/**
* Executes the algorithm, producing (at least) a result workbench. Must be implemented in the
* extending class.
*/
public void execute() {
DataModel source = getDataModel();
if (!(source instanceof DataSet)) {
throw new IllegalArgumentException("Expecting a rectangular data set.");
}
DataSet data = (DataSet) source;
if (!data.isContinuous()) {
throw new IllegalArgumentException("Expecting a continuous data set.");
}
// Lingam_old lingam = new Lingam_old();
// lingam.setPruningDone(true);
// lingam.setAlpha(getParams().getIndTestParams().getAlpha());
// GraphWithParameters result = lingam.lingam(data);
// Graph graph = result.getGraph();
Lingam lingam = new Lingam();
LingamParams params = (LingamParams) getParams();
lingam.setPruneFactor(params.getPruneFactor());
Graph graph = lingam.search(data);
setResultGraph(graph);
if (getSourceGraph() != null) {
GraphUtils.arrangeBySourceGraph(graph, getSourceGraph());
} else {
GraphUtils.circleLayout(graph, 200, 200, 150);
}
}
/**
* Executes the algorithm, producing (at least) a result workbench. Must be implemented in the
* extending class.
*/
public void execute() {
DataModel source = getDataModel();
if (!(source instanceof DataSet)) {
throw new IllegalArgumentException("Expecting a rectangular data set.");
}
DataSet data = (DataSet) source;
if (!data.isContinuous()) {
throw new IllegalArgumentException("Expecting a continuous data set.");
}
Lingam lingam = new Lingam();
lingam.setAlpha(getParams().getIndTestParams().getAlpha());
lingam.setPruningDone(true);
lingam.setAlpha(getParams().getIndTestParams().getAlpha());
GraphWithParameters result = lingam.lingam(data);
setResultGraph(result.getGraph());
GraphUtils.arrangeBySourceGraph(getResultGraph(), getSourceGraph());
}