/**
* Constructs a wrapper for the given DataWrapper. The DatWrapper must contain a DataSet that is
* either a DataSet or a DataSet or a DataList containing either a DataSet or a DataSet as its
* selected model.
*
* @param knowledgeBoxModel
*/
public AbstractAlgorithmRunner(
DataWrapper dataWrapper,
Parameters params,
KnowledgeBoxModel knowledgeBoxModel,
IndependenceFactsModel facts) {
if (dataWrapper == null) {
throw new NullPointerException();
}
if (params == null) {
throw new NullPointerException();
}
this.params = params;
this.sourceGraph = dataWrapper.getSourceGraph();
DataModel dataSource = getSelectedDataModel(dataWrapper);
this.dataWrapper = dataWrapper;
// temporary workaround to get the knowledge box to coexist with the dataWrapper's knowledge
if (knowledgeBoxModel == null) {
getParams().set("knowledge", dataWrapper.getKnowledge());
} else {
getParams().set("knowledge", knowledgeBoxModel.getKnowledge());
}
getParams().set("independenceFacts", facts.getFacts());
List names = dataSource.getVariableNames();
transferVarNamesToParams(names);
}
public AbstractAlgorithmRunner(
IndependenceFactsModel model, Parameters params, KnowledgeBoxModel knowledgeBoxModel) {
if (model == null) {
throw new NullPointerException();
}
if (params == null) {
throw new NullPointerException();
}
this.params = params;
DataModel dataSource = model.getFacts();
if (knowledgeBoxModel != null) {
getParams().set("knowledge", knowledgeBoxModel.getKnowledge());
}
List names = dataSource.getVariableNames();
transferVarNamesToParams(names);
this.dataModel = dataSource;
}
public AbstractAlgorithmRunner(DataWrapper dataWrapper, Parameters params) {
if (dataWrapper == null) {
throw new NullPointerException();
}
if (params == null) {
throw new NullPointerException();
}
this.params = params;
this.sourceGraph = dataWrapper.getSourceGraph();
DataModel dataSource = getSelectedDataModel(dataWrapper);
// if (dataSource instanceof ColtDataSet) {
// dataSource = new ColtDataSet((ColtDataSet) dataSource);
// }
this.dataWrapper = dataWrapper;
List names = dataSource.getVariableNames();
transferVarNamesToParams(names);
}
public void setup() {
this.varNames = params.getVarNames();
for (Object parentModel : parentModels) {
if (parentModel instanceof DataWrapper) {
DataWrapper wrapper = (DataWrapper) parentModel;
DataModel dataModel = wrapper.getSelectedDataModel();
new IndTestChooser().adjustIndTestParams(dataModel, params);
break;
} else if (parentModel instanceof GraphWrapper) {
GraphWrapper wrapper = (GraphWrapper) parentModel;
new IndTestChooser().adjustIndTestParams(wrapper.getGraph(), params);
break;
} else if (parentModel instanceof DagWrapper) {
DagWrapper wrapper = (DagWrapper) parentModel;
new IndTestChooser().adjustIndTestParams(wrapper.getGraph(), params);
break;
} else if (parentModel instanceof SemGraphWrapper) {
SemGraphWrapper wrapper = (SemGraphWrapper) parentModel;
new IndTestChooser().adjustIndTestParams(wrapper.getGraph(), params);
break;
}
}
DataModel dataModel1 = null;
Graph graph = null;
for (Object parentModel1 : parentModels) {
if (parentModel1 instanceof DataWrapper) {
DataWrapper dataWrapper = (DataWrapper) parentModel1;
dataModel1 = dataWrapper.getSelectedDataModel();
}
if (parentModel1 instanceof GraphWrapper) {
GraphWrapper graphWrapper = (GraphWrapper) parentModel1;
graph = graphWrapper.getGraph();
}
if (parentModel1 instanceof DagWrapper) {
DagWrapper dagWrapper = (DagWrapper) parentModel1;
graph = dagWrapper.getDag();
}
if (parentModel1 instanceof SemGraphWrapper) {
SemGraphWrapper semGraphWrapper = (SemGraphWrapper) parentModel1;
graph = semGraphWrapper.getGraph();
}
}
if (dataModel1 != null) {
varNames = new ArrayList(dataModel1.getVariableNames());
} else if (graph != null) {
Iterator it = graph.getNodes().iterator();
varNames = new ArrayList();
Node temp;
while (it.hasNext()) {
temp = (Node) it.next();
if (temp.getNodeType() == NodeType.MEASURED) {
varNames.add(temp.getName());
}
}
} else {
throw new NullPointerException(
"Null model (no graph or data model " + "passed to the search).");
}
params.setVarNames(varNames);
JButton knowledgeButton = new JButton("Edit");
IntTextField depthField = new IntTextField(params.getIndTestParams().getDepth(), 4);
depthField.setFilter(
new IntTextField.Filter() {
public int filter(int value, int oldValue) {
try {
params.getIndTestParams().setDepth(value);
Preferences.userRoot().putInt("depth", value);
return value;
} catch (Exception e) {
return oldValue;
}
}
});
double alpha = params.getIndTestParams().getAlpha();
if (!Double.isNaN(alpha)) {
alphaField = new DoubleTextField(alpha, 4, NumberFormatUtil.getInstance().getNumberFormat());
alphaField.setFilter(
new DoubleTextField.Filter() {
public double filter(double value, double oldValue) {
try {
params.getIndTestParams().setAlpha(value);
Preferences.userRoot().putDouble("alpha", value);
return value;
} catch (Exception e) {
return oldValue;
}
}
});
}
setBorder(new MatteBorder(10, 10, 10, 10, super.getBackground()));
setLayout(new BoxLayout(this, BoxLayout.Y_AXIS));
Box b2 = Box.createHorizontalBox();
b2.add(new JLabel("Knowledge:"));
b2.add(Box.createGlue());
b2.add(knowledgeButton);
add(b2);
add(Box.createVerticalStrut(10));
if (!Double.isNaN(alpha)) {
Box b0 = Box.createHorizontalBox();
b0.add(new JLabel("Alpha Value:"));
b0.add(Box.createGlue());
b0.add(alphaField);
add(b0);
add(Box.createVerticalStrut(10));
}
Box b1 = Box.createHorizontalBox();
b1.add(new JLabel("Search Depth:"));
b1.add(Box.createGlue());
b1.add(depthField);
add(b1);
add(Box.createVerticalStrut(10));
knowledgeButton.addActionListener(
new ActionListener() {
public final void actionPerformed(ActionEvent e) {
openKnowledgeEditor();
}
});
}