public void clearData(boolean clearDatabaseFolder) {
projectDetails = null;
spectrumAnnotator = new SpectrumAnnotator();
try {
spectrumFactory.closeFiles();
} catch (Exception e) {
e.printStackTrace();
}
try {
sequenceFactory.closeFile();
} catch (Exception e) {
e.printStackTrace();
}
try {
GOFactory.getInstance().closeFiles();
} catch (Exception e) {
e.printStackTrace();
}
try {
spectrumFactory.clearFactory();
} catch (Exception e) {
e.printStackTrace();
}
try {
sequenceFactory.clearFactory();
} catch (Exception e) {
e.printStackTrace();
}
try {
GOFactory.getInstance().clearFactory();
} catch (Exception e) {
e.printStackTrace();
}
identifiedModifications = null;
if (clearDatabaseFolder) {
clearDatabaseFolder();
}
resetFeatureGenerator();
// set up the tabs/panels
currentPSFile = null;
}
