public void clearAllElements() {
// this deletion code was copied from an old version of LWComponent deletion code
// todo: probably should sync this up with whatever the menu action does.
Iterator li = getAllDescendents().iterator();
while (li.hasNext()) {
LWComponent c = (LWComponent) li.next();
LWContainer parent = c.getParent();
if (parent == null) {
// System.out.println("DELETE: " + c + " skipping: null parent (already deleted)");
} else if (c.isDeleted()) {
// System.out.println("DELETE: " + c + " skipping (already deleted)");
} else if (parent.isDeleted()) { // after prior check, this case should be impossible now
// System.out.println("DELETE: " + c + " skipping (parent already deleted)"); // parent will
// call deleteChildPermanently
} else if (parent.isSelected()) { // if parent selected, it will delete it's children
// System.out.println("DELETE: " + c + " skipping - parent selected & will be deleting");
} else {
parent.deleteChildPermanently(c);
}
}
}
public void addMergeNodesForMap(LWMap map, WeightAggregate weightAggregate, List<Style> styles) {
Iterator<LWComponent> children =
map.getAllDescendents(LWComponent.ChildKind.PROPER).iterator(); // map.getNodeIterator();
while (children.hasNext()) {
LWComponent component = children.next();
if (component instanceof LWPortal) continue;
if (component instanceof LWNode || component instanceof LWImage) {
boolean repeat = false;
if (nodeAlreadyPresent(component)) {
repeat = true;
}
LWComponent node = component.duplicate();
edu.tufts.vue.metadata.VueMetadataElement vme =
new edu.tufts.vue.metadata.VueMetadataElement();
vme.setType(edu.tufts.vue.metadata.VueMetadataElement.OTHER);
String sourceLabel = node.getLabel();
if (sourceLabel == null) sourceLabel = "";
String sourceMap = component.getMap().getLabel();
if (sourceMap == null) sourceMap = "";
vme.setObject("source: " + sourceMap + "," + sourceLabel);
node.getMetadataList().getMetadata().add(vme);
if (!repeat) {
if (!excludeNodesFromBaseMap || !nodePresentOnBaseMap(node)) {
add(node);
}
}
}
}
}
public boolean nodeAlreadyPresent(LWComponent node) {
if (DEBUG_LOCAL) {
System.out.println("nodeAlreadyPresent -- getParent() " + node.getParent());
}
// also need to check if parent *will* be visible
// if(! (node.getParent() instanceof LWMap ) )
if (!node.atTopLevel()) return true;
if (node == null) {
return false;
}
// if(node.getParent() instanceof LWNode && (LWNode.isImageNode((LWNode)(node.getParent()))) )
// return true;
// Iterator<LWComponent> i = this.getAllDescendents(ChildKind.PROPER).iterator();
// Iterator<LWComponent> i = this. getChildList().iterator();
for (LWComponent c : getAllDescendents(ChildKind.PROPER)) {
if (Util.getMergeProperty(node) != null && Util.getMergeProperty(c) != null) {
if (Util.getMergeProperty(node).equals(Util.getMergeProperty(c))) {
if (DEBUG_LOCAL) {
System.out.println(
"LWMergeMap - returning true in nodeAlreadyPresent - for (node,c) ("
+ Util.getMergeProperty(node)
+ ","
+ Util.getMergeProperty(c)
+ ")");
}
// TODO: not sure why this code is here and what it is doing. should be refactored.
String sourceLabel = node.getLabel();
if (sourceLabel == null) sourceLabel = "";
edu.tufts.vue.metadata.VueMetadataElement vme =
new edu.tufts.vue.metadata.VueMetadataElement();
vme.setType(edu.tufts.vue.metadata.VueMetadataElement.OTHER);
vme.setObject("source: " + node.getMap().getLabel() + "," + sourceLabel);
c.getMetadataList().getMetadata().add(vme);
return true;
}
}
}
return false;
}
public void fillAsWeightMerge() {
ConnectivityMatrixList<ConnectivityMatrix> cms =
new ConnectivityMatrixList<ConnectivityMatrix>();
Iterator<LWMap> i = getMapList().iterator();
Iterator<Boolean> ci = null;
if (getActiveFileList() != null) ci = getActiveFileList().iterator();
while (i.hasNext()) {
LWMap m = i.next();
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap, computing matrix array next map is: " + m.getLabel());
}
Boolean b = Boolean.TRUE;
if (ci != null && ci.hasNext()) {
b = ci.next();
}
if (b.booleanValue()) // || (m==getBaseMap()))
{
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap, computing matrix array actually adding: " + m.getLabel());
}
cms.add(new ConnectivityMatrix(m));
} else {
if (DEBUG_LOCAL) {
System.out.println(
"LWMergeMap, computing matrix array not adding due to check box or base map (already added):"
+ " (label, m == getBaseMap()) ("
+ m.getLabel()
+ ","
+ (m == getBaseMap())
+ ")");
}
}
}
ArrayList<Style> nodeStyles = new ArrayList<Style>();
ArrayList<Style> linkStyles = new ArrayList<Style>();
for (int si = 0; si < 5; si++) {
nodeStyles.add(StyleMap.getStyle("node.w" + (si + 1)));
}
for (int lsi = 0; lsi < 5; lsi++) {
linkStyles.add(StyleMap.getStyle("link.w" + (lsi + 1)));
}
WeightAggregate weightAggregate = new WeightAggregate(cms);
if (!excludeNodesFromBaseMap && baseMapIsActive()) {
addMergeNodesForMap(getBaseMap(), weightAggregate, nodeStyles);
}
if (!getFilterOnBaseMap()) {
Iterator<LWMap> maps = getMapList().iterator();
ci = null;
if (getActiveFileList() != null) ci = getActiveFileList().iterator();
while (maps.hasNext()) {
LWMap m = maps.next();
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap: next map - " + m.getLabel());
}
Boolean b = Boolean.TRUE;
if (ci != null && ci.hasNext()) {
b = ci.next();
}
if (m != baseMap && b.booleanValue()) {
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap: actually adding - " + m.getLabel());
}
addMergeNodesForMap(m, weightAggregate, nodeStyles);
} else {
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap: not adding - " + m.getLabel());
}
}
}
}
// todo: use applyCSS(style) -- need to plug in formatting panel
Iterator children = getAllDescendents(LWComponent.ChildKind.PROPER).iterator();
while (children.hasNext()) {
LWComponent comp = (LWComponent) children.next();
if (DEBUG_LOCAL) {
System.out.println("LWMergeMap, computing colors, next component - " + comp.getLabel());
}
if (comp instanceof LWNode) {
LWNode node = (LWNode) comp;
double score =
100
* weightAggregate.getNodeCount(Util.getMergeProperty(node))
/ weightAggregate.getCount();
if (score > 100) {
score = 100;
}
if (score < 0) {
score = 0;
}
Style currStyle = nodeStyles.get(getNodeInterval(score) - 1);
// todo: applyCss here instead.
node.setFillColor(Style.hexToColor(currStyle.getAttribute("background")));
java.awt.Color strokeColor = null;
if (currStyle.getAttribute("font-color") != null) {
strokeColor = Style.hexToColor(currStyle.getAttribute("font-color"));
}
if (strokeColor != null) {
node.setTextColor(strokeColor);
}
}
}
// compute and create links in Merge Map
Iterator<LWComponent> children1 = getAllDescendents(LWComponent.ChildKind.PROPER).iterator();
while (children1.hasNext()) {
LWComponent comp1 = children1.next();
// if(comp1 instanceof LWImage)
// continue;
// LWNode node1 = (LWNode)comp1;
LWComponent node1 = comp1;
Iterator<LWComponent> children2 =
getAllDescendents(LWComponent.ChildKind.PROPER).iterator(); // getNodeIterator();
LWComponent node2 = null;
while (children2.hasNext()) {
/*LWComponent*/ node2 = /*(LWNode)*/ children2.next();
if (!((node2 instanceof LWNode) || (node2 instanceof LWImage))) {
continue;
}
if (node2 != node1) {
int c =
weightAggregate.getConnection(
Util.getMergeProperty(node1), Util.getMergeProperty(node2));
int c2 =
weightAggregate.getConnection(
Util.getMergeProperty(node2), Util.getMergeProperty(node1));
if (c > 0) {
double score = 100 * c / weightAggregate.getCount();
// are either of these ever happenning? If so, why?
if (score > 100) {
score = 100;
}
if (score < 0) {
score = 0;
}
Style currLinkStyle = linkStyles.get(getLinkInterval(score) - 1);
LWLink link = new LWLink(node1, node2);
if (c2 > 0 && !getFilterOnBaseMap()) {
link.setArrowState(LWLink.ARROW_BOTH);
weightAggregate.setConnection(
Util.getMergeProperty(node2), Util.getMergeProperty(node1), 0);
}
// todo: applyCSS here
link.setStrokeColor(Style.hexToColor(currLinkStyle.getAttribute("background")));
addLink(link);
cms.addLinkSourceMapMetadata(
Util.getMergeProperty(node1), Util.getMergeProperty(node2), link);
// edu.tufts.vue.metadata.VueMetadataElement vme = new
// edu.tufts.vue.metadata.VueMetadataElement();
// vme.setType(edu.tufts.vue.metadata.VueMetadataElement.OTHER);
// vme.setObject("source: " + comp.getMap().getLabel() + "," + sourceLabel);
// link.getMetadataList().getMetadata().add(vme);
}
}
}
}
}
public void addMergeNodesFromSourceMap(
LWMap map, VoteAggregate voteAggregate, HashMap<String, LWNode> nodes) {
Iterator<LWComponent> children =
map.getAllDescendents(LWComponent.ChildKind.PROPER).iterator(); // map.getNodeIterator();
while (children.hasNext()) {
// LWNode comp = (LWNode)children.next();
LWComponent comp = children.next();
if (comp instanceof LWPortal) continue;
boolean repeat = false;
if (nodeAlreadyPresent(comp)) {
repeat = true;
/*if(RECORD_SOURCE_NODES)
{
LWNode node = nodes.get(Util.getMergeProperty(comp));
if(node.getNotes() !=null)
{
node.setNotes(node.getNotes()+"\n" + map.getLabel());
}
else
{
node.setNotes(map.getLabel());
}
}*/
}
if (voteAggregate.isNodeVoteAboveThreshold(Util.getMergeProperty(comp))) {
// LWNode node = (LWNode)comp.duplicate();
LWComponent node = comp.duplicate();
String sourceLabel = node.getLabel();
if (sourceLabel == null) sourceLabel = "";
edu.tufts.vue.metadata.VueMetadataElement vme =
new edu.tufts.vue.metadata.VueMetadataElement();
vme.setType(edu.tufts.vue.metadata.VueMetadataElement.OTHER);
// todo: looks like this may be needed in future -- may be an issue
// of map list in merge maps panel -- or otherwise might require
// more generic approach (certainly a seperate method either here or in
// merge maps panel or in VueMetadataElement is in order)
/*String mapLabel = comp.getMap().getLabel();
if(mapLabel != null)
{
if(mapLabel.contains(".vue"))
{
mapLabel = mapLabel.substring(0,mapLabel.indexOf(".vue"));
}
}
else
{
mapLabel = "";
}*/
vme.setObject("source: " + comp.getMap().getLabel() + "," + sourceLabel);
node.getMetadataList().getMetadata().add(vme);
if (!repeat) {
/*if(RECORD_SOURCE_NODES)
{
if(node.getNotes() !=null)
{
node.setNotes(node.getNotes()+"\n" + map.getLabel());
}
else
{
node.setNotes(map.getLabel());
}
nodes.put(Util.getMergeProperty(comp),node);
}*/
// addNode(node);
if (!excludeNodesFromBaseMap || !nodePresentOnBaseMap(node)) {
add(node);
}
}
}
}
}