private DeviceMetric initializeDeviceMetric(Device d) {
log("Initializing device metric");
DeviceMetric metric = new DeviceMetric();
CodeableConceptDt metricType = new CodeableConceptDt();
// TODO is this the right code and display?
metricType
.addCoding()
.setCode("160020")
.setSystem("https://rtmms.nist.gov")
.setDisplay("MDC_CONC_GLU_GEN");
metric.setType(metricType);
metric.setSource(newResourceReference(d.getId()));
metric.setText(getNarrative(metric));
metric.setCategory(DeviceMetricCategoryEnum.MEASUREMENT);
CodeableConceptDt unitConcept = new CodeableConceptDt();
unitConcept
.addCoding()
.setDisplay("MDC_DIM_MILLI_MOLE_PER_L")
.setSystem("https://rtmms.nist.gov")
.setCode("266866");
metric.setUnit(unitConcept);
// TODO what is the identifier here??? especially the value
metric.setIdentifier(
new IdentifierDt().setSystem(SYSTEM_URL + "/metric/").setValue("glucosemillimolperliter"));
log("Initializing device metric done.");
return metric;
}
public void addFHIRCoding(
CodeableConceptDt codeableConcept, String code, String system, String display) {
CodingDt coding = codeableConcept.addCoding();
coding.setCode(code);
coding.setSystem(system);
coding.setDisplay(display);
}
private Device initializeDevice(Patient p) {
log("Initializing device");
Device d = newDevice();
d.setManufacturer(deviceInfo.getManufacturerName());
d.setModel(deviceInfo.getModelNumber());
d.setVersion(deviceInfo.getFirmwareRevision());
NarrativeDt n = getNarrative(d);
n.setDiv(
n.getDiv()
.getValueAsString()
.substring(5, n.getDiv().getValueAsString().length() - 6)
.concat("<strong>Serial Number: </strong>")
.concat(deviceInfo.getSerialNumber())
.concat("<br /><strong>Name: </strong>")
.concat(deviceInfo.getName())
.concat("<br /><strong>MAC Address: </strong>")
.concat(deviceInfo.getAddress()));
d.setText(n);
CodeableConceptDt type = new CodeableConceptDt();
// TODO find valid url
type.addCoding()
.setCode("15-102")
.setDisplay("Glukose-Analysegerät")
.setSystem("http://umdns.org");
d.setType(type);
d.setPatient(newResourceReference(p.getId()));
d.setIdentifier(Arrays.asList(getIdentifier("/devices/", "" + deviceInfo.getSysID())));
log("Initializing device done");
return d;
}
public CodeableConceptDt addTRCodingOrDisplay(Concept concept) {
CodeableConceptDt codeableConceptDt = addTRCoding(concept);
if (CollectionUtils.isEmpty(codeableConceptDt.getCoding())) {
CodingDt coding = codeableConceptDt.addCoding();
coding.setDisplay(concept.getName().getName());
}
return codeableConceptDt;
}
public CodeableConceptDt getTRValueSetCodeableConcept(
Concept concept, String valueSetURL, CodeableConceptDt codeableConcept) {
CodingDt coding = codeableConcept.addCoding();
if (null != idMappingsRepository.findByInternalId(concept.getUuid())) {
coding.setCode(getTRValueSetCode(concept));
coding.setSystem(valueSetURL);
}
coding.setDisplay(concept.getName().getName());
return codeableConcept;
}
private CodeableConceptDt createCode(int unit) {
log("get code done");
CodeableConceptDt codeableConceptDt = new CodeableConceptDt();
CodingDt coding = new CodingDt();
String code = "", display = "";
switch (unit) {
case GlucoseRecord.UNIT_kgpl:
code = "2339-0";
display = "Glucose [Mass/volume] in Blood";
break;
case GlucoseRecord.UNIT_molpl:
code = "15074-8";
display = "Glucose [Moles/volume] in Blood";
break;
}
codeableConceptDt.addCoding().setSystem("http://loinc.org").setCode(code).setDisplay(display);
log("get code done");
return codeableConceptDt;
}