@Override
public Object doInHibernate(Session session) throws HibernateException, XWikiException {
XWikiContext context = getXWikiContext();
XWiki xwiki = context.getWiki();
DocumentReference oldClassReference =
new DocumentReference(context.getWikiId(), "ClinicalInformationCode", this.className);
DocumentReference newClassReference =
new DocumentReference(context.getWikiId(), Constants.CODE_SPACE, this.className);
Query q =
session.createQuery(
"select distinct o.name from BaseObject o where o.className = '"
+ R45391PhenoTips434DataMigration.this.serializer.serialize(oldClassReference)
+ "'");
@SuppressWarnings("unchecked")
List<String> documents = q.list();
for (String docName : documents) {
XWikiDocument doc =
xwiki.getDocument(
R45391PhenoTips434DataMigration.this.resolver.resolve(docName), context);
for (BaseObject oldObject : doc.getXObjects(oldClassReference)) {
BaseObject newObject = oldObject.duplicate();
newObject.setXClassReference(newClassReference);
doc.addXObject(newObject);
}
doc.removeXObjects(oldClassReference);
doc.setComment("Migrated patient data in class " + this.className);
doc.setMinorEdit(true);
try {
// There's a bug in XWiki which prevents saving an object in the same session that it was
// loaded,
// so we must clear the session cache first.
session.clear();
((XWikiHibernateStore) getStore()).saveXWikiDoc(doc, context, false);
session.flush();
} catch (DataMigrationException e) {
// We're in the middle of a migration, we're not expecting another migration
}
}
return null;
}
@Before
public void before() throws Exception {
Locale.setDefault(Locale.ROOT);
// checking
this.preferencesDocumentReference =
new DocumentReference(
this.oldcore.getXWikiContext().getWikiId(), "XWiki", "XWikiPreferences");
XWikiDocument preferencesDocument = new XWikiDocument(this.preferencesDocumentReference);
BaseObject preferencesObject = new BaseObject();
preferencesObject.setXClassReference(
new DocumentReference(
this.oldcore.getXWikiContext().getWikiId(), "XWiki", "XWikiPreferences"));
preferencesDocument.addXObject(preferencesObject);
preferencesDocument.setSyntax(Syntax.PLAIN_1_0);
this.oldcore
.getMockXWiki()
.saveDocument(preferencesDocument, "", this.oldcore.getXWikiContext());
this.defaultWikiTranslationReference =
new DocumentReference(this.oldcore.getXWikiContext().getWikiId(), "XWiki", "Translations");
XWikiDocument defaultWikiTranslation = new XWikiDocument(this.defaultWikiTranslationReference);
defaultWikiTranslation.setSyntax(Syntax.PLAIN_1_0);
this.oldcore
.getMockXWiki()
.saveDocument(defaultWikiTranslation, "", this.oldcore.getXWikiContext());
// MessageTool
this.tool =
new XWikiMessageTool(
this.oldcore
.getMocker()
.<ContextualLocalizationManager>getInstance(ContextualLocalizationManager.class));
}
