private void parse(Concept c) throws IOException, ParseException {
write(c);
if (c.getDescription() != null) {
for (Description d : c.getDescription()) {
write(d);
}
}
}
@Override
public boolean equals(Object o) {
if (o instanceof Concept) {
Concept c = (Concept) o;
if (c.getSerialisedId() == this.getSerialisedId()) {
return true;
}
}
return false;
}
public XmlRefsetConcept(Concept c) {
setId(c.getSerialisedId());
setTitle(c.getFullySpecifiedName());
setEffectiveTime(c.getEffectiveTime());
setActive(c.isActive());
try {
setHref(UrlBuilder.createConceptUrl(c));
} catch (MalformedURLException e) {
LOG.error("Unable to build concept href url, setting null: " + e.getMessage(), e);
setHref(null);
}
}
@Override
public void write(final Concept c) throws IOException, ParseException {
final String id = NS_SNOMED_CONCEPT_IDENTIFIER + ':' + c.getSerialisedId();
// Master
writeDatatypeProperties(c, id);
// Description
if ((c.getDescription() != null) && !c.getDescription().isEmpty()) {
for (Description d : c.getDescription()) {
writer.write(
id
+ ' '
+ PROPERTY_SNOMED_DESCRIPTION
+ ' '
+ NS_SNOMED_DESCRIPTION_IDENTIFIER
+ ':'
+ d.getSerialisedId()
+ LINE_ENDING);
}
}
// History
if ((c.getHistory() != null) && !c.getHistory().isEmpty()) {
int counter = 1;
for (Concept hc : c.getHistory()) {
String hid = id + "_h" + counter++;
writeDatatypeProperties(hc, hid);
// History Entry
writer.write(id + ' ' + PROPERTY_SNOMED_HISTORY_ENTRY + ' ' + hid + LINE_ENDING);
}
}
}
public void writeDatatypeProperties(final Concept c, String id)
throws IOException, ParseException {
// Label
writer.write(
id
+ ' '
+ PROPERTY_RDFS_LABEL
+ " \""
+ safe(c.getFullySpecifiedName())
+ '\"'
+ LANGUAGE
+ LINE_ENDING);
// Active
writer.write(
id
+ ' '
+ PROPERTY_SNOMED_ACTIVE
+ " \""
+ (c.isActive() == true ? "true" : "false")
+ '\"'
+ XML_SCHEMA_DATATYPE_BOOLEAN
+ LINE_ENDING);
// Module
if (c.getModule() != null) {
writer.write(
id
+ ' '
+ PROPERTY_SNOMED_MODULE
+ ' '
+ NS_SNOMED_CONCEPT_IDENTIFIER
+ ':'
+ c.getModule().getSerialisedId()
+ LINE_ENDING);
}
// Status
if (c.getStatus() != null) {
writer.write(
id
+ ' '
+ PROPERTY_SNOMED_STATUS
+ ' '
+ NS_SNOMED_CONCEPT_IDENTIFIER
+ ':'
+ c.getStatus().getSerialisedId()
+ LINE_ENDING);
}
// Effective Time
writer.write(
id
+ ' '
+ PROPERTY_SNOMED_EFFECTIVE_TIME
+ " \""
+ dateTimeFormatter.format(longTimeParser.parse(String.valueOf(c.getEffectiveTime())))
+ '\"'
+ XML_SCHEMA_DATATYPE_DATE
+ LINE_ENDING);
}