set<Long> siteIds = new HashSet<Long>();
for (final Object key : keys) {
if (key.toString().contains("parentContainerId")) {
scIds.add(Long.valueOf(similarContainerMap.get(key).toString()));
}
if (key.toString().contains("siteId")) {
siteIds.add(Long.valueOf(similarContainerMap.get(key).toString()));
}
}
for (final Long scId : scIds) {
Site site = null;
Object object = null;
object = dao.retrieveById(StorageContainer.class.getName(), scId);
if (object != null) {
final StorageContainer parentContainer = (StorageContainer) object;
site = parentContainer.getSite();
}
if (site != null) {
if (!siteIds.contains(site.getId())) {
stringBuffer.append("_" + site.getId().toString());
}
siteIds.add(site.getId());
}
}
for (final Long siteId : siteIds) {
stringBuffer.append("_" + siteId.toString());
}
}
} catch (final DAOException daoExp) {
this.logger.error(daoExp.getMessage(), daoExp);
daoExp.printStackTrace();
}
return stringBuffer.toString();
}
/**
* To get PrivilegeName for authorization check from 'PermissionMapDetails.xml' (non-Javadoc)
*
* @param domainObject : domainObject
* @return String
* @see edu.wustl.common.bizlogic.DefaultBizLogic#getPrivilegeName(java.lang.Object)
*/
@Override
protected String getPrivilegeKey(Object domainObject) {
return new StorageContainerBizLogic().getPrivilegeKey(domainObject);
}
}
/** @author renuka_bajpai */
public class ConflictResolverAction extends BaseAction {
/** logger. */
private final transient Logger logger = Logger.getCommonLogger(ConflictResolverAction.class);
/**
* Overrides the executeSecureAction method of SecureAction class.
*
* @param mapping object of ActionMapping
* @param form object of ActionForm
* @param request object of HttpServletRequest
* @param response object of HttpServletResponse
* @throws Exception generic exception
* @return ActionForward : ActionForward
*/
@Override
public ActionForward executeAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
final HttpSession session = request.getSession();
final String participantIdToAssociate =
(String) session.getAttribute(Constants.PARTICIPANT_ID_TO_ASSOCIATE);
final String specimenCollGrpId = (String) session.getAttribute(Constants.SCG_ID_TO_ASSOCIATE);
final String reportQueueId = request.getParameter(Constants.REPORT_ID);
final String button = request.getParameter(Constants.CONFLICT_BUTTON);
String errorMessage = null;
// overwrite the existing report
if (button.trim().equalsIgnoreCase(Constants.OVERWRITE_REPORT)) {
this.overwriteReport(request, reportQueueId);
}
// Ignore new Report
if (button.trim().equalsIgnoreCase(Constants.IGNORE_NEW_REPORT)) {
this.ignoreNewReport(reportQueueId);
}
// Creating a new Participant
if (button.trim().equalsIgnoreCase(Constants.CREATE_NEW_PARTICIPANT)) {
errorMessage = this.createNewParticipant(request, reportQueueId);
if (errorMessage != null) {
this.setActionError(request, errorMessage);
}
} else {
if (button.trim().equalsIgnoreCase(Constants.USE_SELECTED_PARTICIPANT)) {
if (participantIdToAssociate != null && !participantIdToAssociate.equals("")) {
// Associate existing participant with Report
this.createNewSCG(request, reportQueueId, participantIdToAssociate);
}
} else if (button.trim().equalsIgnoreCase(Constants.USE_SELECTED_SCG)) {
if (specimenCollGrpId != null && !specimenCollGrpId.equals("")) {
// Associate existing SCG with Report
this.associateSCGWithReport(
request, reportQueueId, participantIdToAssociate, specimenCollGrpId);
}
}
}
this.resetSessionAttributes(session);
return mapping.findForward(Constants.SUCCESS);
}
/**
* To create new participant and associate it to the report.
*
* @param request : request
* @param reportQueueId : reportQueueId
* @return String : String
* @throws Exception : Exception
*/
private String createNewParticipant(HttpServletRequest request, String reportQueueId)
throws Exception {
String errorMessage = null;
ReportLoaderQueue reportLoaderQueue = null;
reportLoaderQueue = Utility.getReportQueueObject(reportQueueId);
final Participant participant = Utility.getParticipantFromReportLoaderQueue(reportQueueId);
final IFactory factory = AbstractFactoryConfig.getInstance().getBizLogicFactory();
final ParticipantBizLogic participantBizLogic =
(ParticipantBizLogic) factory.getBizLogic(Participant.class.getName());
try {
participantBizLogic.insert(participant, this.getSessionData(request), 0);
} catch (final Exception e) {
this.logger.error(e.getMessage(), e);
// System.out.println("Error Occurred !!!!!");
errorMessage = ApplicationProperties.getValue("errors.caTies.conflict.genericmessage");
// Setting the status to NEW
// reportLoaderQueue.setParticipantCollection(null);
// reportLoaderQueue.setStatus(CaTIESConstants.
// PARTICIPANT_CREATION_ERROR);
// updateReportLoaderQueue(reportLoaderQueue,request);
return errorMessage;
}
final Collection participantColl = new HashSet();
// Adding the new participant
participantColl.add(participant);
reportLoaderQueue.setParticipantCollection(participantColl);
// The new SCG for this participant will be inserted by the
// FileProcessorThread
// Setting the status to NEW
reportLoaderQueue.setStatus(CaTIESConstants.NEW);
reportLoaderQueue.setSpecimenCollectionGroup(null);
this.updateReportLoaderQueue(reportLoaderQueue, request);
return errorMessage;
}
/**
* To associate existing participant to the report and to create new SCG.
*
* @param request : request
* @param reportQueueId : reportQueueId
* @param participantIdToAssociate : participantIdToAssociate
* @throws NumberFormatException : NumberFormatException
* @throws BizLogicException : BizLogicException
*/
private void createNewSCG(
HttpServletRequest request, String reportQueueId, String participantIdToAssociate)
throws NumberFormatException, BizLogicException {
ReportLoaderQueue reportLoaderQueue = null;
reportLoaderQueue = Utility.getReportQueueObject(reportQueueId);
// Changing the status of the report in the queue to NEW
reportLoaderQueue.setStatus(CaTIESConstants.NEW);
// Create new SCG
reportLoaderQueue.setSpecimenCollectionGroup(null);
// removing all participants from CATISSUE_REPORT_PARTICIP_REL other
// than the selected participant
final Collection participantColl = reportLoaderQueue.getParticipantCollection();
final Iterator iter = participantColl.iterator();
final Set tempColl = new HashSet();
while (iter.hasNext()) {
final Participant participant = (Participant) iter.next();
if (participant.getId().toString().equals(participantIdToAssociate.trim())) {
tempColl.add(participant);
}
}
reportLoaderQueue.setParticipantCollection(tempColl);
// Updating the report queue obj
this.updateReportLoaderQueue(reportLoaderQueue, request);
}
/**
* Associate the existing SCG to the report.
*
* @param request : request
* @param reportQueueId : reportQueueId
* @param participantIdToAssociate : participantIdToAssociate
* @param specimenCollGrpId : specimenCollGrpId
* @throws DAOException : DAOException
* @throws BizLogicException : BizLogicException
* @throws UserNotAuthorizedException : UserNotAuthorizedException
*/
private void associateSCGWithReport(
HttpServletRequest request,
String reportQueueId,
String participantIdToAssociate,
String specimenCollGrpId)
throws DAOException, BizLogicException, UserNotAuthorizedException {
Long cprId = null;
ReportLoaderQueue reportLoaderQueue = null;
reportLoaderQueue = Utility.getReportQueueObject(reportQueueId);
// Changing the status of the report in the queue to NEW
reportLoaderQueue.setStatus(CaTIESConstants.NEW);
// Associating the SCG
if (specimenCollGrpId != null && !specimenCollGrpId.equals("")) {
SpecimenCollectionGroup scg = null;
final IFactory factory = AbstractFactoryConfig.getInstance().getBizLogicFactory();
final ReportLoaderQueueBizLogic reportLoaderQueueBizLogic =
(ReportLoaderQueueBizLogic) factory.getBizLogic(ReportLoaderQueue.class.getName());
final Object object =
reportLoaderQueueBizLogic.retrieve(
SpecimenCollectionGroup.class.getName(), new Long(specimenCollGrpId));
if (object != null) {
scg = (SpecimenCollectionGroup) object;
}
cprId = scg.getCollectionProtocolRegistration().getId();
reportLoaderQueue.setSpecimenCollectionGroup(scg);
}
// Retrieving participantID if it is null
if (participantIdToAssociate == null || participantIdToAssociate.equals("")) {
final DefaultBizLogic defaultBizLogic = new DefaultBizLogic();
final Long partID =
(Long)
defaultBizLogic.retrieveAttribute(
CollectionProtocolRegistration.class.getName(),
cprId,
Constants.COLUMN_NAME_PARTICIPANT_ID);
participantIdToAssociate = partID.toString();
}
// removing all participants from CATISSUE_REPORT_PARTICIP_REL other
// than the selected participant
final Collection participantColl = reportLoaderQueue.getParticipantCollection();
final Iterator iter = participantColl.iterator();
final Set tempColl = new HashSet();
Participant participant = null;
while (iter.hasNext()) {
participant = (Participant) iter.next();
if (participant.getId().toString().equals(participantIdToAssociate.trim())) {
tempColl.add(participant);
}
}
reportLoaderQueue.setParticipantCollection(tempColl);
// Updating the report queue obj
this.updateReportLoaderQueue(reportLoaderQueue, request);
}
/**
* updating the reportloaderQueue obj.
*
* @param reportLoaderQueue : reportLoaderQueue
* @param request : request
*/
private void updateReportLoaderQueue(
ReportLoaderQueue reportLoaderQueue, HttpServletRequest request) {
try {
final IFactory factory = AbstractFactoryConfig.getInstance().getBizLogicFactory();
final ReportLoaderQueueBizLogic reportLoaderQueueBizLogic =
(ReportLoaderQueueBizLogic) factory.getBizLogic(ReportLoaderQueue.class.getName());
reportLoaderQueueBizLogic.update(
reportLoaderQueue, reportLoaderQueue, 0, this.getSessionData(request));
} catch (final Exception e) {
this.logger.error("Error Updating ReportQueue" + e);
}
}
/**
* @param request : request
* @return SessionDataBean : SessionDataBean
*/
@Override
protected SessionDataBean getSessionData(HttpServletRequest request) {
Object obj = request.getSession().getAttribute(Constants.SESSION_DATA);
/** This if loop is specific to Password Security feature. */
if (obj == null) {
obj = request.getSession().getAttribute(Constants.TEMP_SESSION_DATA);
}
if (obj != null) {
final SessionDataBean sessionData = (SessionDataBean) obj;
return sessionData;
}
return null;
}
/**
* To generate the errors.
*
* @param request : request
* @param errorMessage : errorMessage
*/
private void setActionError(HttpServletRequest request, String errorMessage) {
final ActionErrors errors = new ActionErrors();
final ActionError error = new ActionError("errors.item", errorMessage);
errors.add(ActionErrors.GLOBAL_ERROR, error);
this.saveErrors(request, errors);
}
/** @param session : session */
protected void resetSessionAttributes(HttpSession session) {
// Removing the session objects
session.removeAttribute(Constants.PARTICIPANT_ID_TO_ASSOCIATE);
session.removeAttribute(Constants.SCG_ID_TO_ASSOCIATE);
}
/**
* Ignore the new report and use the existing one.
*
* @param reportQueueId : reportQueueId
* @throws DAOException : DAOException
* @throws UserNotAuthorizedException : UserNotAuthorizedException
* @throws BizLogicException : BizLogicException
*/
protected void ignoreNewReport(String reportQueueId)
throws DAOException, UserNotAuthorizedException, BizLogicException {
// Long cprId = null;
ReportLoaderQueue reportLoaderQueue = null;
reportLoaderQueue = Utility.getReportQueueObject(reportQueueId);
final IFactory factory = AbstractFactoryConfig.getInstance().getBizLogicFactory();
final ReportLoaderQueueBizLogic reportLoaderQueueBizLogic =
(ReportLoaderQueueBizLogic) factory.getBizLogic(ReportLoaderQueue.class.getName());
// deleting the reportloaderQueue object
reportLoaderQueueBizLogic.delete(reportLoaderQueue, 0);
}
/**
* To overwrite the existing report.
*
* @param request : request
* @param reportQueueId : reportQueueId
* @throws BizLogicException : BizLogicException
* @throws NumberFormatException : NumberFormatException
* @throws BizLogicException : BizLogicException
*/
protected void overwriteReport(HttpServletRequest request, String reportQueueId)
throws NumberFormatException, BizLogicException {
ReportLoaderQueue reportLoaderQueue = null;
reportLoaderQueue = Utility.getReportQueueObject(reportQueueId);
// Changing the status of the report in the queue to NEW
reportLoaderQueue.setStatus(CaTIESConstants.OVERWRITE_REPORT);
this.updateReportLoaderQueue(reportLoaderQueue, request);
}
}
/**
* This panel is a container panel for all different panel in simple view of search results. This
* panel has a bread crumb panel for easy navigation.
*
* @author chetan_bh
*/
public class SimpleSearchResultBreadCrumbPanel extends Cab2bPanel {
private static final Logger logger =
edu.wustl.common.util.logger.Logger.getLogger(SimpleSearchResultBreadCrumbPanel.class);
private static final long serialVersionUID = 1L;
// private HashMap<String, List<AttributeInterface>> mapResultLabel = new HashMap<String,
// List<AttributeInterface>>();
private int panelCount = 0;
/** A vector of display strings for bread crumbs hyperlink. */
private Vector<String> m_vBreadCrumbs = new Vector<String>();
/** The breadcrumPanel common to all cards. */
private JXPanel m_breadCrumbPanel = null;
/**
* The panel will house cards, where each card is a panel depicting some details on the results.
*/
private JXPanel m_resultsPanel = null;
/** Action listener for bread crumbs hyperlink. */
private ActionListener breadCrumbsAL;
/** Pagination components hyperlinks action listener. */
private ActionListener hyperlinkAL;
/** Associated Data hyperlinks action listener; */
private ActionListener associatedDataAL;
// private List<AttributeInterface> attributeList = null;
private ViewSearchResultsPanel viewPanel;
private String currentBreadCrumbName;
public SimpleSearchResultBreadCrumbPanel(
IQueryResult queryResult, ViewSearchResultsPanel viewPanel) {
this.viewPanel = viewPanel;
initData();
initGUI(queryResult);
}
/** Initialize data. */
private void initData() {}
public void addPanel(JXPanel panel, String panelName) {
this.m_resultsPanel.add(panel, panelName);
}
/** Shows a panel represented by a name, by bringing that panel to the top. */
private void showPanel(String panelName) {
logger.debug("panel name : " + panelName);
CardLayout layout = (CardLayout) this.m_resultsPanel.getLayout();
layout.show(this.m_resultsPanel, panelName);
int totalCardPanels = m_resultsPanel.getComponentCount();
/** have to add My Data list summary panel */
for (int i = 0; i < totalCardPanels; i++) {
Component comp = m_resultsPanel.getComponent(i);
if (true == comp.isVisible()) {
if (comp instanceof ViewSearchResultsSimplePanel) {
ViewSearchResultsSimplePanel showingPanel =
(ViewSearchResultsSimplePanel) m_resultsPanel.getComponent(i);
showingPanel.addDataSummaryPanel();
break;
} else if (comp instanceof ResultObjectDetailsPanel) {
ResultObjectDetailsPanel showingPanel =
(ResultObjectDetailsPanel) m_resultsPanel.getComponent(i);
showingPanel.addDataSummaryPanel();
break;
}
}
}
}
/** Addes a new panel to the top of the stack of existing breadcrumbs panels. */
private void addBreadCrumbPanel(JXPanel panel, String panelName) {
this.m_breadCrumbPanel.add(panel, panelName);
}
/** @see showPanel(String panelName) */
private void showBreadcrumbPanel(String panelName) {
CardLayout layout = (CardLayout) this.m_breadCrumbPanel.getLayout();
layout.show(this.m_breadCrumbPanel, panelName);
}
/**
* Initialize GUI.
*
* @param queryResult
*/
private void initGUI(IQueryResult queryResult) {
this.setLayout(new RiverLayout(5, 5));
currentBreadCrumbName = null;
breadCrumbsAL = new BreadCrumbActionListener(this);
hyperlinkAL = new HyperlinlActionListener(this);
associatedDataAL = new AssociatedDataActionListener(this);
/*
* The breadcrumb panel should be common to all cards, and hence should
* not be part of any card.
*/
String key =
this.panelCount
+ "#"
+ edu.wustl.cab2b.common.util.Utility.getDisplayName(queryResult.getOutputEntity());
this.m_vBreadCrumbs.add(key);
this.m_breadCrumbPanel = new Cab2bPanel();
this.m_breadCrumbPanel.setLayout(new CardLayout());
BreadcrumbPanel breadCrumbPanel =
new BreadcrumbPanel(breadCrumbsAL, m_vBreadCrumbs, this.viewPanel);
currentBreadCrumbName = breadCrumbPanel.getCurrentBreadCrumbName();
this.m_breadCrumbPanel.add(breadCrumbPanel, "" + this.panelCount);
// Check if you got only one record
JXPanel simpleSearchResultPanel =
ResultPanelFactory.getResultPanel(this, queryResult, null, null);
/*
* Initialize the panel that will house all cards, and add the first
* card.
*/
this.m_resultsPanel = new Cab2bPanel();
this.m_resultsPanel.setLayout(new CardLayout());
this.m_resultsPanel.add(simpleSearchResultPanel, "" + this.panelCount);
/* Add the main result panel to the current panel. */
this.add("hfill", this.m_breadCrumbPanel);
this.add("br vfill hfill", this.m_resultsPanel);
}
/** Gets bread-crumbs hyperlink action listener. */
private ActionListener getBreadCrumbsAL() {
return breadCrumbsAL;
}
/** Sets bread-crumbs hyperlink action listener. */
public void setBreadCrumbsAL(ActionListener breadCrumbsAL) {
this.breadCrumbsAL = breadCrumbsAL;
}
/** Gets pagination elements hyperlink action listener. */
public ActionListener getHyperlinkAL() {
return hyperlinkAL;
}
/** Sets pagination elements hyperlink action listener. */
public void setHyperlinkAL(ActionListener hyperlinkAL) {
this.hyperlinkAL = hyperlinkAL;
}
/** Gets associated data hyperlink action listener. */
public ActionListener getAssociatedDataAL() {
return associatedDataAL;
}
/** Sets associated data hyperlinks action listner. */
public void setAssociatedDataAL(ActionListener associatedDataAL) {
this.associatedDataAL = associatedDataAL;
}
/**
* This action listener class should take care of creating new/existinf panels in the Card layout.
*
* @author chetan_bh
*/
private class BreadCrumbActionListener implements ActionListener {
SimpleSearchResultBreadCrumbPanel breadCrumbPanel;
public BreadCrumbActionListener(SimpleSearchResultBreadCrumbPanel panel) {
this.breadCrumbPanel = panel;
}
public void actionPerformed(ActionEvent evt) {
logger.debug("bread crumbs ActionListener : " + evt.getActionCommand());
Cab2bHyperlink hyperlink = (Cab2bHyperlink) evt.getSource();
/*
* Get the user object for the hyperlink. This contains the whole
* string.
*/
String hyperlinkText = (String) hyperlink.getUserObject();
int i;
for (i = 0; i < m_vBreadCrumbs.size(); i++) {
String breadCrumbValue = (String) m_vBreadCrumbs.get(i);
if (breadCrumbValue.trim().equals(hyperlinkText.trim())) {
break;
}
}
panelCount = i++;
for (int j = i; j < m_vBreadCrumbs.size(); j++) {
m_vBreadCrumbs.remove(j--);
m_resultsPanel.remove(i);
}
/*
* Get the number from the hyperlink text and use that to show the
* panel.
*/
String strIndex = hyperlinkText.substring(0, hyperlinkText.indexOf('#'));
breadCrumbPanel.showPanel(strIndex);
BreadcrumbPanel breadcrumbPanel =
new BreadcrumbPanel(
breadCrumbPanel.getBreadCrumbsAL(), m_vBreadCrumbs, this.breadCrumbPanel.viewPanel);
currentBreadCrumbName = breadcrumbPanel.getCurrentBreadCrumbName();
this.breadCrumbPanel.addBreadCrumbPanel(breadcrumbPanel, strIndex);
this.breadCrumbPanel.showBreadcrumbPanel(strIndex);
}
}
/**
* This action listener class should take care of creating new/existing panels in the Card layout.
*
* @author chetan_bh
*/
private class HyperlinlActionListener implements ActionListener {
SimpleSearchResultBreadCrumbPanel searchPanel;
public HyperlinlActionListener(SimpleSearchResultBreadCrumbPanel searchPanel) {
this.searchPanel = searchPanel;
}
public void actionPerformed(ActionEvent evt) {
Cab2bHyperlink<JPageElement> hyperlink = (Cab2bHyperlink<JPageElement>) evt.getSource();
String hyperlinkText = hyperlink.getText();
JPageElement jPageElement = hyperlink.getUserObject();
PageElement pageElement = jPageElement.getPageElement();
/* Get the data row corresponding to the clicked element. */
Vector recordListUserObject = (Vector) pageElement.getUserObject();
DataRow dataRow = (DataRow) recordListUserObject.get(0);
IRecord record = (IRecord) recordListUserObject.get(1);
ViewSearchResultsSimplePanel currentPanel =
(ViewSearchResultsSimplePanel) m_resultsPanel.getComponent(panelCount);
/*
* Refresh the breadcrumb vector, and pass that instance onto a new
* instance of the breadcrumb panel.
*/
int currentCount = ++panelCount;
m_vBreadCrumbs.add(currentCount + "#" + hyperlinkText);
BreadcrumbPanel breadcrumbPanel =
new BreadcrumbPanel(getBreadCrumbsAL(), m_vBreadCrumbs, this.searchPanel.viewPanel);
currentBreadCrumbName = hyperlinkText;
JXPanel detailsPanel =
ResultPanelFactory.getSearchResultPanel(
searchPanel,
record,
dataRow,
currentPanel.getIncomingAssociationCollection(),
currentPanel.getIntraModelAssociationCollection());
addBreadCrumbPanel(breadcrumbPanel, "" + currentCount);
showBreadcrumbPanel("" + currentCount);
addPanel(detailsPanel, "" + currentCount);
showPanel("" + currentCount);
}
}
/**
* This action listener is to handle actions on associated data hyperlinks.
*
* @author chetan_bh
*/
private class AssociatedDataActionListener implements ActionListener {
private String breadCrumbText;
SimpleSearchResultBreadCrumbPanel breadCrumbPanel;
public AssociatedDataActionListener(SimpleSearchResultBreadCrumbPanel panel) {
this.breadCrumbPanel = panel;
}
public void actionPerformed(ActionEvent actionEvent) {
Cab2bHyperlink hyperlink = (Cab2bHyperlink) actionEvent.getSource();
/* Get the user object associated with that source. */
final HyperLinkUserObject hyperLinkUserObject =
(HyperLinkUserObject) hyperlink.getUserObject();
IQuery tempQuery = null;
AbstractAssociatedDataPanel linkContainer =
(AbstractAssociatedDataPanel) hyperlink.getParent();
try {
tempQuery = linkContainer.getQuery((hyperLinkUserObject.getAssociation()));
} catch (RemoteException e) {
CommonUtils.handleException(e, breadCrumbPanel, true, true, true, false);
}
final IQuery query = tempQuery;
breadCrumbText = Utility.getDisplayName(hyperLinkUserObject.getTargetEntity());
/* Get result by executing the Query in a worker thread. */
CustomSwingWorker swingWorker =
new CustomSwingWorker((JXPanel) breadCrumbPanel, SimpleSearchResultBreadCrumbPanel.this) {
IQueryResult queryResult = null;
protected void doNonUILogic() throws Exception {
queryResult = CommonUtils.executeQuery((ICab2bQuery) query);
}
protected void doUIUpdateLogic() throws RuntimeException {
/*
* Get attributes and set in map, for later when the user is
* navigating, and for now directly set it.
*/
IAssociation association = hyperLinkUserObject.getAssociation();
IDataRow parentDataRow = hyperLinkUserObject.getParentDataRow();
currentBreadCrumbName = breadCrumbText;
JXPanel resultPanel =
ResultPanelFactory.getResultPanel(
breadCrumbPanel, queryResult,
parentDataRow, association);
addToPanel(resultPanel, breadCrumbText);
}
};
if (query != null) {
swingWorker.start();
} else {
addToPanel(ResultPanelFactory.getNoResultFoundPopup(breadCrumbText), breadCrumbText);
}
}
}
/**
* @param simpleSearchResultPanelNew
* @param breadCrumbText
*/
private void addToPanel(JXPanel simpleSearchResultPanelNew, String breadCrumbText) {
int currentCount = ++panelCount;
addPanel(simpleSearchResultPanelNew, "" + currentCount);
showPanel("" + currentCount);
/*
* Also we need to refresh the breadcrumb panel,so do the same with the
* breadcrumb panel.
*/
m_vBreadCrumbs.add(currentCount + "#" + breadCrumbText);
BreadcrumbPanel breadcrumbPanel =
new BreadcrumbPanel(getBreadCrumbsAL(), m_vBreadCrumbs, this.viewPanel);
currentBreadCrumbName = breadCrumbText;
addBreadCrumbPanel(breadcrumbPanel, "" + currentCount);
showBreadcrumbPanel("" + currentCount);
}
/** @return the currentBreadCrumbName */
public String getCurrentBreadCrumbName() {
return currentBreadCrumbName;
}
}
/** @author mandar_deshmukh Handles attributes associated with a review event of a cell specimen. */
public class CellSpecimenReviewParametersForm extends SpecimenEventParametersForm {
private static final long serialVersionUID = 1L;
/** logger Logger - Generic logger. */
private static Logger logger = Logger.getCommonLogger(CellSpecimenReviewParametersForm.class);
/** Percentage of histologically evident neoplastic cells present in the specimen. */
protected String neoplasticCellularityPercentage;
/** Percentage of viable cells in the specimen. */
protected String viableCellPercentage;
/**
* Returns the percentage of histologically evident neoplastic cells present in the specimen.
*
* @return The percentage of histologically evident neoplastic cells present in the specimen.
* @see #setNeoplasticCellularityPercentage(double)
*/
public String getNeoplasticCellularityPercentage() {
return this.neoplasticCellularityPercentage;
}
/**
* Sets the percentage of histologically evident neoplastic cells present in the specimen.
*
* @param neoplasticCellularityPercentage the percentage of histologically evident neoplastic
* cells present in the specimen.
* @see #getNeoplasticCellularityPercentage()
*/
public void setNeoplasticCellularityPercentage(String neoplasticCellularityPercentage) {
this.neoplasticCellularityPercentage = neoplasticCellularityPercentage;
}
/**
* Returns the percentage of viable cells in the specimen.
*
* @return The percentage of viable cells in the specimen.
* @see #setViableCellPercentage(Double)
*/
public String getViableCellPercentage() {
return this.viableCellPercentage;
}
/**
* Sets the percentage of viable cells in the specimen.
*
* @param viableCellPercentage the percentage of viable cells in the specimen.
* @see #getViableCellPercentage()
*/
public void setViableCellPercentage(String viableCellPercentage) {
this.viableCellPercentage = viableCellPercentage;
}
// ----- SUPERCLASS METHODS
/**
* @see edu.wustl.catissuecore.actionForm.AbstractActionForm#getFormId()
* @return CELL_SPECIMEN_REVIEW_PARAMETERS_FORM_ID
*/
@Override
public int getFormId() {
return Constants.CELL_SPECIMEN_REVIEW_PARAMETERS_FORM_ID;
}
/**
* @see
* edu.wustl.catissuecore.actionForm.AbstractActionForm#setAllValues(edu.wustl.catissuecore.domain.AbstractDomainObject)
* @param abstractDomain An object of Specimen class.
*/
@Override
public void setAllValues(AbstractDomainObject abstractDomain) {
super.setAllValues(abstractDomain);
final CellSpecimenReviewParameters cellSpecimenReviewParametersObject =
(CellSpecimenReviewParameters) abstractDomain;
this.neoplasticCellularityPercentage =
CommonUtilities.toString(
cellSpecimenReviewParametersObject.getNeoplasticCellularityPercentage());
this.viableCellPercentage =
CommonUtilities.toString(cellSpecimenReviewParametersObject.getViableCellPercentage());
}
/**
* Overrides the validate method of ActionForm.
*
* @return error ActionErrors instance
* @param mapping Actionmapping instance
* @param request HttpServletRequest instance
*/
@Override
public ActionErrors validate(ActionMapping mapping, HttpServletRequest request) {
final ActionErrors errors = super.validate(mapping, request);
final Validator validator = new Validator();
try {
// checks the neoplasticCellularityPercentage
if (!Validator.isEmpty(this.neoplasticCellularityPercentage)
&& !validator.isDouble(this.neoplasticCellularityPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"cellspecimenreviewparameters.neoplasticcellularitypercentage")));
}
// checks the viableCellPercentage
if (!Validator.isEmpty(this.viableCellPercentage)
&& !validator.isDouble(this.viableCellPercentage, false)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"cellspecimenreviewparameters.viablecellpercentage")));
}
} catch (final Exception excp) {
CellSpecimenReviewParametersForm.logger.error(excp.getMessage(), excp);
excp.printStackTrace();
}
return errors;
}
/** Method for reset class attributes */
@Override
protected void reset() {
// super.reset();
// this.neoplasticCellularityPercentage = null;
// this.viableCellPercentage = null;
}
@Override
public void setAddNewObjectIdentifier(String arg0, Long arg1) {
// TODO Auto-generated method stub
}
}
/**
* @author ravindra_jain creation date : 14th April, 2008
* @version 1.0
*/
public final class PrivilegeManager {
/** logger Logger - Generic logger. */
private static org.apache.log4j.Logger logger = Logger.getLogger(PrivilegeManager.class);
/** Singleton instance of PrivilegeCacheManager. */
private static PrivilegeManager instance = new PrivilegeManager();
/** the map of login name and corresponding PrivilegeCache. */
private Map<String, PrivilegeCache> privilegeCaches;
/** privilegeUtility. */
private PrivilegeUtility privilegeUtility;
/** lazyobjs. */
private List<String> lazyObjects;
/** classes. */
private List<String> classes;
/** eager objects. */
private List<String> eagerObjects;
/** isSuccessful false if ant exc occurs at instantiation. */
private static boolean isSuccessful = true;
/** private constructor to make the class singleton. */
private PrivilegeManager() {
lazyObjects = new ArrayList<String>();
classes = new ArrayList<String>();
eagerObjects = new ArrayList<String>();
privilegeUtility = new PrivilegeUtility();
privilegeCaches = new HashMap<String, PrivilegeCache>();
try {
readXmlFile("CacheableObjects.xml");
} catch (SMException e) {
isSuccessful = false;
logger.error(e.getStackTrace());
}
}
/**
* return the Singleton PrivilegeCacheManager instance.
*
* @throws SMException ex
* @return PrivilegeManager pManager
*/
public static PrivilegeManager getInstance() throws SMException {
if (!isSuccessful) {
String mess = "error occured in instantiation of PrivilegeManager";
Utility.getInstance().throwSMException(null, mess, "sm.operation.error");
}
return instance;
}
/**
* to return the PrivilegeCache object from the Map of PrivilegeCaches.
*
* @param loginName login name
* @return PrivilegeCache cache
*/
public PrivilegeCache getPrivilegeCache(String loginName) {
PrivilegeCache privilegeCache = privilegeCaches.get(loginName);
if (privilegeCache == null) {
privilegeCache = new PrivilegeCache(loginName);
privilegeCaches.put(loginName, privilegeCache);
}
return privilegeCache;
}
/**
* To get all PrivilegeCache objects.
*
* @return Collection of cache
*/
public Collection<PrivilegeCache> getPrivilegeCaches() {
return privilegeCaches.values();
}
/**
* This method will generally be called from CatissueCoreSesssionListener.sessionDestroyed. in
* order to remove the corresponding PrivilegeCache from the Session.
*
* @param userId user id
*/
public void removePrivilegeCache(String userId) {
privilegeCaches.remove(userId);
}
/**
* This Utility method is called dynamically as soon as a Site or CollectionProtocol object gets
* created through the UI & adds detials regarding that object to the PrivilegeCaches of
* appropriate users in Session.
*
* @param objectId id
* @throws SMException e
*/
private void addObjectToPrivilegeCaches(String objectId) throws SMException {
try {
Collection<PrivilegeCache> listOfPrivCaches = getPrivilegeCaches();
ProtectionElement protectionElement =
privilegeUtility.getUserProvisioningManager().getProtectionElement(objectId);
Collection<ProtectionElement> protElements = new ArrayList<ProtectionElement>();
protElements.add(protectionElement);
for (PrivilegeCache privilegeCache : listOfPrivCaches) {
Collection<ObjectPrivilegeMap> objPrivMapCol =
privilegeUtility
.getUserProvisioningManager()
.getPrivilegeMap(privilegeCache.getLoginName(), protElements);
if (!objPrivMapCol.isEmpty()) {
privilegeCache.addObject(objectId, objPrivMapCol.iterator().next().getPrivileges());
}
}
} catch (CSObjectNotFoundException e) {
Utility.getInstance().throwSMException(e, e.getMessage(), "sm.operation.error");
} catch (CSException e) {
Utility.getInstance().throwSMException(e, e.getMessage(), "sm.operation.error");
}
}
/**
* @param authorizationData data
* @param protectionObjects protObjs
* @param dynamicGroups set
* @param objectId id
* @throws SMException e
*/
public void insertAuthorizationData(
List authorizationData, Set protectionObjects, String[] dynamicGroups, String objectId)
throws SMException {
PrivilegeUtility utility = new PrivilegeUtility();
try {
utility.insertAuthorizationData(authorizationData, protectionObjects, dynamicGroups);
} catch (SMException exception) {
String mess = "Exception in insertAuthorizationData:" + exception;
Utility.getInstance().throwSMException(exception, mess, "sm.operation.error");
}
addObjectToPrivilegeCaches(objectId);
}
/**
* @param fileName name of the file
* @throws SMException e
*/
private void readXmlFile(String fileName) throws SMException {
Document doc = createDoc(fileName);
if (doc != null) {
Element root = doc.getDocumentElement();
getClasses(root);
getObjects(root);
}
}
/** @param root root */
private void getObjects(Element root) {
NodeList nodeList1 = root.getElementsByTagName("ObjectType");
int length1 = nodeList1.getLength();
for (int counter = 0; counter < length1; counter++) {
Element element = (Element) (nodeList1.item(counter));
String temp = element.getAttribute("pattern");
String lazily = element.getAttribute("cacheLazily");
if (lazily.equalsIgnoreCase("false") || lazily.equalsIgnoreCase("")) {
eagerObjects.add(temp);
} else {
lazyObjects.add(temp.replace('*', '_'));
}
}
}
/** @param root root */
private void getClasses(Element root) {
NodeList nodeList = root.getElementsByTagName("Class");
int length = nodeList.getLength();
for (int counter = 0; counter < length; counter++) {
Element element = (Element) (nodeList.item(counter));
String temp = element.getAttribute("name");
classes.add(temp);
}
}
/**
* @param fileName name of the file
* @throws SMException e
* @return Doc
*/
private Document createDoc(String fileName) throws SMException {
String xmlFileName = fileName;
Document doc = null;
InputStream inputXmlFile = this.getClass().getClassLoader().getResourceAsStream(xmlFileName);
if (inputXmlFile == null) {
logger.debug("FileNotFound with name : " + fileName);
} else {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder;
try {
builder = factory.newDocumentBuilder();
doc = builder.parse(inputXmlFile);
} catch (ParserConfigurationException excp) {
String mess = "DocumentBuilder cannot be created:";
Utility.getInstance().throwSMException(excp, mess, "sm.operation.error");
} catch (SAXException excp) {
String mess = "Not able to parse xml file:" + fileName;
Utility.getInstance().throwSMException(excp, mess, "sm.operation.error");
} catch (IOException excp) {
String mess = "Not able to parse xml file: IOException" + fileName;
Utility.getInstance().throwSMException(excp, mess, "sm.operation.error");
}
}
return doc;
}
/** @return List of classes */
public List<String> getClasses() {
return Collections.unmodifiableList(classes);
}
/** @return List of lazy objs */
public List<String> getLazyObjects() {
return Collections.unmodifiableList(lazyObjects);
}
/** @return List of eager objs */
public List<String> getEagerObjects() {
return Collections.unmodifiableList(eagerObjects);
}
/**
* get a set of login names of users having given privilege on given object.
*
* @param objectId id
* @param privilege priv
* @return Set of users
* @throws SMException e
*/
public Set<String> getAccesibleUsers(String objectId, String privilege) throws SMException {
Set<String> result = new HashSet<String>();
try {
UserProvisioningManager userProvManager = privilegeUtility.getUserProvisioningManager();
List<Group> list = userProvManager.getAccessibleGroups(objectId, privilege);
if (list != null) {
for (Group group : list) {
Set<User> users = userProvManager.getUsers(String.valueOf(group.getGroupId()));
for (User user : users) {
result.add(user.getLoginName());
}
}
}
} catch (CSException excp) {
String mess = "Not able to get instance of UserProvisioningManager:";
Utility.getInstance().throwSMException(excp, mess, "sm.operation.error");
}
return result;
}
/**
* Creates a ROle object.
*
* @param roleName rolename
* @param privileges set of privileges
* @throws SMException
*/
public void createRole(String roleName, Set<String> privileges) throws SMException {
PrivilegeUtility privilegeUtility = new PrivilegeUtility();
Role role = null;
try {
role = privilegeUtility.getRole(roleName);
} catch (Exception e) {
role = new Role();
role.setName(roleName);
role.setDesc("Dynamically created role");
role.setApplication(
privilegeUtility.getApplication(
SecurityManagerPropertiesLocator.getInstance().getApplicationCtxName()));
Set<Privilege> privilegeList = new HashSet<Privilege>();
try {
for (String privilegeId : privileges) {
Privilege privilege =
privilegeUtility.getUserProvisioningManager().getPrivilegeById(privilegeId);
privilegeList.add(privilege);
}
role.setPrivileges(privilegeList);
UserProvisioningManager userProvisioningManager =
privilegeUtility.getUserProvisioningManager();
userProvisioningManager.createRole(role);
} catch (CSObjectNotFoundException e1) {
Utility.getInstance().throwSMException(e1, e1.getMessage(), "sm.operation.error");
} catch (CSTransactionException e2) {
Utility.getInstance().throwSMException(e2, e2.getMessage(), "sm.operation.error");
}
}
}
/**
* This is a temporary method written for StorageContainer - special case Used for
* StorageContainerBizLogic.isDeAssignable() method.
*
* @param roleId roleid
* @param objectId obj id
* @param privilegeName name of the priv
* @return boolean whether has privilege
* @throws SMException
*/
public boolean hasGroupPrivilege(String roleId, String objectId, String privilegeName)
throws SMException {
boolean hasPriv = true;
PrivilegeUtility utility = new PrivilegeUtility();
String groupId = utility.getGroupIdForRole(roleId);
Set<User> users;
try {
users = utility.getUserProvisioningManager().getUsers(groupId);
for (User user : users) {
if (!getPrivilegeCache(user.getLoginName()).hasPrivilege(objectId, privilegeName)) {
hasPriv = false;
}
}
} catch (CSObjectNotFoundException e) {
Utility.getInstance().throwSMException(e, e.getMessage(), "sm.operation.error");
}
return hasPriv;
}
}
/**
* This Class is used to define method for Specimen label printing.
*
* @author falguni_sachde
*/
public class SpecimenLabelPrinterImpl implements LabelPrinter {
/** Generic logger. */
private final transient Logger logger = Logger.getCommonLogger(SpecimenLabelPrinterImpl.class);
/**
* This method prints label.
*
* @param abstractDomainObject abstract Domain Object
* @param ipAddress IP Address
* @param userObj user Object
* @param printerType printer Type
* @param printerLocation printer Location
* @return true or false status.
* @see edu.wustl.catissuecore.printserviceclient.LabelPrinter#printLabel
* (edu.wustl.common.domain.AbstractDomainObject, java.lang.String,
* gov.nih.nci.security.authorization.domainobjects.User)
*/
public boolean printLabel(
AbstractDomainObject abstractDomainObject,
String ipAddress,
User userObj,
String printerType,
String printerLocation) {
final ArrayList listMap = new ArrayList();
// createObjectMap(abstractDomainObject,listMap);
this.createObjectMap(abstractDomainObject, listMap, printerType, printerLocation, ipAddress);
return callToPrinter(listMap);
}
/**
* This method prints label.
*
* @param abstractDomainObjectList abstract Domain Object list.
* @param ipAddress IP Address
* @param userObj user Object
* @param printerType printer Type
* @param printerLocation printer Location
* @return true or false status.
* @see edu.wustl.catissuecore.print.LabelPrinter#printLabel (java.util.List, java.lang.String,
* gov.nih.nci.security.authorization.domainobjects.User)
*/
public boolean printLabel(
List<AbstractDomainObject> abstractDomainObjectList,
String ipAddress,
User userObj,
String printerType,
String printerLocation) {
// Iterate through all objects in List ,crate map of each object.
final ArrayList listMap = new ArrayList();
this.createObjectMap(
abstractDomainObjectList, listMap, printerType, printerLocation, ipAddress);
return callToPrinter(listMap);
}
/**
* This method will call PrintServiceInputParserInterface for printing.
*
* @param listMap List of objects
* @return boolean
*/
private boolean callToPrinter(final List listMap) {
try {
final PrintServiceInputParserInterface objParser = new PrintServiceInputXMLParser();
return objParser.callPrintService(listMap);
} catch (final Exception exp) {
this.logger.error(exp.getMessage(), exp);
return false;
}
}
/**
* This method creates Object Map.
*
* @param abstractDomainObjectList abstract Domain Object List
* @param listMap list Map
* @param printerType printer Type
* @param printerLocation printer Location
* @param ipAddress IP Address
*/
void createObjectMap(
List<AbstractDomainObject> abstractDomainObjectList,
List listMap,
String printerType,
String printerLocation,
String ipAddress) {
// Bug 11509
Collections.sort(abstractDomainObjectList, new IdComparator());
iterateSpecimenList(abstractDomainObjectList, ipAddress, printerType, printerLocation, listMap);
}
/**
* This method adds Data To Print.
*
* @param specimen Specimen instance.
* @param listMap list Map
* @param printerType printer Type
* @param printerLocation printer Location
* @param ipAddress IP Address
*/
protected void addDataToPrint(
Specimen specimen,
List listMap,
String printerType,
String printerLocation,
String ipAddress) {
final LinkedHashMap dataMap = new LinkedHashMap();
String label = specimen.getLabel();
// bug 13100
// if any property is null the Null pointer exception is thrown while creating
// string data from Document in getStringFromDocument()
if (label == null) {
label = " ";
}
String barcode = specimen.getBarcode();
if (barcode == null) {
barcode = " ";
}
dataMap.put("class", specimen.getClassName());
dataMap.put("id", specimen.getId().toString());
dataMap.put("label", label);
dataMap.put("barcode", barcode);
dataMap.put("printerType", printerType);
dataMap.put("printerLocation", printerLocation);
listMap.add(dataMap);
}
/**
* @param abstractDomainObject Specimen Object
* @param listMap List of Specimen details including all child specimen.
* @param printerType printer Type
* @param printerLocation printer Location
* @param ipAddress IP Address
*/
void createObjectMap(
AbstractDomainObject abstractDomainObject,
List listMap,
String printerType,
String printerLocation,
String ipAddress) {
if (abstractDomainObject instanceof Specimen) {
final Specimen objSpecimen = (Specimen) abstractDomainObject;
final ArrayList specimenList = new ArrayList();
specimenList.add(objSpecimen);
this.getAllSpecimenList(objSpecimen, specimenList);
// Bug 11509
Collections.sort(specimenList, new IdComparator());
for (int cnt = 0; cnt < specimenList.size(); cnt++) {
final Specimen obj = (Specimen) specimenList.get(cnt);
this.addDataToPrint(obj, listMap, printerType, printerLocation, ipAddress);
}
}
}
/**
* @param objSpecimen Specimen Object
* @param specimenList List of Specimen including all child specimen.
*/
void getAllSpecimenList(Specimen objSpecimen, List specimenList) {
final Collection childSpecimen = objSpecimen.getChildSpecimenCollection();
if (childSpecimen != null && !childSpecimen.isEmpty()) {
final Iterator itr = childSpecimen.iterator();
while (itr.hasNext()) {
final Specimen specimen = (Specimen) itr.next();
specimenList.add(specimen);
this.getAllSpecimenList(specimen, specimenList);
}
}
}
/**
* This method prints label.
*
* @param abstractDomainObjectList abstract Domain Object list.
* @param ipAddress IP Address
* @param userObj user Object
* @param printerType printer Type
* @param printerLocation printer Location
* @param printSpecimanlabel Specimen Label
* @return true or false status.
*/
public boolean printLabel(
List<AbstractDomainObject> abstractDomainObjectList,
String ipAddress,
User userObj,
String printerType,
String printerLocation,
String printSpecimanlabel) {
// Iterate through all objects in List ,crate map of each object.
final ArrayList listMap = new ArrayList();
iterateSpecimenList(abstractDomainObjectList, ipAddress, printerType, printerLocation, listMap);
return callToPrinter(listMap);
}
/**
* This method will iterate over specimen list.
*
* @param abstractDomainObjectList Specimen object list
* @param printerType printer Type
* @param printerLocation printer Location
* @param listMap ArrayList
* @param ipAddress ipAddress of system
*/
private void iterateSpecimenList(
List<AbstractDomainObject> abstractDomainObjectList,
String ipAddress,
String printerType,
String printerLocation,
final List listMap) {
for (final AbstractDomainObject abstractDomainObject : abstractDomainObjectList) {
if (abstractDomainObject instanceof Specimen) {
final Specimen obj = (Specimen) abstractDomainObject;
this.addDataToPrint(obj, listMap, printerType, printerLocation, ipAddress);
}
}
}
}
/**
* @author kalpana_thakur This class will handle insert/update of all the hashed values as per the
* database type.
*/
public class HashedDataHandler {
/** Class Logger. */
private static org.apache.log4j.Logger logger = Logger.getLogger(HashedDataHandler.class);
/**
* This method returns the metaData associated to the table specified in tableName.
*
* @param tableName Name of the table whose metaData is requested
* @param columnNames Table columns
* @param jdbcDAO : Database connections to retrieve meta data.
* @return It will return the metaData associated to the table.
* @throws DAOException : DAOException
* @throws SQLException :
*/
protected final ResultSetMetaData getMetaData(
String tableName, List<String> columnNames, JDBCDAO jdbcDAO)
throws DAOException, SQLException {
ResultSetMetaData metaData;
StringBuffer sqlBuff = new StringBuffer(DAOConstants.TAILING_SPACES);
sqlBuff.append("Select").append(DAOConstants.TAILING_SPACES);
for (int i = 0; i < columnNames.size(); i++) {
sqlBuff.append(columnNames.get(i));
if (i != columnNames.size() - 1) {
sqlBuff.append(" ,");
}
}
sqlBuff.append(" from " + tableName + " where 1!=1");
metaData = jdbcDAO.getQueryResultSet(sqlBuff.toString()).getMetaData();
return metaData;
}
/**
* This method will returns the metaData associated to the table specified in tableName and update
* the list columnNames.
*
* @param tableName Name of the table whose metaData is requested
* @param columnNames Table columns
* @param jdbcDAO : Database connections to retrieve meta data.
* @return It will return the metaData associated to the table.
* @throws DAOException : DAOException
*/
protected final ResultSetMetaData getMetaDataAndUpdateColumns(
String tableName, List<String> columnNames, JDBCDAO jdbcDAO) throws DAOException {
ResultSetMetaData metaData;
try {
StringBuffer sqlBuff = new StringBuffer(DAOConstants.TAILING_SPACES);
sqlBuff.append("Select * from ").append(tableName).append(" where 1!=1");
metaData = jdbcDAO.getQueryResultSet(sqlBuff.toString()).getMetaData();
for (int i = 1; i <= metaData.getColumnCount(); i++) {
columnNames.add(metaData.getColumnName(i));
}
} catch (SQLException sqlExp) {
logger.fatal(sqlExp.getMessage(), sqlExp);
ErrorKey errorKey = ErrorKey.getErrorKey("db.operation.error");
throw new DAOException(
errorKey, sqlExp, "HashedDataHandler.java :" + DAOConstants.RS_METADATA_ERROR);
}
return metaData;
}
/**
* This method generates the Insert query.
*
* @param tableName : Name of the table given to insert query
* @param columnNamesList : List of columns of the table.
* @return query String.
*/
protected String createInsertQuery(String tableName, List<String> columnNamesList) {
StringBuffer query = new StringBuffer("INSERT INTO " + tableName + "(");
StringBuffer colValues = new StringBuffer();
Iterator<String> columnIterator = columnNamesList.iterator();
while (columnIterator.hasNext()) {
query.append(columnIterator.next());
colValues.append(DAOConstants.INDEX_VALUE_OPERATOR).append(DAOConstants.TAILING_SPACES);
if (columnIterator.hasNext()) {
query.append(DAOConstants.SPLIT_OPERATOR).append(DAOConstants.TAILING_SPACES);
colValues.append(DAOConstants.SPLIT_OPERATOR);
} else {
query.append(") values(");
colValues.append(") ");
query.append(colValues.toString());
}
}
return query.toString();
}
/**
* @param columnValues :
* @param metaData :
* @param stmt :
* @throws SQLException :
* @throws DAOException :
*/
private void setStmtIndexValue(
List<Object> columnValues, ResultSetMetaData metaData, PreparedStatement stmt)
throws SQLException, DAOException {
for (int i = 0; i < columnValues.size(); i++) {
Object obj = columnValues.get(i);
int index = i;
index++;
if (isDateColumn(metaData, index)) {
setDateColumns(stmt, index, obj);
continue;
}
if (isTinyIntColumn(metaData, index)) {
setTinyIntColumns(stmt, index, obj);
continue;
}
/*if(isTimeStampColumn(stmt,i,obj))
{
continue;
}*/
if (isNumberColumn(metaData, index)) {
setNumberColumns(stmt, index, obj);
continue;
}
stmt.setObject(index, obj);
}
}
/**
* @param metaData :
* @param index :
* @return true if column type date.
* @throws SQLException :Exception
*/
private boolean isDateColumn(ResultSetMetaData metaData, int index) throws SQLException {
boolean isDateType = false;
String type = metaData.getColumnTypeName(index);
if ("DATE".equals(type)) {
isDateType = true;
}
return isDateType;
}
/**
* @param metaData :
* @param index :
* @return true if column type TinyInt.
* @throws SQLException :Exception
*/
private boolean isTinyIntColumn(ResultSetMetaData metaData, int index) throws SQLException {
boolean isTinyIntType = false;
String type = metaData.getColumnTypeName(index);
if ("TINYINT".equals(type)) {
isTinyIntType = true;
}
return isTinyIntType;
}
/**
* @param metaData :
* @param index :
* @return true if column type is Number.
* @throws SQLException :Exception
*/
private boolean isNumberColumn(ResultSetMetaData metaData, int index) throws SQLException {
boolean isNumberType = false;
String type = metaData.getColumnTypeName(index);
if ("NUMBER".equals(type)) {
isNumberType = true;
}
return isNumberType;
}
/**
* This method called to set Number value to PreparedStatement.
*
* @param stmt : TODO
* @param index : TODO
* @param obj : Object
* @throws SQLException : SQLException
*/
protected void setNumberColumns(PreparedStatement stmt, int index, Object obj)
throws SQLException {
if (obj != null && obj.toString().equals("##")) {
stmt.setObject(index, Integer.valueOf(-1));
} else {
stmt.setObject(index, obj);
}
}
/**
* This method called to set TimeStamp value to PreparedStatement.
*
* @param stmt :PreparedStatement
* @param index :
* @param obj :
* @return return true if column type is timeStamp.
* @throws SQLException SQLException
*/
protected boolean isTimeStampColumn(PreparedStatement stmt, int index, Object obj)
throws SQLException {
boolean isTimeStampColumn = false;
Timestamp date = isColumnValueDate(obj);
if (date != null) {
stmt.setObject(index, date);
isTimeStampColumn = true;
}
return isTimeStampColumn;
}
/**
* This method is called to set TinyInt value to prepared statement.
*
* @param stmt : TODO
* @param index :
* @param obj :
* @throws SQLException : SQLException
*/
private void setTinyIntColumns(PreparedStatement stmt, int index, Object obj)
throws SQLException {
if (obj != null && (Boolean.parseBoolean(obj.toString()) || obj.equals("1"))) {
stmt.setObject(index, 1);
} else {
stmt.setObject(index, 0);
}
}
/**
* This method used to set Date values. to prepared statement
*
* @param stmt :TODO
* @param index :
* @param obj :
* @throws SQLException : SQLException
* @throws DAOException : DAOException
*/
protected void setDateColumns(PreparedStatement stmt, int index, Object obj)
throws SQLException, DAOException {
if (obj != null && obj.toString().equals("##")) {
java.util.Date date = null;
try {
date = Utility.parseDate("1-1-9999", "mm-dd-yyyy");
} catch (ParseException exp) {
// TODO have to replace this by parse key
ErrorKey errorKey = ErrorKey.getErrorKey("db.operation.error");
throw new DAOException(errorKey, exp, "HashedDataHandler.java :");
}
Date sqlDate = new Date(date.getTime());
stmt.setDate(index, sqlDate);
}
}
/**
* This method checks the TimeStamp value.
*
* @param obj :
* @return It returns the TimeStamp value
*/
private Timestamp isColumnValueDate(Object obj) {
Timestamp timestamp = null;
try {
DateFormat formatter = new SimpleDateFormat("MM-dd-yyyy", Locale.getDefault());
formatter.setLenient(false);
java.util.Date date;
date = formatter.parse(obj.toString());
/*
* Recheck if some issues occurs.
*/
Timestamp timestampInner = new Timestamp(date.getTime());
if (obj != null && !DAOConstants.TAILING_SPACES.equals(obj.toString())) {
timestamp = timestampInner;
}
} catch (ParseException parseExp) {
logger.error(parseExp.getMessage(), parseExp);
}
return timestamp;
}
/**
* This method will be called to insert hashed data values.
*
* @param tableName :Name of the table
* @param columnValues :List of column values
* @param columnNames :List of column names.
* @param jdbcDAO : Database jdbcDAO
* @throws DAOException :DAOException
* @throws SQLException : SQLException
*/
public void insertHashedValues(
String tableName, List<Object> columnValues, List<String> columnNames, JDBCDAO jdbcDAO)
throws DAOException, SQLException {
List<String> columnNamesList = new ArrayList<String>();
ResultSetMetaData metaData;
PreparedStatement stmt = null;
try {
if (columnNames != null && !columnNames.isEmpty()) {
metaData = getMetaData(tableName, columnNames, jdbcDAO);
columnNamesList = columnNames;
} else {
metaData = getMetaDataAndUpdateColumns(tableName, columnNamesList, jdbcDAO);
}
String insertQuery = createInsertQuery(tableName, columnNamesList);
stmt = jdbcDAO.getPreparedStatement(insertQuery);
setStmtIndexValue(columnValues, metaData, stmt);
stmt.executeUpdate();
} catch (SQLException sqlExp) {
logger.error(sqlExp.getMessage(), sqlExp);
ErrorKey errorKey = ErrorKey.getErrorKey("db.operation.error");
throw new DAOException(
errorKey, sqlExp, "HashedDataHandler.java :" + DAOConstants.INSERT_OBJ_ERROR);
}
}
}