public Sample copy(boolean copyAdditionalIDs) {
Sample newSample = new Sample();
newSample.modelNodeToDataNode = new HashMap<Integer, Integer>();
newSample.dataNodeToModelNode = new HashMap<Integer, Integer>();
newSample.dataIDToDataNodeID = new HashMap<String, Integer>();
newSample.relationshipIDs = new HashMap<String, RelationshipForSample>();
newSample.mismatch = this.mismatch;
newSample.mnmrReference = this.mnmrReference;
newSample.mnmrSet = this.mnmrSet;
newSample.additionalRelationshipIDs = new HashMap<String, ArrayList<String>>();
newSample.ID = this.ID;
if (copyAdditionalIDs) {
newSample.hasAdditionalIDs = this.hasAdditionalIDs;
newSample.additionalIDCount = this.additionalIDCount;
copyHashMap(this.additionalRelationshipIDs, newSample.additionalRelationshipIDs);
}
copyHashMap(this.dataIDToDataNodeID, newSample.dataIDToDataNodeID);
copyHashMap(this.dataNodeToModelNode, newSample.dataNodeToModelNode);
copyHashMap(this.relationshipIDs, newSample.relationshipIDs);
copyHashMap(this.modelNodeToDataNode, newSample.modelNodeToDataNode);
return newSample;
}
