// reset the agent layer's MBR
public void resetLayers() {
MBR = roadLayer.getMBR();
// MBR.init(740000, 780000, 2000000, 2040000); // 35 22
MBR.init(740000, 779000, 2009000, 2034000); // 35 22
// MBR.init(745000, 775000, 2015000, 2030000);
this.humanLayer.setMBR(MBR);
// this.baseLayer.setMBR(MBR);
}
@Override
public void init(final Envelope env) {
super.init(env);
if (env instanceof Envelope3D) {
this.minz = ((Envelope3D) env).getMinZ();
this.maxz = ((Envelope3D) env).getMaxZ();
}
}
/** Read in data and set up the simulation */
public void start() {
super.start();
try {
GeomVectorField populationLayer = new GeomVectorField(grid_width, grid_height);
//////////////////////////////////////////////
///////////// READING IN DATA ////////////////
//////////////////////////////////////////////
readInVectorLayer(baseLayer, dirName + "haiti/haiti_meters.shp", "area", new Bag());
readInVectorLayer(
populationLayer,
dirName + "population/popCentroids_meters.shp",
"residential areas",
new Bag());
readInVectorLayer(roadLayer, dirName + "roads/roads_meters.shp", "road network", new Bag());
readInVectorLayer(
waterwayLayer, dirName + "waterways/rivers_meters.shp", "waterways", new Bag());
readInVectorLayer(
medicalLayer,
dirName + "healthFacilities/health_meters.shp",
"health facilities",
new Bag());
//////////////////////////////////////////////
////////////////// CLEANUP ///////////////////
//////////////////////////////////////////////
// standardize the MBRs so that the visualization lines up
MBR = roadLayer.getMBR();
// MBR.init(740000, 780000, 2000000, 2040000); // 35 22
MBR.init(740000, 779000, 2009000, 2034000); // 35 22
// MBR.init(750000, 772000, 2009500, 2028500); // 22 18
// MBR.init(756000, 766000, 2015500, 2022500);
roadLayer.setMBR(MBR);
// baseLayer.setMBR(MBR);
this.grid_width = roadLayer.fieldWidth;
this.grid_height = roadLayer.fieldHeight;
// base layer
landArea = (Geometry) ((MasonGeometry) baseLayer.getGeometries().get(0)).geometry.clone();
for (Object o : baseLayer.getGeometries()) {
MasonGeometry g = (MasonGeometry) o;
landArea = landArea.union(g.geometry);
}
// clean up the road network
System.out.print("Cleaning the road network...");
roads =
NetworkUtilities.multipartNetworkCleanup(roadLayer, roadNodes, resolution, fa, random, 0);
roadNodes = roads.getAllNodes();
testNetworkForIssues(roads);
/* // set up roads as being "open" and assemble the list of potential terminii
roadLayer = new GeomVectorField(grid_width, grid_height);
for(Object o: roadNodes){
GeoNode n = (GeoNode) o;
networkLayer.addGeometry(n);
boolean potential_terminus = false;
// check all roads out of the nodes
for(Object ed: roads.getEdgesOut(n)){
// set it as being (initially, at least) "open"
ListEdge edge = (ListEdge) ed;
((MasonGeometry)edge.info).addStringAttribute("open", "OPEN");
networkEdgeLayer.addGeometry( (MasonGeometry) edge.info);
roadLayer.addGeometry((MasonGeometry) edge.info);
((MasonGeometry)edge.info).addAttribute("ListEdge", edge);
String type = ((MasonGeometry)edge.info).getStringAttribute("highway");
if(type.equals("motorway") || type.equals("primary") || type.equals("trunk"))
potential_terminus = true;
}
// check to see if it's a terminus
if(potential_terminus && !MBR.contains(n.geometry.getCoordinate()) && roads.getEdges(n, null).size() == 1){
terminus_points.add(n);
}
}
*/
// reset MBRS in case it got messed up during all the manipulation
roadLayer.setMBR(MBR);
networkLayer.setMBR(MBR);
networkEdgeLayer.setMBR(MBR);
waterwayLayer.setMBR(MBR);
baseLayer.setMBR(MBR);
medicalLayer.setMBR(MBR);
humanLayer.setMBR(MBR);
homesLayer.setMBR(MBR);
diseasesLayer.setMBR(MBR);
System.out.println("done");
/////////////////////
///////// Clean up roads for Agents to use ///////////
/////////////////////
/* Network majorRoads = extractMajorRoads();
testNetworkForIssues(majorRoads);
// assemble list of secondary versus local roads
ArrayList <Edge> myEdges = new ArrayList <Edge> ();
GeomVectorField secondaryRoadsLayer = new GeomVectorField(grid_width, grid_height);
GeomVectorField localRoadsLayer = new GeomVectorField(grid_width, grid_height);
for(Object o: majorRoads.allNodes){
majorRoadNodesLayer.addGeometry((GeoNode)o);
for(Object e: roads.getEdges(o, null)){
Edge ed = (Edge) e;
myEdges.add(ed);
String type = ((MasonGeometry)ed.getInfo()).getStringAttribute("highway");
if(type.equals("secondary"))
secondaryRoadsLayer.addGeometry((MasonGeometry) ed.getInfo());
else if(type.equals("local"))
localRoadsLayer.addGeometry((MasonGeometry) ed.getInfo());
}
}
*/ System.gc();
//////////////////////////////////////////////
////////////////// AGENTS ///////////////////
//////////////////////////////////////////////
// set up the agents in the simulation
setupAgents(populationLayer);
humanLayer.setMBR(MBR);
homesLayer.setMBR(MBR);
/* // for each of the Agents, set up relevant, environment-specific information
int aindex = 0;
for(Human a: humans){
if(a.familiarRoadNetwork == null){
// the Human knows about major roads
Network familiar = majorRoads.cloneGraph();
// connect the major network to the Human's location
connectToMajorNetwork(a.getNode(), familiar);
a.familiarRoadNetwork = familiar;
// add local roads into the network
for(Object o: humanLayer.getObjectsWithinDistance(a, 50)){
Human b = (Human) o;
if(b == a || b.familiarRoadNetwork != null || b.getNode() != a.getNode()) continue;
b.familiarRoadNetwork = familiar.cloneGraph();
}
}
// connect the Human's work into its personal network
if(a.getWork() != null)
connectToMajorNetwork(getClosestGeoNode(a.getWork()), a.familiarRoadNetwork);
// set up its basic paths (fast and quicker and recomputing each time)
a.setupPaths();
if(aindex % 100 == 0){ // print report of progress
System.out.println("..." + aindex + " of " + humans.size());
}
aindex++;
}
*/
// Disease d = new Disease();
Cholera d = new Cholera();
HumanTeleporter h = humans.get(random.nextInt(humans.size()));
h.acquireDisease(d);
// seed the simulation randomly
// seedRandom(System.currentTimeMillis());
// schedule the reporter to run
// setupReporter();
} catch (Exception e) {
e.printStackTrace();
}
}
/**
* Initialize an <code>Envelope</code> from an existing 3D Envelope.
*
* @param env the 3D Envelope to initialize from
*/
public void init(final Envelope3D env) {
super.init(env);
this.minz = env.minz;
this.maxz = env.maxz;
}
/**
* Initialize the bounding box with another bounding box.
*
* @since 2.4
*/
public void setBounds(final BoundingBox bbox) {
ensureCompatibleReferenceSystem(bbox);
super.init(getJTSEnvelope(bbox));
}
/** Sets this envelope to the specified bounding box. */
public void init(BoundingBox bounds) {
super.init(
bounds.getMinimum(0), bounds.getMaximum(0), bounds.getMinimum(1), bounds.getMaximum(1));
this.crs = bounds.getCoordinateReferenceSystem();
}