// Set up the substance selector box
private void setUpList() {
List s = system.getSubstances();
for (Object o : s) {
Substance sub = (Substance) o;
substanceBoxModel.addElement(sub.getName());
}
}
public void setUpList() {
List substances = system.getSubstances();
int nSubs = substances.size(); // substances.length;
Substance s;
for (int i = 0; i < nSubs; i++) {
s = (Substance) (substances.get(i));
substanceNames.addElement(s.getName());
}
}
public DoseObjectiveEditor(
JFrame jf, ParameterSearchDoseResponseEditor e, TargetDoseObjective tdo) {
this(jf, e);
metric = tdo.getMetric();
substance = metric.getSubstance();
substanceSelector.setSelectedItem(substance.getName());
objective = tdo.getObjective();
weightField.setText((new Double(tdo.getWeight())).toString());
updateTarget();
}
public String toString() {
return "Correlation coefficient of " + substance.getName() + " and " + target.getName();
}
public double getValue() {
double[] subVals = substance.getValues();
double[] tarVals = target.getValues();
return Statistics.rSquared(subVals, tarVals);
}
public void addSubstance(Substance s, Double d) {
super.addSubstance(s, d);
if (s.getName().compareTo("AminoAcid") == 0) aminoAcid = s;
}