@Test
public void testCheckPosition() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
Assert.assertFalse(container.isPositionFree(childSpc.getPosition()));
Assert.assertTrue(container.isPositionFree(new RowColPos(2, 3)));
}
@Test
public void testGetSpecimensInSiteWithPositionLabel() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper sampleType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(sampleType);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
1);
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
1,
0);
childSpc =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
2);
childSpc.setInventoryId(Utils.getRandomString(5));
childSpc.persist();
List<SpecimenWrapper> specimens =
SpecimenWrapper.getSpecimensInSiteWithPositionLabel(
appService, site, childSpc.getPositionString(true, false));
Assert.assertEquals(1, specimens.size());
Assert.assertEquals(specimens.get(0), childSpc);
}
@Test
public void testGetSpecimensNonActive() throws Exception {
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper sampleType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(sampleType);
ActivityStatus activityStatusNonActive = ActivityStatus.CLOSED;
List<SpecimenWrapper> activeSpecimens = new ArrayList<SpecimenWrapper>();
List<SpecimenWrapper> nonActiveSpecimens = new ArrayList<SpecimenWrapper>();
activeSpecimens.add(childSpc);
for (int i = 1, n = container.getColCapacity(); i < n; ++i) {
activeSpecimens.add(
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
0,
i));
SpecimenWrapper a =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
1,
i);
a.setActivityStatus(activityStatusNonActive);
a.persist();
nonActiveSpecimens.add(a);
}
List<SpecimenWrapper> specimens =
SpecimenWrapper.getSpecimensNonActiveInCenter(appService, site);
Assert.assertEquals(nonActiveSpecimens.size(), specimens.size());
Assert.assertTrue(specimens.containsAll(nonActiveSpecimens));
Assert.assertFalse(specimens.containsAll(activeSpecimens));
}
@Test
public void testGetSetParent() throws Exception {
Assert.assertTrue(childSpc.hasParent());
ContainerWrapper oldParent = childSpc.getParentContainer();
ContainerTypeWrapper type =
ContainerTypeHelper.addContainerType(site, "newCtType", "ctNew", 1, 4, 5, true);
type.addToSpecimenTypeCollection(Arrays.asList(childSpc.getSpecimenType()));
type.persist();
ContainerWrapper parent =
ContainerHelper.addContainer("newcontainerParent", "ccNew", site, type);
childSpc.setParent(parent, childSpc.getPosition());
childSpc.persist();
// check to make sure gone from old parent
oldParent.reload();
Assert.assertTrue(oldParent.getSpecimens().size() == 0);
// check to make sure added to new parent
parent.reload();
Assert.assertTrue(childSpc.getParentContainer() != null);
Collection<SpecimenWrapper> sampleWrappers = parent.getSpecimens().values();
boolean found = false;
for (SpecimenWrapper sampleWrapper : sampleWrappers) {
if (sampleWrapper.getId().equals(childSpc.getId())) found = true;
}
Assert.assertTrue(found);
// test for no parent
SpecimenWrapper specimen2 = new SpecimenWrapper(appService);
Assert.assertFalse(specimen2.hasParent());
}
@Test
public void testGetPositionString() throws Exception {
childSpc.setParentFromPositionString("A1", childSpc.getParentContainer());
Assert.assertTrue(childSpc.getPositionString(false, false).equals("A1"));
String parentLabel = childSpc.getParentContainer().getLabel();
Assert.assertTrue(childSpc.getPositionString(true, false).equals(parentLabel + "A1"));
// getPositionString with no parameters is equivalent to
// getPositionString(true, true)
Assert.assertTrue(
childSpc
.getPositionString()
.equals(parentLabel + "A1 (" + topContainer.getContainerType().getNameShort() + ")"));
childSpc.setParent(null, null);
Assert.assertNull(childSpc.getPositionString(false, false));
}
/*
* childSpc created in setUp()
*/
@Test
public void testGetDispatches() throws Exception {
String name = "testGetDispatches" + r.nextInt();
SiteWrapper destSite = SiteHelper.addSite(name);
ShippingMethodWrapper method = ShippingMethodWrapper.getShippingMethods(appService).get(0);
DispatchWrapper d = DispatchHelper.addDispatch(site, destSite, method);
d.addSpecimens(Arrays.asList(childSpc), DispatchSpecimenState.NONE);
d.persist();
childSpc.reload();
List<DispatchWrapper> specimenDispatches = childSpc.getDispatches();
Assert.assertEquals(1, specimenDispatches.size());
Assert.assertTrue(specimenDispatches.contains(d));
Assert.assertTrue(d.isInCreationState());
// site send specimens
d.setState(DispatchState.IN_TRANSIT);
d.persist();
Assert.assertTrue(d.isInTransitState());
// dest site receive specimen
d.setState(DispatchState.RECEIVED);
d.receiveSpecimens(Arrays.asList(childSpc));
d.persist();
Assert.assertTrue(d.isInReceivedState());
// make sure spc now belongs to destSite
destSite.reload();
childSpc.reload();
Assert.assertEquals(destSite, childSpc.getCurrentCenter());
// dispatch specimen to second site
SiteWrapper destSite2 = SiteHelper.addSite(name + "_2");
DispatchWrapper d2 = DispatchHelper.addDispatch(destSite, destSite2, method);
d2.addSpecimens(Arrays.asList(childSpc), DispatchSpecimenState.NONE);
parentSpc.reload();
// assign a position to this specimen
ContainerTypeWrapper topType =
ContainerTypeHelper.addContainerType(destSite, "ct11", "ct11", 1, 5, 6, true);
ContainerWrapper topCont = ContainerHelper.addContainer("11", "11", destSite, topType);
ContainerTypeWrapper childType =
ContainerTypeHelper.addContainerType(destSite, "ct22", "ct22", 2, 4, 7, false);
topType.addToChildContainerTypeCollection(Arrays.asList(childType));
topType.persist();
ContainerWrapper cont =
ContainerHelper.addContainer("22", "22", topCont, destSite, childType, 4, 5);
childType.addToSpecimenTypeCollection(Arrays.asList(childSpc.getSpecimenType()));
childType.persist();
cont.reload();
cont.addSpecimen(2, 3, childSpc);
parentSpc.persist();
// add to new dispatch
d2.addSpecimens(Arrays.asList(childSpc), DispatchSpecimenState.NONE);
d2.persist();
// make sure spc still belongs to destSite
destSite2.reload();
childSpc.reload();
Assert.assertEquals(destSite2, childSpc.getCurrentCenter());
childSpc.reload();
specimenDispatches = childSpc.getDispatches();
Assert.assertEquals(2, specimenDispatches.size());
Assert.assertTrue(specimenDispatches.contains(d));
Assert.assertTrue(specimenDispatches.contains(d2));
}
@Test
public void testDebugRandomMethods() throws Exception {
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ContainerWrapper container = childSpc.getParentContainer();
ContainerTypeWrapper containerType = container.getContainerType();
SpecimenTypeWrapper spcType = containerType.getSpecimenTypeCollection(false).get(0);
Assert.assertNotNull(spcType);
System.out.println(parentSpc.getProcessingEvent());
System.out.println(childSpc.getProcessingEvent());
ProcessingEventWrapper pevent =
ProcessingEventHelper.addProcessingEvent(
childSpc.getCurrentCenter(), Utils.getRandomDate());
// add aliquoted specimen
SpecimenWrapper specimen =
SpecimenHelper.newSpecimen(
parentSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
3);
specimen.setInventoryId(Utils.getRandomString(5));
specimen.persist();
pevent.addToSpecimenCollection(Arrays.asList(parentSpc));
pevent.persist();
SpecimenWrapper s2 =
SpecimenHelper.newSpecimen(
childSpc,
childSpc.getSpecimenType(),
ActivityStatus.ACTIVE,
childSpc.getProcessingEvent(),
childSpc.getParentContainer(),
2,
4);
s2.setParent(null, null);
s2.setParentSpecimen(null);
s2.persist();
try {
// should find at least one specimen with a parent that is inside a
// processing event
Assert.assertTrue(
DebugUtil.getRandomLinkedAliquotedSpecimens(appService, site.getId()).size() > 0);
Assert.assertTrue(DebugUtil.getRandomAssignedSpecimens(appService, site.getId()).size() > 0);
List<SpecimenWrapper> randomNonAssociatedNonDispatchedSpecimens =
DebugUtil.getRandomNonAssignedNonDispatchedSpecimens(appService, site.getId(), 10);
Assert.assertTrue(randomNonAssociatedNonDispatchedSpecimens.size() > 0);
} catch (Exception e) {
Assert.fail(e.getCause().getMessage());
}
try {
s2.delete();
} catch (Exception e) {
e.printStackTrace();
}
}