/**
* Partitions the data represented by dims into groups of records where records are whole
* subarrays with size 1 on the zero-th dimension. This may not work for all formats, revisit this
* later TODO
*
* @param dims List of Dimension objects representing the dimensions of the input data that we are
* generating partitions for
* @param varName Name of the variable we are generating partitions for
* @param fileName name of the file that contains the variable we are generating partitions for
* @param partMode the partitioning mode being used to generate the partitions
* @param startOffset the logical offset in the input data to start creating partitions at
* @param conf Configuration object for this execution the given MR program
* @return an array of ArraySpec objects that represent the partitions this function generated
*/
protected ArraySpec[] recordBasedPartition(
int[] dims,
String varName,
String fileName,
PartMode partMode,
int[] startOffset,
Configuration conf)
throws IOException {
int ndims = dims.length;
int recDimLen = dims[0];
int[] recordShape = new int[ndims];
int[] recordCorner = new int[ndims];
ArrayList<ArraySpec> records = new ArrayList<ArraySpec>(recDimLen);
for (int i = 0; i < ndims; i++) {
recordShape[i] = dims[i];
recordCorner[i] = 0;
}
recordShape[0] = 1;
if (Utils.queryDependantEnabled(conf)) {
LOG.info("Query Dependant enabled");
recordShape[0] = Utils.getExtractionShape(conf, recordShape.length)[0];
} else {
LOG.info("Query Dependant NOT enabled");
}
ArraySpec tempSpec = null;
for (int i = 0; i < recDimLen; i += recordShape[0]) {
recordCorner[0] = i;
// FIXME: this is clunky
try {
// if this is optC and the record is not valid, do not add it,
if (Utils.noScanEnabled(conf)) {
if (Utils.isValid(recordCorner, conf)) {
tempSpec = new ArraySpec(recordCorner, recordShape, varName, fileName);
tempSpec.setLogicalStartOffset(startOffset);
records.add(tempSpec);
// records.add(new ArraySpec(recordCorner, recordShape, varName, fileName));
}
} else { // else wise do add it
tempSpec = new ArraySpec(recordCorner, recordShape, varName, fileName);
tempSpec.setLogicalStartOffset(startOffset);
records.add(tempSpec);
// records.add(new ArraySpec(recordCorner, recordShape, varName, fileName));
}
} catch (Exception e) {
throw new IOException(e);
}
}
ArraySpec[] returnArray = new ArraySpec[records.size()];
returnArray = records.toArray(returnArray);
return returnArray;
}
/**
* The partitioning scheme creates partitions distributes the data to be read (approximately)
* evenly over all the blocks in the file. This is a very naive approach and should not be used
* other than as a point of refernece.
*
* @param dims represent the logical input space
* @param varName name of the variable that we're creating partitions for
* @param blockSize the size, in bytes, of the blocks used to store the file that contains the
* data being partitioned
* @param numBlocks the number of blocks to use for generating the per-partition size
* @param fileLen the length of the file, in bytes
* @param dataTypeSize the size, in bytes, of a single cell for the given data type stored in the
* file for which partitions are being generated
* @param fileName name of the file that partitions are being generated for
* @param startOffset the logical position in the file to begin generating partitions from
* @param conf Configuration object for this current MR program
* @return an array of ArraySpecs that is the same length as dims, where each ArraySpec
* corresponds to a partition
*/
protected ArraySpec[] proportionalPartition(
int[] dims,
String varName,
long blockSize,
long numBlocks,
long fileLen,
int dataTypeSize,
String fileName,
int[] startOffset,
Configuration conf)
throws IOException {
int ndims = dims.length;
ArrayList<ArraySpec> records = new ArrayList<ArraySpec>();
// this next bit is fairly hard-coded and specific to our tests.
// it represents a naive split that a human might come up with
// sort out the step size
int[] stepShape = calcStepShape(dims, blockSize, numBlocks, fileLen, dataTypeSize, conf);
int[] tempCorner = new int[ndims];
int[] tempStep = new int[ndims];
// initialize the temporary step shape to be the first step
for (int i = 0; i < ndims; i++) {
tempStep[i] = stepShape[i];
tempCorner[i] = 0;
}
LOG.info("Calculated stepshape: " + Utils.arrayToString(stepShape));
ArraySpec tempSpec = new ArraySpec();
int stepSize = tempStep[0];
// create the actual splits
while (tempCorner[0] < dims[0]) {
try {
if (Utils.noScanEnabled(conf)) {
if (Utils.isValid(tempCorner, conf)) {
tempSpec = new ArraySpec(tempCorner, tempStep, varName, fileName);
tempSpec.setLogicalStartOffset(startOffset);
records.add(tempSpec);
}
} else {
tempSpec = new ArraySpec(tempCorner, tempStep, varName, fileName);
tempSpec.setLogicalStartOffset(startOffset);
records.add(tempSpec);
}
} catch (Exception e) {
throw new IOException(e);
}
// update the corner
tempCorner[0] += stepSize;
// use MIN here to make sure we don't over run the constraining space
stepSize = Math.min(tempStep[0], dims[0] - tempCorner[0]);
// update the shape of the next write appropriately
tempStep[0] = stepSize;
}
ArraySpec[] returnArray = new ArraySpec[records.size()];
returnArray = records.toArray(returnArray);
return returnArray;
}